mRNA_Ecto-sp13_S_contig14380.3376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 564 bits (1454), Expect = 3.020e-194 Identity = 303/326 (92.94%), Postives = 307/326 (94.17%), Query Frame = 1
Query: 1 LVTGDTSPTPTTTT---SGSFTCDGVLKGDYCCSAGCGECGGSGCSDRGGGLTGADCCTSDISNLCSDTGAAPCVVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
+V GDTSPT SGSFTCDGVLKGDYCCSAGCGECGG GLTGADCCTSDISNLCS TGAAPC+VDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSF ETTVTSWDTDKGEERT+YEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLC+DLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY
Sbjct: 292 IVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCGECGGXXXXXXXXGLTGADCCTSDISNLCSVTGAAPCIVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 617
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 322 bits (824), Expect = 1.270e-101 Identity = 182/309 (58.90%), Postives = 217/309 (70.23%), Query Frame = 1
Query: 94 AGCGECGGSGCSDRGGGLTGADCCTSDISN---LCSDTGAAPCVVDGDSTGP-------TPTPXXXXXXXXXXXXXXXXX------GTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERT-KYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
AGCG CGG+GCS R G LT +DCC I LCS TG APC VDGDS+ P +PTP XXXXXX T A++ D++ F GGCATLTD+YN Q G+GPL+VLDS++N V G GGSA PTG WLLTS+++I D TL+V G GGD DVLRI+ST +WEI G GG++ F+ T VTSWDT KG+ER K GRSFI C+TQ+DD+ +SCSG SNK+ G CRMDIIDSTMGNMG+ +ESYGLTWKVRGLC +LSN+++ D NVYGDIK S+IYGMYYGMYSY
Sbjct: 146 AGCGTCGGTGCSQRPG-LTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPEQTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGCDTKATVQIDKDTAYFKSGGCATLTDLYNAQDGTGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSKYWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNEGRSFIRCITQYDDN--YSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLKLFDKRNVYGDIKNSDIYGMYYGMYSY 451
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 298 bits (764), Expect = 3.450e-93 Identity = 149/225 (66.22%), Postives = 170/225 (75.56%), Query Frame = 1
Query: 313 ASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLC-----TDLS-NVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
A++ + D + F GGGC TLT MY Q G GPLYVLD +N++V G +PTGYWLL +L ++DG TL VHGT+A GDADVLR+ ST DDF E+RG+GG+L F+ TTVTSWDTD G+ER GRSFINCVTQFDDS IW C GRSN+E GECRMDII STMGNMGWFDAESYGLTWKVRG C T + N EI +DHNVYGDI SEIYGMYYG YSY
Sbjct: 182 ATVRFTDDIAYFEGGGCGTLTQMYEAQEGDGPLYVLDENNDVVGG-----TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSY 401
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 231 bits (589), Expect = 2.470e-68 Identity = 140/314 (44.59%), Postives = 177/314 (56.37%), Query Frame = 1
Query: 64 GVLKGDYCCSAGCGECGGSGCSDRGGGLTGADCCTSDISN---LCSDTGAAPCVVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQ-----SGSGPLYVLDSSNNIVSGGGGSASP---TGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDD-DFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
GV + CC CG CGGS C RG GL ADCC + IS LCS+ +APC++D D TG TP G GC T+TD+YN + S GP++ LD S N V +P + WLLT+ L I G Y G+S GGD D LRIQST DF E+R GGS+ F+ T VTSWDT + Y GGRSF+NCV++ ++ C G++ E GECRMDII+S +G +G+FD+ESYGLTWKVRG C DLSN ++ D NVYG++ GS+I+ YYG YSY
Sbjct: 18 GVQSENICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIMD-DVTGNTPDAE--------------------------------GEGCFTITDLYNFRLESDGSAKGPIFNLDDSYNTV------LNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEV--CVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSY 290
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 219 bits (559), Expect = 1.260e-61 Identity = 116/210 (55.24%), Postives = 143/210 (68.10%), Query Frame = 1
Query: 352 GGGCATLTDMYNTQSG---SGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDD-DFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
GGGCATLTD+Y Q G GPL+VLDS++N+V G SPTGYWLL + + +G L VHG AGGDA VLRIQST D++EIRG GGSLSF +T VTSWDTD+ + T Y+ RSFI CV++ +C G + GECRMDII S MG MG+ AESYG++WKVRG C++ N E+ + V GDI S+IYGMYYG YS+
Sbjct: 404 GGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVVGG-----SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSF 608
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 202 bits (513), Expect = 1.010e-58 Identity = 102/186 (54.84%), Postives = 127/186 (68.28%), Query Frame = 1
Query: 415 VLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
+LD S N ++ S T WLL S L + DG Y G+ GGD D LRIQST DD++E+RG GGS+ F T VTSWDT + + YEGGRSF+NCV++ + +C G++ + GECRMDII+S MG MG+FDAESYGLTWKVRG C DLSN ++ + NVYGDIK S I+ MYYGMYSY
Sbjct: 1 MLDDSGNKITS---PTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSY 181
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.030e-58 Identity = 110/220 (50.00%), Postives = 141/220 (64.09%), Query Frame = 1
Query: 358 GCATLTDMYNTQ------SGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVR---------GLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
GC TLTD+YN + S GPLY+LD S + ++ S T WLL + L + +G Y G+ GGD D LRIQST DD++E+RG GGS+ F T VTSWDT + + YEGGRSF+NCV++ + +C G + + GECRMDII+S MG MG+FD+ESYGLTWKVR G C DLSN ++ + NVYGDIK S+I+ MYYG YSY
Sbjct: 21 GCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITA---PTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGE--TCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSY 235
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 201 bits (512), Expect = 3.300e-57 Identity = 105/205 (51.22%), Postives = 132/205 (64.39%), Query Frame = 1
Query: 355 GGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
GGC TL D++ G PLY + S+ VS +S TG WLLT SL + DG+TL VHG SAGG AD LR+ ST DF +R GGSL F T V +WDT K + RT GRS+I+ V++ C GR+ K GE RMDI DS M +G+F +ESYGLTWKVRGLC DLSN+E+ D NVYG+I S+I+ Y+G+Y+Y
Sbjct: 64 GGCVTLEDIWRDLDGGAPLYAVKPSSGDVS-----SSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTY 263
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 206 bits (525), Expect = 1.060e-56 Identity = 112/216 (51.85%), Postives = 140/216 (64.81%), Query Frame = 1
Query: 352 GGGCATLTDMYNTQ------SGSGPLYVLDSSN---NIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
G GC T+TD+YN + S GP+Y+LD +I SG T WLL + L I G Y GTSAGGD + LRIQST DDF E+RG GGSL F++T VTSWDT E + YE GRSF+NCV++ D C G + E GECRMDII+S + +G+FD+ESYG+TWKVRG C DLSN E+ + NVYGD+ GS+I+ +YYG YSY
Sbjct: 446 GEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSG------ITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGD--DCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSY 653
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 198 bits (503), Expect = 2.200e-56 Identity = 105/213 (49.30%), Postives = 144/213 (67.61%), Query Frame = 1
Query: 352 GGGCATLTDMY------NTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
GGGC TL+D+Y N + GP++VLDS++ + + + TG WLLT+ L + G TLY G GG+ LRI+ST DF+EIRG GG+L F++T VTSWD D + + Y+ GRSFI CV++ + +C+ + GECRMDIIDS MG +G+ +E+YG+TWKVRG C+DLSN ++ DD NVYGD+KGS+I+ MYYGMYS+
Sbjct: 8 GGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDET---ATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGED-TCAINN---MGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSF 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14380.3376.1 >prot_Ecto-sp13_S_contig14380.3376.1 ID=prot_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp LVTGDTSPTPTTTTSGSFTCDGVLKGDYCCSAGCGECGGSGCSDRGGGLTback to top mRNA from alignment at Ecto-sp13_S_contig14380:3..4133- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14380.3376.1 ID=mRNA_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14380:3..4133- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14380:3..4133- >mRNA_Ecto-sp13_S_contig14380.3376.1 ID=mRNA_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14380:3..4133- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |