mRNA_Ecto-sp13_S_contig1434.3356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1434.3356.1
Unique NamemRNA_Ecto-sp13_S_contig1434.3356.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 7.840e-62
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 315
            SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQ+IVDHLINQLLDKLP TVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR
Sbjct:  728 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQRIVDHLINQLLDKLPHTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 832
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BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 5.140e-61
Identity = 102/105 (97.14%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:    1 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 315
            SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHL+NQLLDKLP TVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPR LNRQATVGKR
Sbjct:  728 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLMNQLLDKLPHTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRHLNRQATVGKR 832
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BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.870e-22
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 315
            SNP  MGAG+S+ LR +EVD PMH+  LR LQ I+D    +LLDKLP+TVRGMGM L+    P     G  Q +   L NLAG++ V+W LEPR+L     V  R
Sbjct:  738 SNPFAMGAGLSRTLRTSEVDHPMHQLGLRRLQSIIDDFTMELLDKLPRTVRGMGMELIGGHQPITFGEGFHQGKHHRLGNLAGFIAVQWFLEPRVLLGDVAVENR 842
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BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-20
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 SNPLVMGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 315
            SNP  M AGVS+ LR ++VD PMH   L  LQ I+D   +++L++LPQTVRGMG+ LL    P     GL+Q +   L NLAG++VV+WILEP LL  +    K+
Sbjct:  796 SNPFAMAAGVSRTLRMSKVDFPMHSEGLGRLQSIMDDFTSKVLEQLPQTVRGMGVALLGGHQPIVFGEGLEQGKRHRLTNLAGFIVVQWILEPNLLVGKINTQKK 900
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX79_ECTSI7.840e-6298.10Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JB40_9PHAE5.140e-6197.14Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI1.870e-2250.48Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LHA0_ECTSI1.070e-2048.57Transient Receptor Potential Channel. Partial sequ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1434contigEcto-sp13_S_contig1434:9983..10878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score204.5
Seed ortholog evalue2.3e-50
Seed eggNOG ortholog2880.D7FX79
Model size318
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E7I3@1,2SE3W@2759
Ec32 ortholog descriptionAnkyrin Repeat Transient Receptor Potential Channel
Ec32 orthologEc-10_004600.1
Cds size303
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.4478707-UTR-Ecto-sp13_S_contig1434:9982..99971681462766.4478707-UTR-Ecto-sp13_S_contig1434:9982..9997Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1434 9983..9997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.4667177-CDS-Ecto-sp13_S_contig1434:9997..101051681462766.4667177-CDS-Ecto-sp13_S_contig1434:9997..10105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1434 9998..10105 +
1681462766.4770732-CDS-Ecto-sp13_S_contig1434:10326..104641681462766.4770732-CDS-Ecto-sp13_S_contig1434:10326..10464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1434 10327..10464 +
1681462766.487008-CDS-Ecto-sp13_S_contig1434:10821..108781681462766.487008-CDS-Ecto-sp13_S_contig1434:10821..10878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1434 10822..10878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1434.3356.1prot_Ecto-sp13_S_contig1434.3356.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1434 9998..10878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1434.3356.1

>prot_Ecto-sp13_S_contig1434.3356.1 ID=prot_Ecto-sp13_S_contig1434.3356.1|Name=mRNA_Ecto-sp13_S_contig1434.3356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGM
TLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR
*
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mRNA from alignment at Ecto-sp13_S_contig1434:9983..10878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1434.3356.1 ID=mRNA_Ecto-sp13_S_contig1434.3356.1|Name=mRNA_Ecto-sp13_S_contig1434.3356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1434:9983..10878+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACCCGTTGGTCATGGGTGCGGGCGTATCCAAGAACCTGAGAAGAGC
CGAAGTCGACTGCCCGATGCATCGCGCCAAACTCCGCTGCCTTCAGCAGA
TCGTCGATCATCTCATAAACCAGGTACGGGAGACTCCATTCCCGCAATAA
TGGCGGCATCCTTTTCTCGTTCGCGTGACAACCAAAGAGATTTGTGCATG
TAACGCCTCGCAAATTTTCCTTTGAAGTATTGTGAAGTTTCTTTTGGGTG
CTTGAGCTCCTAGTCCATGTTTTTCAGCTGTTGTTCTGGGTGCAAGCCAC
GGATCGAGCCCAGCTTGCCTTGCATCCTCGTATGCTCTGCCCAGCTGCTG
GACAAGCTACCTCAAACTGTCAGAGGGATGGGCATGACGTTACTTCGTCC
CATGGTACCCCACCACCGTCTGCCTGGGCTTCAACAGCATAGGCTAGATA
CCTTGGCGAACCTCGCCGGCTACATGGTCGTGGTGAGTCATCCCTGAATA
GAGCAAAACGAGCTGTCTTTGTCCGAAGGCATACCGACATCGCTCGTGTG
CCAGGTTGCGGTTGTGGCAGGTTCTGAGTTGATTTCATTCATACGTTGTT
TTCGGCGGCAAAGCATATTCACACGGAAGAGCGCGTGTTTTCAGTCCATA
CCCTCGACGACTTCAACATACTCCGACCAAAGGCACAGACGTTATCGACT
GGACGGCAACCGATATCGATAATAATTATAACGGGACGCCCACACCAATG
TGAGCAGAAGTCACATCCGAGCGGTTATATAAGAAACGAAGCAACTTATT
TGCCTTCTGCGCAATTGTTTTGTTCGTTTGTGGGTACAGGAGTGGATCTT
GGAACCGCGGCTTCTGAACCGGCAAGCGACCGTTGGCAAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1434:9983..10878+

>mRNA_Ecto-sp13_S_contig1434.3356.1 ID=mRNA_Ecto-sp13_S_contig1434.3356.1|Name=mRNA_Ecto-sp13_S_contig1434.3356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1434:9983..10878+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCGGGCGTATCCAAGAACCTGAGAAGAGCCGAAGTCGACTGCCC
GATGCATCGCGCCAAACTCCGCTGCCTTCAGCAGATCGTCGATCATCTCA
TAAACCAGCTGCTGGACAAGCTACCTCAAACTGTCAGAGGGATGGGCATG
ACGTTACTTCGTCCCATGGTACCCCACCACCGTCTGCCTGGGCTTCAACA
GCATAGGCTAGATACCTTGGCGAACCTCGCCGGCTACATGGTCGTGGAGT
GGATCTTGGAACCGCGGCTTCTGAACCGGCAAGCGACCGTTGGCAAGAGG
TGA
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