prot_Ecto-sp13_S_contig1434.3356.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1434.3356.1
Unique Nameprot_Ecto-sp13_S_contig1434.3356.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length101
Homology
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.100e-58
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query:    1 MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 100
            MGAGVSKNLRRAEVDCPMHRAKLRCLQ+IVDHLINQLLDKLP TVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR
Sbjct:  733 MGAGVSKNLRRAEVDCPMHRAKLRCLQRIVDHLINQLLDKLPHTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 832          
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 7.130e-58
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0
Query:    1 MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 100
            MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHL+NQLLDKLP TVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPR LNRQATVGKR
Sbjct:  733 MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLMNQLLDKLPHTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRHLNRQATVGKR 832          
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.230e-20
Identity = 50/100 (50.00%), Postives = 63/100 (63.00%), Query Frame = 0
Query:    1 MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 100
            MGAG+S+ LR +EVD PMH+  LR LQ I+D    +LLDKLP+TVRGMGM L+    P     G  Q +   L NLAG++ V+W LEPR+L     V  R
Sbjct:  743 MGAGLSRTLRTSEVDHPMHQLGLRRLQSIIDDFTMELLDKLPRTVRGMGMELIGGHQPITFGEGFHQGKHHRLGNLAGFIAVQWFLEPRVLLGDVAVENR 842          
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.280e-18
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:    1 MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGMTLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR 100
            M AGVS+ LR ++VD PMH   L  LQ I+D   +++L++LPQTVRGMG+ LL    P     GL+Q +   L NLAG++VV+WILEP LL  +    K+
Sbjct:  801 MAAGVSRTLRMSKVDFPMHSEGLGRLQSIMDDFTSKVLEQLPQTVRGMGVALLGGHQPIVFGEGLEQGKRHRLTNLAGFIVVQWILEPNLLVGKINTQKK 900          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1434.3356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX79_ECTSI1.100e-5898.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JB40_9PHAE7.130e-5897.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LH99_ECTSI2.230e-2050.00Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LHA0_ECTSI1.280e-1848.00Transient Receptor Potential Channel. Partial sequ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1434contigEcto-sp13_S_contig1434:9998..10878 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1434.3356.1mRNA_Ecto-sp13_S_contig1434.3356.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1434 9983..10878 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1434.3356.1 ID=prot_Ecto-sp13_S_contig1434.3356.1|Name=mRNA_Ecto-sp13_S_contig1434.3356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MGAGVSKNLRRAEVDCPMHRAKLRCLQQIVDHLINQLLDKLPQTVRGMGM
TLLRPMVPHHRLPGLQQHRLDTLANLAGYMVVEWILEPRLLNRQATVGKR
*
back to top