mRNA_Ecto-sp13_S_contig1433.3352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1433.3352.1
Unique NamemRNA_Ecto-sp13_S_contig1433.3352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1433.3352.1 vs. uniprot
Match: D7G176_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G176_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-19
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 3 
Query:  552 AKFVGKAEQNDQCTLDRTIFDQAQRQIYNLIETDLFPRFIQYVSQCQVNS 701
            AKFVGKAEQN+QCTLDRTIFDQAQRQIYNL ETD+FPRFIQYV QCQ  +
Sbjct:   11 AKFVGKAEQNNQCTLDRTIFDQAQRQIYNLTETDIFPRFIQYVRQCQART 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1433.3352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G176_ECTSI1.140e-1986.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1433contigEcto-sp13_S_contig1433:10688..13988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1410
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-13_002010.1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.9950979-UTR-Ecto-sp13_S_contig1433:10687..113901681462765.9950979-UTR-Ecto-sp13_S_contig1433:10687..11390Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1433 10688..11390 -
1681462766.0262341-UTR-Ecto-sp13_S_contig1433:13674..139881681462766.0262341-UTR-Ecto-sp13_S_contig1433:13674..13988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1433 13675..13988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.006286-CDS-Ecto-sp13_S_contig1433:11390..115461681462766.006286-CDS-Ecto-sp13_S_contig1433:11390..11546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1433 11391..11546 -
1681462766.0176604-CDS-Ecto-sp13_S_contig1433:13437..136741681462766.0176604-CDS-Ecto-sp13_S_contig1433:13437..13674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1433 13438..13674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1433.3352.1prot_Ecto-sp13_S_contig1433.3352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1433 11391..13674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1433.3352.1

>prot_Ecto-sp13_S_contig1433.3352.1 ID=prot_Ecto-sp13_S_contig1433.3352.1|Name=mRNA_Ecto-sp13_S_contig1433.3352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MVHGAVLRPPAFEGAYYRLVINLTRACASRRLGSVVGSQQTALSTAKNTG
CSLCYWRGPAMLLVNAGPPRRQCSDVMAGAKFVGKAEQNDQCTLDRTIFD
QAQRQIYNLIETDLFPRFIQYVSQCQVNSR*
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mRNA from alignment at Ecto-sp13_S_contig1433:10688..13988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1433.3352.1 ID=mRNA_Ecto-sp13_S_contig1433.3352.1|Name=mRNA_Ecto-sp13_S_contig1433.3352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1433:10688..13988- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACTTATGTCTAGAGAGGGGGTGAGGGGGGAGTGGGGGGGGGAACACA
AGCCACACGCTGGTACCTCCGCGCCAGGCGAAACTGCTTGAGTTTTGCGC
AAGCACCTTTTCCGGGCGGACCTGGCACATTAGTAGCGCGAAAAGAAAGT
GCCACCCCGGACAGCGGCGATCGCTGTGCGGACGACGTGCACGCCATTAG
AAGGAGTTGAACGGACCAAAATCTTCTCACAACGTCCGGAACTCAGCGAC
TCCACGCCGTTTGCTGCGCTACGAACTTACGTATGTGGGGAAAAGTAAGT
CATGCGCTGTCTGAATGGTGCATGGTGCGGTTCTTCGCCCGCCCGCGTTT
GAAGGAGCCTATTACCGACTGGTGATTAATTTAACAAGGGCTTGCGCGAG
TCGTAGACTAGGTAGTGTCGTTGGCAGTCAACAGACGGCGCTTTCAACGG
CAAAAAACACAGGGTGCTCACTCTGCTACTGGAGGGGGCCTGCTATGCTC
TTGGTGAATGCGGGGCCGCCCCGGCGCCAGTGTTCGGATGTCATGGCCGG
GGTGAGATGCGTTTGGCGTGGCAAGTGCACCACGTTCTGCAAGATATGCT
GATCCGATGCAACTAGCCCGGCTGGGAGCCGAGATAGCATGGCGCAGCAC
ACTACTCGAGCTCGAGGTCTATTACGAGGATATAGGTCTCTGCTGCTGTA
CGTGAGTCTATGCAGCGTGCGTTCGCCGACGGGAACGGATATGGCCCATG
CCAACGCAACCAAGGCGCATCTAACGCCTCTGGGCAATCGGTTCTACCCA
CATCCTCTACGAAAACGTACGGAGACAGCAATGCACCGGCGAAAATCGGC
GAAACAAACTACATACCTCGGCCACCTGGCCCCCATGCACTCCGCACGTA
GCGCCCCCCCTCGTCCGAGAGACGCTGGAACCGAGTATTTCACCTCGTAT
CACAGGCAAAGCGGCGAAAGGGTACGAAAAAGCACCTCCTGGCAGGCCGC
TGCGCGCCTCATGGCAAAATCCTTCGCTTTTTTGTCTGTGATATTCTCTA
CAGCTAAGAAGGATACAACCCGATGCTAGCCTCTAAAGGGAAGATGGAGC
GGTTTCATCAGCAAGATTCGATACTGTTAACTAGACAACTGCTGCTTTGG
CAGACCACCGACACACTTGACACTGAAAGATCAGCATGAATTCTTGGGGC
TCGTAGGTACTTGTTCTTTTTTCTCGCTTTCTTTCCGGTCATTCTTCGTG
GAAGAGATGCGAAGACTATGTACGGGAACGTGATAAACATTGAAATGTCA
ACCTTCATCTTAGGCTTGTTTTCTCTTAAATATGATAGTGCGGTGAAGAT
GTGGAGCTGTAGCCGAGGAGTGAGCCACGCAAGCAACCCGCCCTGCATCC
TGCTTGTCCGCCCAAACGAACGATCACGTCTATGAGACACAGAGTCCTGT
TGTCATATGCATGGATGATTGCAACCAACTGTAAGCAACACCTGGTGTTT
TTCATTTTGCTGTGTACCAGGTAGTGTTTATGGGGGTCACAGCGACAAAG
CAACACTATTTGGGGTGGTGTACTAGCCCTCCGGTCAGCATACAGCACAA
TAGAAACTTCGGGGATAGCCATTTTTAATCCTCGCCTTGGAGGTACAGTA
GGTACCGGTAGGTGACACCGATTGCTGGTTTGCGGTAAATTACCGTAGAA
AAAGGGGTGAACTGAGTATTGTACTTGACTGATATTTGTGCTCCCCCCCC
CGCGATAACCCCCCCCGGTGTTTGCCATCGGGGTTGGTTTTTCGTCGCTT
GGCAACGACGTTGTAAAACTTGCCGCTCCCCCCGGTGTTTGTCATCGGGG
TTGGGGTTTTCGTCGCTTGGCAACGACGGTGTAAAACAAGCCCCCCCCTC
GGTGTTTGCGATCGGGGTTGGGGTTTCGTCGCTTGGCGACGACGTTGTAA
AACAAGCCAAGTCACTTGAACTCGGCAACCAGGATACCTTTTTTTTTTAC
CTCTTCTTTTTTGGCGGTGACCGTAATGGTGGTCGAGTAGATCATGTTGC
GCGGGGTGGAGAAACCTCACTCCGCGCAAGGGGGATGATCGCAATACGTT
GTGTTAAAGTGTTCAACCATCCTCGAGGCAATTACACAGTGCTTACATTT
GTCTCTGGAAGTGAACGCACCAGAAAATGAATTAAGTCATACGCAGCTGT
CGTCCATACGCAAGGAAGTAAGCACAAGATGCCTAACACACTTAGCAGGA
TGCAGCGCACCCTTCACGCGACTCTCTGAATACCTCACGGCGCTTCGCGC
TTGGTGATGTAGAGCTTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCAG
CTTTGTAGGGATGCGAGATCAATGGTCTAGCGACTATGGCATGCACGACT
ATGAGTCCCCCCCCCCCGCGATACCCCTCGTTTTCGTCTCAGGCAAAGTT
CGTTGGCAAGGCCGAGCAAAACGACCAGTGCACGCTGGACCGCACCATCT
TCGACCAAGCGCAGCGGCAGATCTACAACCTCATAGAGACCGATTTGTTC
CCCCGCTTTATTCAGTACGTTAGTCAATGCCAGGTAAACTCGAGGTAGCC
AGGTTGCCTTATATAAGATAACTTGGAAGCGTCGGGCTTGGTGCTTTGTT
TCAAACTCTAATTCCTCGCTGAACCTTGACAAGCCAACACCGCGGGGACT
GGTGTTTTAAAGTTTCTTTAGCCACCGGTTAAAATGCTGAGGTCGCCACA
GGTGGAGGTATGTTATTCGAGTGGGTTCCAGTTGGCGTCCGCTTTCATCG
CATACCAAATGTTTTGCATCATATGCATGTCAAATACAACCGGCATTTGT
ATTTTCCCCTGTCTCGAGGGCACATGACTTTCTTTGCCAGCCTTGAGAGA
GTTACCGTTGTCTTCGTCACGTGGGGTGAGAGGTGCAGCGTTGTATGAAA
AGAGGGTACATGTAGATTGTCGAAAGGCCACGGAATACACCGGGATGTAC
CTGCTGCCCCCGATACCCCGATGTTTGATCGTTCCATGGAGGTCTTGGTA
TCCTAGAAAACCTTGTAACGAGGGCCAGCGGTTCGAGTCCCGGTGTAAGC
GAGAGTGAAAGCGCTGGTTCGTGCGTACACACAGGGAAGAGAGTGCTGCA
CTCTTCTCGCATGAATAATCGAACGCATTTTAGCGCGTGAGGGGAGTTGG
GGGCTCAATGGAGGGGAATCCTTCTGTGTGACCACGGGTTGGAGTAAACG
ACACAAGTGCTGTGAGCGCTGATTGGAAGTGAAGACAAAAAACAACAAAA
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1433:10688..13988-

>mRNA_Ecto-sp13_S_contig1433.3352.1 ID=mRNA_Ecto-sp13_S_contig1433.3352.1|Name=mRNA_Ecto-sp13_S_contig1433.3352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1433:10688..13988- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCATGGTGCGGTTCTTCGCCCGCCCGCGTTTGAAGGAGCCTATTA
CCGACTGGTGATTAATTTAACAAGGGCTTGCGCGAGTCGTAGACTAGGTA
GTGTCGTTGGCAGTCAACAGACGGCGCTTTCAACGGCAAAAAACACAGGG
TGCTCACTCTGCTACTGGAGGGGGCCTGCTATGCTCTTGGTGAATGCGGG
GCCGCCCCGGCGCCAGTGTTCGGATGTCATGGCCGGGGCAAAGTTCGTTG
GCAAGGCCGAGCAAAACGACCAGTGCACGCTGGACCGCACCATCTTCGAC
CAAGCGCAGCGGCAGATCTACAACCTCATAGAGACCGATTTGTTCCCCCG
CTTTATTCAGTACGTTAGTCAATGCCAGGTAAACTCGAGGTAG
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