mRNA_Ecto-sp13_S_contig14263.3308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14263.3308.1
Unique NamemRNA_Ecto-sp13_S_contig14263.3308.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A6H5KSV7_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV7_9PHAE)

HSP 1 Score: 465 bits (1197), Expect = 3.560e-164
Identity = 235/245 (95.92%), Postives = 238/245 (97.14%), Query Frame = 1
Query:   16 MRDRLMQILAGGLPSGVVSTGREVTLVEESPSGATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSGGSFEGSL 750
            MRDRLMQILAGGLPSGVVST REVT VEESPSGATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGG+GGGNDDAIYSGIRIQYGVA AGQRPEGSERE+HQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRL  L SG +FEGSL
Sbjct:    1 MRDRLMQILAGGLPSGVVSTSREVTSVEESPSGATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGSGGGNDDAIYSGIRIQYGVALAGQRPEGSERELHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLADLNSGAAFEGSL 245          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: D8LRC6_ECTSI (Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC6_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 1.420e-159
Identity = 232/249 (93.17%), Postives = 238/249 (95.58%), Query Frame = 1
Query:    4 LFTIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSGATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSGGSFEGSL 750
            LFTIMRDRLMQILAGGLPSGVVST REVT VEESPSGA LRFADGS EGPFDLVVGADGIKGAARKAVRAGPGGG+GG NDDAIYSGIR+QYGVAPAGQRPEGSERE+HQWFGGDTYGLSATYQGIGDKKFEMVAA+YQDRDRKEENAVWDQVEAKGACLRRLDER FP+EMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLA RL  L SG +FEGSL
Sbjct:  181 LFTIMRDRLMQILAGGLPSGVVSTSREVTSVEESPSGAKLRFADGSTEGPFDLVVGADGIKGAARKAVRAGPGGGSGGDNDDAIYSGIRVQYGVAPAGQRPEGSERELHQWFGGDTYGLSATYQGIGDKKFEMVAALYQDRDRKEENAVWDQVEAKGACLRRLDERRFPREMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLARRLADLNSGAAFEGSL 429          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A836CJN1_9STRA (Monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN1_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.260e-73
Identity = 132/244 (54.10%), Postives = 167/244 (68.44%), Query Frame = 1
Query:    1 QLFTIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSGATLRFADGSA-EGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSG 729
            + + IMRDRL Q+L   LP G +  G+EVT +E++  G +LRF DGSA + P+D+VVGADGI GA + AV         G    A+ SG+RIQ GV  AG RP G++ E+HQWFGG+TY L+ATY GIG K  EM+A VYQDR    EN  W   +     + RL+ER FPQE+  +A+  DRF+++GV YRNPL  W S  +G++VLLGD+AHAMPP LGQGANQAIQDAYCLA RL  L+ G
Sbjct:  137 KFYAIMRDRLQQMLLAQLPDGCLQLGKEVTNLEQTDKGVSLRFRDGSASQRPYDMVVGADGIAGAVKAAVS--------GTETPAVDSGLRIQLGVG-AGNRPSGADSELHQWFGGNTYALTATYGGIGGKS-EMIAIVYQDRKPMGENIGWQTADVTQDAVTRLEERCFPQEVVNVAKGCDRFFQVGVRYRNPLTKWSST-DGRMVLLGDSAHAMPPTLGQGANQAIQDAYCLAERLQALKRG 369          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A7S1UMX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMX4_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.700e-63
Identity = 116/244 (47.54%), Postives = 150/244 (61.48%), Query Frame = 1
Query:    7 FTIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSGAT-LRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKE--ENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSG 729
            + +MRD L ++L   L +  V  G++V  + E   G   L FA+G A G FDLV+ ADGI+    +A  A  G         AIYSG RIQYGV P  +RP G +   HQWFG   Y L ATY G G  + +MVA V++D       ENA WD  + +G C+RRL     P+E+ ALAEA++RF+ELGVY+  P   W +  +G+VVL+GDAAHAMPP LGQGANQA+QDAYCLA  L  + +G
Sbjct:  125 YAVMRDALQRMLRRSLRTSRVELGKDVQRIVEGADGKVGLEFANGEASGGFDLVIAADGIRAGVLEAAGAAAGA--------AIYSGKRIQYGVIPEAKRPPGEQSAFHQWFGKGVYSLCATYGGEGGARSDMVALVFRDDGGSAAGENADWDAADIRGDCVRRLRAAAMPEEVVALAEAAERFFELGVYFHLPRPSWRAGSKGRVVLMGDAAHAMPPFLGQGANQAVQDAYCLAAALRDVNAG 360          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A812I7S9_9DINO (PrhF protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812I7S9_9DINO)

HSP 1 Score: 208 bits (529), Expect = 9.090e-61
Identity = 121/234 (51.71%), Postives = 150/234 (64.10%), Query Frame = 1
Query:   10 TIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSG--ATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNP-LEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLA 702
            T+MRD L++ +A  LPSG +  GR++  V+ SP G  AT RF  G  +  FDLVV ADGI  +AR+ V        G   +   Y+G+RIQYGV  AG RP G E E HQWFG   Y L+ATY G+G K+FEM+A V+++     ENA WD VE K +CL+RL E G P E+  +AE   RF+ELGV+ R   L  W      +VVLLGD+AHAMPP LGQGANQAIQDA CLA
Sbjct:  194 TVMRDALLEAMAKSLPSGSIRLGRKLLDVQMSPGGQSATCRFEAGQED--FDLVVAADGIGSSARRFVLD-----EGDQEEAPRYTGLRIQYGVREAGGRPAGCEEEAHQWFGQGVYALTATYGGLGGKRFEMMAVVFREDAPAAENADWDPVEIKDSCLQRLREAGHPAEVMEVAEGCSRFFELGVFERPVGLSNW---HRDRVVLLGDSAHAMPPFLGQGANQAIQDAVCLA 417          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A7S2RL63_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL63_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.850e-60
Identity = 120/248 (48.39%), Postives = 156/248 (62.90%), Query Frame = 1
Query:    7 FTIMRDRLMQILAGGLPSGVVSTGREVTLVEESPS--GATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDA--IYSGIRIQYGVAPA-GQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWV-------SRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLG 714
            FTIMRD L+++LA  LP G+V  G+ +  +E S    G    F D S E  FDLVVG DGI+ A R+ V  G        ND A   YSG+RI++GVAP+ G R  GS  E+HQWF    Y L+ATY G+G ++++M+A    D++    NA WD  E +    R L++ GFP E+ ++AE+S RF+++GV ++NPL  WV       +RG    VLLGDAAHAMPP LGQGANQAIQDAYCLA  LG
Sbjct:  130 FTIMRDELLRMLAARLPEGMVRYGKRLEGLERSDGEEGIQCTFDDASTE-TFDLVVGCDGIRSAVREWVLEG--------NDGARETYSGLRIRFGVAPSCGGRGAGSREEMHQWFADGAYALTATYGGVGGEEYDMIALTTTDKNEVGPNANWDSSEVQQDTCRILNDLGFPGEVLSIAESSTRFFDIGVRFQNPLLPWVRSDGNFWTRGSAAAVLLGDAAHAMPPFLGQGANQAIQDAYCLAEELG 368          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A812YRU2_9DINO (ZEP protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YRU2_9DINO)

HSP 1 Score: 203 bits (516), Expect = 6.540e-59
Identity = 125/255 (49.02%), Postives = 154/255 (60.39%), Query Frame = 1
Query:   10 TIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSG--ATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAI--YSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNP-LEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAG---RLGHLQSGGSFEGSL 750
            T+MRD L++ +A  LP G +  G ++  VE +  G  AT RF  G  E  FDLVV ADGI   AR  V         G  D+    Y+G+RIQYGV  AG RP G E EVHQWFG   Y L+ATY GIG K+FEM+A V+++     ENA WD  E K +CL+RL + G   E+  +A+  +RF+ELGV+ R   L  W     G+VVLLGD+AHAMPP LGQGANQAIQDA CLA    R+G     GS E  L
Sbjct:  190 TVMRDALLEAMARELPPGSIRLGTKLLDVETNSDGQAATCRFESGEEE--FDLVVAADGIGSRARSCVL--------GEEDEEAPRYTGLRIQYGVREAGGRPAGCEEEVHQWFGQGVYALTATYGGIGGKRFEMMAVVFREEAPAAENADWDPAEIKDSCLQRLQQAGHAGEVLEVAKGCERFFELGVFERPVGLNRW---HRGRVVLLGDSAHAMPPFLGQGANQAIQDAVCLARWLRRVGFADGPGSLEAGL 431          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A7S2XFF1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFF1_9EUKA)

HSP 1 Score: 199 bits (506), Expect = 1.040e-58
Identity = 115/245 (46.94%), Postives = 149/245 (60.82%), Query Frame = 1
Query:    7 FTIMRDRLMQILAGGLPSGVVSTGRE-VTLVEESPSGAT-LRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKE--ENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSG 729
            FTIMRD L ++LA  L  G + T +  V L  + P+G   L F DG+ E   D+V+GADGI+   +K    GPG        D  Y+ IRIQ+GVA   +R     +E+HQWF   TY LS  Y+G+  K FEM A V+ D +  E  EN+ W+  E K  CLRRL E G P+E+  L +  +RF+E+GV+Y   L  W S   G+ VL+GDAAHAMPP LGQGANQAIQDA+CL  +L  L+SG
Sbjct:   61 FTIMRDSLQKVLADSLDEGTIQTNKRLVGLKHDEPTGGVRLTFEDGTEE-LVDMVIGADGIRSTVKKETFPGPG-------RDPTYANIRIQFGVAEGWERAPEYAQELHQWFSEGTYALSGQYRGLEGKPFEMFALVFADDNDSEDAENSKWEPNEVKQDCLRRLSETGQPKEVVELCQRCERFFEIGVFYYPSLNPWTSPS-GKTVLIGDAAHAMPPFLGQGANQAIQDAFCLGQKLSELKSG 296          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: R1CJR6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CJR6_EMIHU)

HSP 1 Score: 201 bits (511), Expect = 1.600e-58
Identity = 123/251 (49.00%), Postives = 152/251 (60.56%), Query Frame = 1
Query:    1 QLFTIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSGATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAG-QRPEGSEREVHQWFGGDTYGLSATY-QGIGD-KKFEMVAAVYQDRDRKE----ENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSGG 732
            Q F+IMRD L +ILA  LP G V  G+ +  + E  +G  L F  G+AE  FDLVVGADG+    R+ V A      GGG     YSGIR+Q+GV PAG  RP GSE E HQWFG   Y L+ +Y  G  D    +MVA V+ DR        EN+ W+  + +  C+ RL   G P E+ ++AE  +R +ELGVY  +    WVSRG G+ VLLGDAAHAM P LGQGANQAIQD YCLA RL   ++GG
Sbjct:  135 QAFSIMRDALQRILADSLPVGTVRLGQRLESLREDDAGVELLFEGGAAE-RFDLVVGADGLSSRVREHVAASHAAEGGGGATPPEYSGIRVQFGVVPAGGARPAGSEGEFHQWFGEGVYALTGSYGTGAADGATSDMVAVVFADRAAGSAAPPENSNWEASDVREDCVGRLRRAGIPAEVVSVAEQCERCFELGVYEHDATAPWVSRG-GRAVLLGDAAHAMAPFLGQGANQAIQDGYCLADRLAAARAGG 383          
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Match: A0A812IQC8_SYMPI (ZEP protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IQC8_SYMPI)

HSP 1 Score: 200 bits (508), Expect = 9.320e-58
Identity = 124/255 (48.63%), Postives = 153/255 (60.00%), Query Frame = 1
Query:   10 TIMRDRLMQILAGGLPSGVVSTGREVTLVEESPSG--ATLRFADGSAEGPFDLVVGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGSEREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVEAKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNP-LEGWVSRGEGQVVLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQ-----SGGSFEGSL 750
            T+MRD L++ +AG LP   +    ++  V+    G  AT RF  G  E  FDLVV ADGI   AR  V      G  G  ++  Y+G+RIQYGV  AG RP G E EVHQWFG   Y L+ATY GIG K+FEM+A V+++     ENA WD  E K +CL RL   G P+E+  +A   +RF+ELGV+ R   L  W      +VVLLGD+AHAMPP LGQGANQAIQDA CLA  L  +      SGGS E +L
Sbjct:  184 TVMRDALLEAMAGALPDDSIRLSTKLLEVQTGAQGQSATCRFDSGQEE--FDLVVAADGIGTRARSFVF-----GEEGQEEEPRYTGLRIQYGVREAGGRPAGCEEEVHQWFGQGVYALTATYGGIGGKRFEMMAVVFREEAPVAENADWDPAEIKDSCLERLRSAGQPEEVLQVAAGCERFFELGVFERPVGLNRW---HRDRVVLLGDSAHAMPPFLGQGANQAIQDAVCLARWLRRVNFAKEASGGSLETAL 428          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14263.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSV7_9PHAE3.560e-16495.92FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D8LRC6_ECTSI1.420e-15993.17Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CJN1_9STRA1.260e-7354.10Monooxygenase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1UMX4_9STRA5.700e-6347.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812I7S9_9DINO9.090e-6151.71PrhF protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S2RL63_9STRA1.850e-6048.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812YRU2_9DINO6.540e-5949.02ZEP protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxI... [more]
A0A7S2XFF1_9EUKA1.040e-5846.94Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
R1CJR6_EMIHU1.600e-5849.00Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A812IQC8_SYMPI9.320e-5848.63ZEP protein n=1 Tax=Symbiodinium pilosum TaxID=295... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14263contigEcto-sp13_S_contig14263:1..4119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score452.2
Seed ortholog evalue1.5e-124
Seed eggNOG ortholog2880.D8LRC6
Model size750
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
EC1.14.13.1
Cds size735
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14263.3308.1prot_Ecto-sp13_S_contig14263.3308.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14263 1..4104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.6890574-CDS-Ecto-sp13_S_contig14263:0..661681462762.6890574-CDS-Ecto-sp13_S_contig14263:0..66Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14263 1..66 -
1681462762.7045991-CDS-Ecto-sp13_S_contig14263:1221..13201681462762.7045991-CDS-Ecto-sp13_S_contig14263:1221..1320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14263 1222..1320 -
1681462762.7171226-CDS-Ecto-sp13_S_contig14263:2210..23641681462762.7171226-CDS-Ecto-sp13_S_contig14263:2210..2364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14263 2211..2364 -
1681462762.726321-CDS-Ecto-sp13_S_contig14263:3157..32771681462762.726321-CDS-Ecto-sp13_S_contig14263:3157..3277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14263 3158..3277 -
1681462762.7355216-CDS-Ecto-sp13_S_contig14263:3808..41041681462762.7355216-CDS-Ecto-sp13_S_contig14263:3808..4104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14263 3809..4104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.7448988-UTR-Ecto-sp13_S_contig14263:4104..41191681462762.7448988-UTR-Ecto-sp13_S_contig14263:4104..4119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14263 4105..4119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14263.3308.1

>prot_Ecto-sp13_S_contig14263.3308.1 ID=prot_Ecto-sp13_S_contig14263.3308.1|Name=mRNA_Ecto-sp13_S_contig14263.3308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MRDRLMQILAGGLPSGVVSTGREVTLVEESPSGATLRFADGSAEGPFDLV
VGADGIKGAARKAVRAGPGGGTGGGNDDAIYSGIRIQYGVAPAGQRPEGS
EREVHQWFGGDTYGLSATYQGIGDKKFEMVAAVYQDRDRKEENAVWDQVE
AKGACLRRLDERGFPQEMRALAEASDRFYELGVYYRNPLEGWVSRGEGQV
VLLGDAAHAMPPNLGQGANQAIQDAYCLAGRLGHLQSGGSFEGSL
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mRNA from alignment at Ecto-sp13_S_contig14263:1..4119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14263.3308.1 ID=mRNA_Ecto-sp13_S_contig14263.3308.1|Name=mRNA_Ecto-sp13_S_contig14263.3308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14263:1..4119- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGTTCACCATCATGCGCGACCGCCTCATGCAAATCCTGGCCGGCGG GCTTCCCTCCGGCGTGGTGAGCACGGGCCGAGAGGTCACCTTAGTGGAGG AATCCCCTTCGGGAGCCACGCTCCGCTTCGCGGACGGCTCGGCGGAAGGT CCGTTCGACCTCGTCGTCGGGGCGGACGGCATCAAGGGGGCCGCGCGGAA GGCGGTTCGAGCAGGACCGGGGGGAGGCACCGGCGGCGGCAACGATGACG CCATATACTCCGGGATTCGAATCCAGTACGGGGTAGCGCCGGCGGGGCAG AGGCCGGAAGGGTAAGCGAACATTGTCATGGCTGTTTTTGTTTTGTTTCC CGGCTTGGACGTGTGTCGAGCAGGGAAGCTATGTTGCTGCGGAAGCCTGG GAACCATCACTAACTGCCGTTTCACCGCGAGAGTGCAAGGGTTACACATG TCGCATTCATCCAGGGTTTGCACGGGCACCTGTCTTTCCTATTTCTTCAG GTACGTGCTGCCCCCCCCCCCCCCCTCCTCCCCACCCCCCGCACCCCCCC CCCCCTTCTCCTTCTCCTCCCCTCTCCACCCCTCCCTCACCTCCAGCCCN NNNNNNNNNCCCGGGTTTTCCCGGGCCCCTTCCTTTCCCTTTTTTTCAGG TACGGTCTTCCCCCCCCCCCCCCACTCTCCCGAAAGTTCTCCTCGCCACC TTTGTTTTTTTTTTCTCCGACCACACCCCCCTCAATCACCTTAAAAGCCT CCGGCCTACGTAGCCATCGCGCCCCGCCTCGACCCCCGCGCAATCCAGAG ACAACAAGCGTGACCGGCACAACATGGTCATTTGGCTTTCAGGTCCGAAC GAGAGGTGCACCAGTGGTTCGGAGGCGACACGTACGGGCTGAGCGCCACT TACCAGGGCATCGGGGACAAGAAGTTCGAGATGGTGGCGGCCGTGTACCA GGACCGTGACAGGTGACTTGCAGATCAGGTTGATGATTTGATGAGGAAGA CTCTTGTTTTCATTGGCGTTGCAACGGTTTTGCTACCTCCTGGCTGTTGT TGGTTCTTCTTTTCGAGATCTTGGTGGCATCCAATCACAGCAGTCATACA TGACCTTGTATACAATTCGTTTTTGTGGAAAACACAAAAAGACTACCTTC CCAAAGGACTGGTGGCCTTTGATCGCTCGGTTGGTAGAGAAGCGGCCAAG GCTCTGCGGAACTTTTGGAAAAGTGGTTGTAGTACGGTTACAGCACCTAC CCGCCCCCCCTCGCGTCCCGCACTCCCCACCCCCTTGATGACATGCTCAC TGATAGGGCGACCCCGCGTCGCTGTAAGGTCACGGGGGCCTACAGCCCTA CCTTGCGCTGCTGATCACGCATGCCATACGAAACATAGCCGCGGGTCAGC TTTTCCGAACTCGATATCCCCCGCAAGAGGTAGAGAAGGAGTAACGTTCA TGGCCGCGCAACGGTGTGGCTTCGGAAACGTGTTGACGACAGCTCTCCCT AAAACTCGCGTTCGGTACAAGCGCCGTCTTCGTTGTTGAGTAGGCCTGTG TTGGGTTTTTCGGCCTGCACGGGGGGCGAACCTGTGTGCGCTTCCCATGA CGTACAAGCGGATCAGGCCAATAGCTCAGGTCGTTTCACTCGTTGCCCTT TCTCCTATTCCATTTTGAAAGATGTACGACAACATAGTGCCATGCACAGC GAGCTCGCGGGCTACATCATCTGCTCCTGTTGCTGGTGTCGACCCGAACG CGCAGAAAAGAAGAGAACGCCGTATGGGATCAAGTGGAGGCCAAGGGCGC GTGCCTGCGGAGGCTTGACGAGAGGGGGTTTCCTCAAGAGATGAGGGCGC TGGCGGAGGCGAGCGATCGGTTCTACGAGCTCGGCGTGTACTACAGGAAT CCGCTGGAGGTACAACCTATAGAAGCCGAAATCAAACCATTTGACTAGTC AGCGCTGACTTGTCTGATGGTTTGATTTCGGCTCCTTAAAAGCGCAACAT AAGTCTGTAGCTGTTGGTTCCGAAATAAGAACGTCACGCGGATGCCGAAC CGGATGCGTGCAGTCCGTCCCAGTCAGCGTGTGCTGTAAGTATCTGTGTA CCCGTTCATGAGGAGGGCTCCAGCCTTGGGGGGCGAAGCAGTGCTGTTTG TACCCCCCGCCTTGGTAGTCGAAAGCGAAACGAACAGCCTCAGAAAGCGT CAAGGCTGCCTGATGCAGCTCAACACTCCCCACGGCGTTTTTGAACGTGC CCATGTATTTGACAATCCCAACGACGTGTTGCGCCCCGGGGCTGTGGTAG AGAGAGGGACAGTCTCGACCTCGACGCCCCTTGAAGACCTGTTACCCCTT GAAGACCAGTACAGTAAGCAGCCAGACATGGTGGCAACTCGATTAGTGGA ATTGCCGATGTGGTGGCATCAAAATCTCTTGTCACAATCTCAACATGCAC ATGTAACCCATGCACTTCTATAGGACAGTGGCACTGGGTCCTGAATAGTG CCATTTCTCCTCTTGCCCCTCCATGCCACTATGTCGGGCTGCTTACTGTC CTGTTCTACGACGGGGAGTTACTGCTGTCTTTTTTGAGGTCCACCACAAG AGTGTTAGTTGCACTCTGAAGCCCGCCGAAACTGAAAAACCGGCATAGCA TTCCTCCGTCCCGGCATGTAGTGATGCGAGGTTAATGGTCTAGTATCGGC TACAGCATGCGTTACACCCCCTTTGTCCACTTTCAACACGTTGCTTTTGC CCCCGATTTCTCTTCTTTCTTCATCTTCTTCCGCCGACATGATCGGAAGG GTTGGGTGAGCCGAGGGGAAGGGCAGGTGGTTCTCCTGGGAGACGCCGCG CACGCTATGCCGCCTAACCTCGGCCAGGGGGCAAACCAGGCGATCCAGGT ACAGTACCATTCGTGTATGGAATATGCGTGCCGCCGTGGGCGGGGTCTCT GTTTTGTCTGATGATTGGCAGCTCTGTCCTTGTGGCTTGTGTAGTATATG TACCGCATTTGGTTCTGACGCGGCCTTTTGGAAAGTGTGGTGACGGAAAG GCAGGGTTGGGGGGAGGTTCCAAGCTCGCAGGCATCTTCTCTCGAGAACC TCCGCTTGTGCCCGACATGTAACATAGCTGCCGTACTCACCCGGTTTCCC TCCACTCACTGCAAAGACCCCAACACATCCCCTTCGACTGTGGTTTACCT CGAACGGGTACGCTTTCTGCGTTTCTATTTATTTTTCCTAATACATGCCA GTACTTGGAAGAATGTTTCCTTTCGAACGTTTGCCCGCCGCGACCGCACC ACCTGACACATCTCAGCAAGAGCATTGGTGTTGATCTCGAGGCTCGGGGG CGTCGAGTGTCGAGGGCAGAGAGTCCGTCTCGATCAAAACGACTGTTTGT TGGTGTCGCGGCAGCTCAAGACCCCCCCCCCTCCTTGAACGCACCCGAGT GACCCGAAGGCCTTGTCACCTATGCGGGTTGATAGGTAAATTTGTAGCAC GCGTGTGTCCACCGGAGTCAATAGCGTTCCACAATTGAACATCCGCTTTC TCCCCCCCCATCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTTTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCCCCAAACG TATTTCACCCCCGCCCTCGCCCCAATGCTCTCGTCTTTTTGAACTTGGTG AAGAAAGCTCTCGCGCTGTAAAATAAAAATTGGAATATTAGCCACCGACG GCCACCAAAAGGTCAGAAGCAACATCTCCTTTTAAGTGGAACGCATGCGA ACCTCAAACAGCACCATACAACATTGCCCGACTTGGTGGGTAGCTCGACC AAGAGCGTGCGGGATCAAGGCTTGGCGGTGAACGCTTGCGTGGTCAACGG CCGAATGACGAGGGTCAACCACAAAATTGATACCCCCGCATACCCCCCCC CCCCCTCACCTTTAGGGATGCGAGGTCAATGGTCAAACGACTAACGCATG CGTTTGCTTGATGAGTACCCCTCCCCCCCCCCCCCACCCCCGGCATACAA CAGGACGCGTACTGCCTCGCGGGACGCCTGGGCCACCTCCAAAGCGGGGG TTCCTTTGAGGGAAGCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14263:1..4119-

>mRNA_Ecto-sp13_S_contig14263.3308.1 ID=mRNA_Ecto-sp13_S_contig14263.3308.1|Name=mRNA_Ecto-sp13_S_contig14263.3308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14263:1..4119- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGACCGCCTCATGCAAATCCTGGCCGGCGGGCTTCCCTCCGGCGT
GGTGAGCACGGGCCGAGAGGTCACCTTAGTGGAGGAATCCCCTTCGGGAG
CCACGCTCCGCTTCGCGGACGGCTCGGCGGAAGGTCCGTTCGACCTCGTC
GTCGGGGCGGACGGCATCAAGGGGGCCGCGCGGAAGGCGGTTCGAGCAGG
ACCGGGGGGAGGCACCGGCGGCGGCAACGATGACGCCATATACTCCGGGA
TTCGAATCCAGTACGGGGTAGCGCCGGCGGGGCAGAGGCCGGAAGGGTCC
GAACGAGAGGTGCACCAGTGGTTCGGAGGCGACACGTACGGGCTGAGCGC
CACTTACCAGGGCATCGGGGACAAGAAGTTCGAGATGGTGGCGGCCGTGT
ACCAGGACCGTGACAGAAAAGAAGAGAACGCCGTATGGGATCAAGTGGAG
GCCAAGGGCGCGTGCCTGCGGAGGCTTGACGAGAGGGGGTTTCCTCAAGA
GATGAGGGCGCTGGCGGAGGCGAGCGATCGGTTCTACGAGCTCGGCGTGT
ACTACAGGAATCCGCTGGAGGGTTGGGTGAGCCGAGGGGAAGGGCAGGTG
GTTCTCCTGGGAGACGCCGCGCACGCTATGCCGCCTAACCTCGGCCAGGG
GGCAAACCAGGCGATCCAGGACGCGTACTGCCTCGCGGGACGCCTGGGCC
ACCTCCAAAGCGGGGGTTCCTTTGAGGGAAGCCTC
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