mRNA_Ecto-sp13_S_contig10016.34.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10016.34.1
Unique NamemRNA_Ecto-sp13_S_contig10016.34.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10016.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10016contigEcto-sp13_S_contig10016:3955..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons3
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462500.6778522-UTR-Ecto-sp13_S_contig10016:3954..39701681462500.6778522-UTR-Ecto-sp13_S_contig10016:3954..3970Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10016 3955..3970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462500.6882222-CDS-Ecto-sp13_S_contig10016:3970..40331681462500.6882222-CDS-Ecto-sp13_S_contig10016:3970..4033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10016 3971..4033 -
1681462500.7007306-CDS-Ecto-sp13_S_contig10016:4687..47761681462500.7007306-CDS-Ecto-sp13_S_contig10016:4687..4776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10016 4688..4776 -
1681462500.7133207-CDS-Ecto-sp13_S_contig10016:4970..50461681462500.7133207-CDS-Ecto-sp13_S_contig10016:4970..5046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10016 4971..5046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10016.34.1prot_Ecto-sp13_S_contig10016.34.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10016 3971..5046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10016.34.1

>prot_Ecto-sp13_S_contig10016.34.1 ID=prot_Ecto-sp13_S_contig10016.34.1|Name=mRNA_Ecto-sp13_S_contig10016.34.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
TTGQAARAAKALATLNVRKGQRRRGEPRVELPCGRRRRPPPSAKRCSLRK
GQLLWKHAGFDAYISTPAAACLRRC*
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mRNA from alignment at Ecto-sp13_S_contig10016:3955..5046-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10016.34.1 ID=mRNA_Ecto-sp13_S_contig10016.34.1|Name=mRNA_Ecto-sp13_S_contig10016.34.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10016:3955..5046- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACGGGTCAAGCAGCAAGGGCTGCGAAGGCGTTGGCGACCCTGAACGT
CAGGAAGGGGCAGAGAAGGAGAGGAGGTGCGAGGTTTCTTGGTATTTTGT
AGCTGCAAAGCTAGGTTGTGTTGCTCCCCCATGGGATCTGCAGAGCCAAC
GGGAAAACGCCCCCTTCATCCCGCCACACAACAATCTGTTCGTTGCCCGA
CGTTCTGGCTCTCTCTCTTTTCTTTGCCCTCGGACATATGCATGGCCGTG
ACTCTGTGTTGCGTGTCAAGAACCTAGAGTCGAGTTGCCATGCGGGAGGA
GGAGGAGGCCGCCCCCGTCTGCGAAGAGATGTTCATTGCGAAAGGGTCAA
TTGCTGTGGGTGGGTTGCATCAAGGGCACAAATTGTCAAAGGAATCAAAC
ACCTGTACTCCAGCATTTCAAAGCAACGGTTGGTGATGTGCGTTGTTGCT
GCTCTCAAACTATCAAATTGGATCGCTTACTGGCCGGGGCACCCGTGCCC
GAGCGTATGTGCAATATCAAGATGTACACTACATGCCCGCTCTTCTCCAC
CGTCGTCTCCGCGAGTCTACGGCGTGGAGTAGATTATCATTCTGAAGCAG
CAACCAAGGCAGATTTAAAGCCTTGTAGGATCACCAGGTAGGGTGACTGC
TGTGAATCGGCAAACGCCGTCATCAAGATAAAGTTGTGCATGATGATTCC
CCACCCAAATCACCGTACAAGTATGCACACATATTAAAAACTGCATAATC
TGCGCTATTTCGCTATTTTTTATGCTGATACGTAGTATAAATCTCCGCCA
GATTCTCTCCGCTTTTACGGCGAGAAACTCTTCCCCTCCCCCCGCCGCCC
CTTCAAGGCACCCGCTGGTCAACCATTCGGTATACATCTCACCTCATCTC
CTCGTCGTTTTCCCTCATTGCTTGCCTGCCTACGATGCTGACATCAACAT
CCACGCGGCCCATCTTTCCCTCCGCGCCTACTGCTGTCTACACCTCGTGC
CACCAACCTTCAGAAGCACGCAGGGTTTGACGCGTACATATCAACACCGG
CTGCTGCGTGCCTCCGTCGATGCTAACAAATAATTCACCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10016:3955..5046-

>mRNA_Ecto-sp13_S_contig10016.34.1 ID=mRNA_Ecto-sp13_S_contig10016.34.1|Name=mRNA_Ecto-sp13_S_contig10016.34.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10016:3955..5046- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACGGGTCAAGCAGCAAGGGCTGCGAAGGCGTTGGCGACCCTGAACGT
CAGGAAGGGGCAGAGAAGGAGAGGAGAACCTAGAGTCGAGTTGCCATGCG
GGAGGAGGAGGAGGCCGCCCCCGTCTGCGAAGAGATGTTCATTGCGAAAG
GGTCAATTGCTGTGGAAGCACGCAGGGTTTGACGCGTACATATCAACACC
GGCTGCTGCGTGCCTCCGTCGATGCTAA
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