mRNA_Ecto-sp13_S_contig14237.3287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14237.3287.1
Unique NamemRNA_Ecto-sp13_S_contig14237.3287.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: D8LIA4_ECTSI (Kinesin-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA4_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 3.920e-95
Identity = 178/235 (75.74%), Postives = 185/235 (78.72%), Query Frame = 1
Query:   19 SVSMYDVEDTLSQHFFYDANVIKISSFHHVAQKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQE-----------EAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            +V  Y VE T     + DA  + + S     +KRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVH SKRDELERVIQDLQHQ+    L    G         XXXXX             EAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGN+TLKIVELEVQRAQHR
Sbjct:   33 AVVTYVVETT-----YLDAFGVAVDS----EKKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHVSKRDELERVIQDLQHQLIRDDLRASTGXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNITLKIVELEVQRAQHR 258          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A836C6Y4_9STRA (Kinesin-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y4_9STRA)

HSP 1 Score: 235 bits (600), Expect = 3.440e-69
Identity = 123/198 (62.12%), Postives = 158/198 (79.80%), Query Frame = 1
Query:  112 QKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGK-----NXXXXXQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            +K+E+K++KL K+LKPS++V K+A +VMKKCKY+H SK+++LE+ IQ+LQH V  R  IR +   EG   +     +     +E+  M  LE+Y+ELLYEGKDKDDM +K +GTA IL LC HVGNLE L+QD TLMGALTRVL+EEYKKSV LCYNI+RAFLAFSNF+EMHPIL+ YRVG++T+KI+ELEV+RAQHR
Sbjct:   51 KKKEKKKVKLGKHLKPSSNVPKVAAEVMKKCKYIHESKKEDLEKAIQELQH-VMIRDEIRAKTKAEGDWWRVDEDTSRQQEQEEKPDMSRLEEYIELLYEGKDKDDMIQKTRGTANILALCSHVGNLEALVQDQTLMGALTRVLNEEYKKSVALCYNIMRAFLAFSNFVEMHPILANYRVGSITMKILELEVKRAQHR 247          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A7S1U8D3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8D3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.360e-47
Identity = 96/187 (51.34%), Postives = 139/187 (74.33%), Query Frame = 1
Query:  145 KNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGE-----EGRGGKNXXXXXQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            K LKP+++ +++A DV++KCKY+   ++  +E+++  LQ ++++     +  GE     E +G     XXX  EA+M+ +E Y+ELLYEG++  DMT+KI GTA++L LC +VGNLE LIQ++T+MGAL+RVLS+E+KKS++LCYNI+R FLAFSNF EMHPIL+ YRVG   LKI+ELE +R  HR
Sbjct:   67 KTLKPTSNTARMAEDVVRKCKYIAPQEQPLVEQLLAQLQERIASGGAGAESKGEDWKDEEDKGRVRVRXXXXXEARMEEVETYLELLYEGQE--DMTEKIHGTAMLLKLCYNVGNLEVLIQNNTIMGALSRVLSDEFKKSMDLCYNIVRIFLAFSNFAEMHPILANYRVGVAMLKILELEAKRIGHR 251          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: F0XZK9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK9_AURAN)

HSP 1 Score: 166 bits (421), Expect = 6.560e-44
Identity = 91/185 (49.19%), Postives = 132/185 (71.35%), Query Frame = 1
Query:  145 KNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQEE---AQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            K L   +D +K+A DV++KCKY+ +SKR  +E ++ +LQ  V+      K    +      XXXXX  +   A MDS+++Y+E+LYEG +  DM +K++GT  IL LC  VGNLEHL+Q HTLMGAL+RVL+E+Y++S +L YNI+R FL+FSNF+EMH IL+ YRVG++ +++VE EV+R +HR
Sbjct:   50 KTLNERSDPAKIADDVLRKCKYIPSSKRRVVEMLVANLQEHVAGDPDAAKNAAAQRXXXXXXXXXXXRDDVVADMDSVDEYIEMLYEGNE--DMKEKVRGTEKILKLCSFVGNLEHLVQHHTLMGALSRVLAEDYRRSSDLAYNIVRVFLSFSNFVEMHAILAQYRVGSICVELVEFEVKRTEHR 232          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A8J2SG69_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SG69_9STRA)

HSP 1 Score: 160 bits (406), Expect = 7.770e-42
Identity = 85/181 (46.96%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  145 KNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQH 687
            K L   +D  K+A DVM+KCKY+ +SKR  +E ++ +LQ  ++     R+   +     +       E A +D ++DYVELLYEG    D+  KIKGT+L+L LC  VG+LEHL+Q  TLMGAL RVL E+ KKS E+ YN+LR FL+FSNF+EMH +L+ +RVG+V L++V  E  R  H
Sbjct:   56 KTLDERSDPEKIADDVMRKCKYIPSSKRRVVEMLVANLQDHLARNDDARQNAQDARERRRRKETNTSERASIDDVDDYVELLYEG----DIDTKIKGTSLVLSLCGRVGDLEHLVQHQTLMGALARVLQEDGKKSTEVAYNVLRVFLSFSNFVEMHQLLAQHRVGSVCLEVVAFETDRITH 232          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A7S2SW89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW89_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.330e-33
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  157 PSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQE--EAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            P+ DV  +A  V+ KCK + +SK   +E  + +LQ ++     +  +GG  G G  +         EA M+ L+DY+E++Y+  +  D + KI+GT L++ LC +VGNLE LIQ+H+LM  LTR+L  E+KKS+E+ YNI+R FL+FS F  MH +L+ Y+VG++TLK++  E  RA+ R
Sbjct:   53 PAADVEAVADQVVDKCKQIPSSKVGAVEAALIELQRRLLRERAM--DGGGRGYGAASDRELSAALPEANMNDLDDYMEMMYDTDE--DYSNKIRGTGLVVKLCKNVGNLELLIQNHSLMALLTRLLDTEHKKSLEMVYNIIRIFLSFSTFEVMHDLLTQYKVGSLTLKVLTYETDRAEQR 228          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A7S2HNH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HNH1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.730e-33
Identity = 76/210 (36.19%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   64 FYDANVIKISSFHHVAQKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQE-EAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQRAQHR 690
            FYD  V        V + R   R++L K L  S+D+  +A  ++  CKY+ AS++  +E+ +  LQ +   +  +  E  +  +GG        + EA +D L++Y+E++YE     DMT+K++GTA+IL LC +VGNLE ++ +  +M  L R+  +E++KS+E+CYNI+R +L+ SNF+EMHP+L+++ +G ++L I++ E  R QH+
Sbjct:   26 FYDKEVTYDDD--RVDRTRHSTRVRL-KALDISSDIPSMAASIVNNCKYLTASRQKYVEQALVKLQRRNLQQAQLSDEREKYDQGGMGEAPGGMDGEASVDKLDEYLEMMYETGP--DMTEKVRGTAMILQLCFNVGNLEVIVGNQAIMSLLGRLFKDEFRKSMEMCYNIMRIYLSLSNFLEMHPVLASHNIGRLSLIIMDYENTRIQHQ 230          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A3Q1HBD2_ANATE (Kinesin-associated protein 3-like n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HBD2_ANATE)

HSP 1 Score: 130 bits (326), Expect = 5.510e-31
Identity = 78/224 (34.82%), Postives = 137/224 (61.16%), Query Frame = 1
Query:    7 LTALSVSMYDVEDTLSQHFFYDANVIKISSFHHVAQKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQR 678
            +TA S+ ++  E  L  H+  +A+++  S  H V +++E ++I   K+L PSTDV+ LA  V+++CK +  S+  ++E+++  LQ++ S+  + + E  +             EEA +  +++YVELLYEG     + +KI+G+ALIL L  +  NLE L+ +   +GAL RVL E++K+SVEL   I+  F  FS+F + H ++S Y++G + + +VE E++R
Sbjct:    4 VTAGSLDVHPTEKALVVHYEVEASILGESGGHMVGERKEGQKIVRVKSLSPSTDVAALAKKVVEECKLIPPSRLPQVEQLLYYLQNRKSSPVVGKGESSKPRELTPFEGFELNEEASITRVDEYVELLYEG-----IPEKIRGSALILQLARNPDNLEELLHNEAALGALARVLREDWKQSVELATIIIYIFFCFSSFSQFHGVVSHYKIGALCMSVVEHELKR 222          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A482RY74_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY74_9ARCH)

HSP 1 Score: 126 bits (317), Expect = 6.750e-31
Identity = 81/216 (37.50%), Postives = 128/216 (59.26%), Query Frame = 1
Query:  112 QKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQ------------------HQVSTRTLIRKEGGEEGRGGKNXXXXXQEE---AQMDSLEDYVELLYE--GKDKDDMTKKI----KGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQR 678
            +K E +RIK+ K+L    ++++LA D++ KCKY+H S+ +E+E ++  L+                  HQ    +    +G       ++     +     A M+ L+DY+ELLY+  GK + +  + +    KGT LIL LC  V NLE LIQ+ T+MGA+TRV  EEYK+S++L +NILR FLAFSNF+EMH +++ Y++G +T++ V+ E  R
Sbjct:   15 RKPEVRRIKI-KSLSADKNMAQLANDIIDKCKYIHPSRAEEIETLLIHLRRTKLAQSDSGTTPSNHCMHQPQHNSGSSYQGAAAPSSDRHREKDKESRLPSASMNQLDDYLELLYQVSGKTEKEREEGLRMQEKGTLLILRLCRDVMNLEQLIQNGTVMGAVTRVFQEEYKRSLDLSFNILRIFLAFSNFVEMHALMAQYKIGVLTMRWVDFEALR 229          
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Match: A0A4U5UYW6_COLLU (Kinesin-associated protein 3 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UYW6_COLLU)

HSP 1 Score: 123 bits (308), Expect = 9.200e-31
Identity = 78/231 (33.77%), Postives = 138/231 (59.74%), Query Frame = 1
Query:    1 RFLTALSVSMYDVEDTLSQHFFYDANVIKISSFHHVAQKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKNXXXXXQ-----EEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILSTYRVGNVTLKIVELEVQR 678
            R +TA S+ ++  E  L  H+  +A ++     H + +++E ++I   K+L PSTDV  LA  VM++CK + AS+  ++E+++  LQ++ S+    + E  E+           +     EEA +  +++Y+ELLYEG     + +KI+G+ALIL L  +  NLE L+ +  ++GAL RVL E++K+SV+L   I+  F  FS+F + H ++S Y++G + + +VE E++R
Sbjct:   10 RKVTAGSLDVHPTEKALVVHYEVEATILGEGGGHMLGERKEGQKIIRVKSLSPSTDVGALAKKVMEECKLIPASRLPQVEQLLYYLQNRKSSPVEGKLEKKEKRSVKPRELTPFEGMEINEEACITRVDEYIELLYEG-----IPEKIRGSALILQLARNPDNLEELLHNEAVLGALARVLREDWKQSVDLATIIIYIFFCFSSFSQFHGVVSHYKIGALCMSVVEHELKR 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14237.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA4_ECTSI3.920e-9575.74Kinesin-associated protein n=1 Tax=Ectocarpus sili... [more]
A0A836C6Y4_9STRA3.440e-6962.12Kinesin-associated protein n=1 Tax=Tribonema minus... [more]
A0A7S1U8D3_9STRA6.360e-4751.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0XZK9_AURAN6.560e-4449.19Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SG69_9STRA7.770e-4246.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2SW89_9STRA2.330e-3341.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2HNH1_9STRA2.730e-3336.19Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A3Q1HBD2_ANATE5.510e-3134.82Kinesin-associated protein 3-like n=2 Tax=Anabas t... [more]
A0A482RY74_9ARCH6.750e-3137.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A4U5UYW6_COLLU9.200e-3133.77Kinesin-associated protein 3 n=1 Tax=Collichthys l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14237contigEcto-sp13_S_contig14237:1925..4114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score305.8
Seed ortholog evalue1.6e-80
Seed eggNOG ortholog2880.D8LIA4
Preferred nameKIFAP3
Model size693
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
Exons5
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGsKOG1222@1,KOG1222@2759
Ec32 ortholog descriptionKinesin-associated protein
Ec32 orthologEc-24_001410.1
Cds size666
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14237.3287.1prot_Ecto-sp13_S_contig14237.3287.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14237 1925..4087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.8845553-CDS-Ecto-sp13_S_contig14237:1924..20321681462760.8845553-CDS-Ecto-sp13_S_contig14237:1924..2032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14237 1925..2032 -
1681462760.898644-CDS-Ecto-sp13_S_contig14237:2496..25891681462760.898644-CDS-Ecto-sp13_S_contig14237:2496..2589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14237 2497..2589 -
1681462760.907851-CDS-Ecto-sp13_S_contig14237:2913..29971681462760.907851-CDS-Ecto-sp13_S_contig14237:2913..2997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14237 2914..2997 -
1681462760.91862-CDS-Ecto-sp13_S_contig14237:3468..35801681462760.91862-CDS-Ecto-sp13_S_contig14237:3468..3580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14237 3469..3580 -
1681462760.928583-CDS-Ecto-sp13_S_contig14237:3818..40871681462760.928583-CDS-Ecto-sp13_S_contig14237:3818..4087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14237 3819..4087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.9383554-UTR-Ecto-sp13_S_contig14237:4087..41141681462760.9383554-UTR-Ecto-sp13_S_contig14237:4087..4114Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14237 4088..4114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14237.3287.1

>prot_Ecto-sp13_S_contig14237.3287.1 ID=prot_Ecto-sp13_S_contig14237.3287.1|Name=mRNA_Ecto-sp13_S_contig14237.3287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MYDVEDTLSQHFFYDANVIKISSFHHVAQKRERKRIKLRKNLKPSTDVSK
LAGDVMKKCKYVHASKRDELERVIQDLQHQVSTRTLIRKEGGEEGRGGKN
GGEEEQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNL
EHLIQDHTLMGALTRVLSEEYKKSVELCYNILRAFLAFSNFMEMHPILST
YRVGNVTLKIVELEVQRAQHR*
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mRNA from alignment at Ecto-sp13_S_contig14237:1925..4114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14237.3287.1 ID=mRNA_Ecto-sp13_S_contig14237.3287.1|Name=mRNA_Ecto-sp13_S_contig14237.3287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14237:1925..4114- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATTCTTGACCGCCCTTTCTGTCTCCATGTACGACGTTGAAGATACGCT TTCCCAACACTTTTTCTATGACGCCAACGTCATAAAAATCTCGTCTTTCC ACCATGTCGCGCAGAAGCGAGAGCGGAAGCGCATTAAGCTCCGCAAAAAC CTTAAGCCATCAACGGACGTGTCCAAGCTGGCCGGAGATGTGATGAAGAA GTGCAAATACGTGCACGCCTCCAAGCGCGATGAACTGGAGAGGGTCATAC AAGACTTGCAGCACCAAGTAAGTACAAGGACCTTGATTAGAAAGGAGTAA TAAACAAATGGTGGCCAGAAGAGGCAGCGCACAAAACGTCACAGTCAAAA TCTACCTATGTTTATGCAACTTGTGTACTTGCTCCGCTCTCTCTGGTTGA TGTCGCATTCTGTAATGTGGTTACTCGTCCTTTGACTTGATCTGGCTATT TTTCTGCGACGTGGTTGTGCAGCTTATCCGAGATGACCTGCGAGCTAGCA CAGGGGGGGGAGGGGATGGAGGTGACTGGTGGAGAGGTGGCGAAGAAGGG CGAGGGGGTAAAAACGGAGGGGAAGAGGAACAGGAAGAAGCCCAAATGGA CAGTCTTGAGGATTACGTCGAGCTCCTGTACGAAGGAAAGGACAAGGTGC GCAAGGGTGGATATCATAAGTAGTGGTTGTGCTCCAGTGTGGCCGCGTTT GAGCTGATGTTCAAGTATGGCCGCGAGGGAGTAGCCTAATCGTCAGTACC AGCCGGCAGAATGTAGATGGTGTGAGCTCAGTTAACATGGACAATCCGGA GGGTTCCTTTGCACGGTTTTGCTGTCCGACAGAATCACAACGTGCCATTC GAATGAGTGATACTCTGCAGCGTGTTCAGTCCGTAAGAGGCGAACCTGTC CTGAATCCCTGATCGCTTAGCGGCCATGCGCTGCTCTTCCCTTCGTTGGA GCACCCGTCTGCTTATGGCCCATCTCACTAAACAATGCGAGTGCAATGTA TCCAACAAGCTCTTTGAGAAATCGACGACACGACTTGGGTAGGTCCATCC CGAATCGTTTGGCAACGCCGTTGCATTAATTCTCTCTCGGGATGGATTCT TGCCCTGCCGTATGCAGGATGACATGACGAAGAAGATCAAGGGAACAGCT CTAATCCTGGACCTGTGTTGCCACGTGGGAAACCTAGAACATCTCATCCA GGTATCCATTGCTCACGTTTGCATTTCCATTAGATCGATTCTGCTCCGAT ATCAGGTGCACGTTTCACAGCTTCTTCGTGAGTGCGCGTGTCTGCGTGCT ACGCGTCATTCAATGATGGAGGGCACCGCCCTCGTGCTGGGAGAACCAAC AACCAGTTTTCTCTAGCCGACACAGCGTCCGTATTTGGGTGGGATCGACT CGTGCTTCGCGGTGGGGATCTATATTTTTTGGCATGTGTACGAAGGCACG AAGCGCCCCGTGAACTCGGTCCGTCCAAACACGGAAACTTATCCATCTCC ACCTGTTTGGCGTCCGAGCCCATAGGACCACACCCTCATGGGGGCACTGA CGCGAGTCTTGAGCGAGGAGTACAAGAAAAGCGTTGAGCTCTGCTACAAC ATATTACGGGCCTTCTTGGTGAGGGAGCACGAAGGGAACAAGGGTGTGGC AAACGCGCTTCTTTTTGGGATCTGTTTCTGCTCATGAGTTGGTTTCTCGG GGACATCGTCTCTCTGTGCAAACACGCTGGTTGTAAGTGACTACACCCGT TAGACGTCGAGATGTCGGGCGGGTGGCGCGGAGTTTAGGAGATGTTTCGG GTGTTACCGACCAGTGGGAGATTTTCTTGTATTTTCGTCCAAGCTAGCCC CTTGTGGTATGTACTTGACGTACCAAACGTCTTCCCACAGAATCGACGCC ATTATGTAGTGCGGCACGCATGTGCGAAAAACTGCAGTTGCTTCAAGGAT CAAATCTCCGAGAAAAAAGTTTTGTGGCGTTCCGATCGTCCACACGGTAT ACCATACATATCACGCTACCGCTGAAATATCGAGTACATACGCGATTTGT ATGTCTTCGACGGGGAATCTCTTCATCGGCAGGCGTTCTCCAACTTCATG GAGATGCACCCCATACTATCCACGTACCGCGTGGGCAACGTCACCCTCAA GATAGTCGAGCTGGAGGTGCAAAGGGCGCAGCACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14237:1925..4114-

>mRNA_Ecto-sp13_S_contig14237.3287.1 ID=mRNA_Ecto-sp13_S_contig14237.3287.1|Name=mRNA_Ecto-sp13_S_contig14237.3287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14237:1925..4114- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGACGTTGAAGATACGCTTTCCCAACACTTTTTCTATGACGCCAA
CGTCATAAAAATCTCGTCTTTCCACCATGTCGCGCAGAAGCGAGAGCGGA
AGCGCATTAAGCTCCGCAAAAACCTTAAGCCATCAACGGACGTGTCCAAG
CTGGCCGGAGATGTGATGAAGAAGTGCAAATACGTGCACGCCTCCAAGCG
CGATGAACTGGAGAGGGTCATACAAGACTTGCAGCACCAAGTAAGTACAA
GGACCTTGATTAGAAAGGAAGGTGGCGAAGAAGGGCGAGGGGGTAAAAAC
GGAGGGGAAGAGGAACAGGAAGAAGCCCAAATGGACAGTCTTGAGGATTA
CGTCGAGCTCCTGTACGAAGGAAAGGACAAGGATGACATGACGAAGAAGA
TCAAGGGAACAGCTCTAATCCTGGACCTGTGTTGCCACGTGGGAAACCTA
GAACATCTCATCCAGGACCACACCCTCATGGGGGCACTGACGCGAGTCTT
GAGCGAGGAGTACAAGAAAAGCGTTGAGCTCTGCTACAACATATTACGGG
CCTTCTTGGCGTTCTCCAACTTCATGGAGATGCACCCCATACTATCCACG
TACCGCGTGGGCAACGTCACCCTCAAGATAGTCGAGCTGGAGGTGCAAAG
GGCGCAGCACAGGTGA
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