mRNA_Ecto-sp13_S_contig14236.3286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14236.3286.1
Unique NamemRNA_Ecto-sp13_S_contig14236.3286.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.710e-26
Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:    6 LEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            LEGIDH+GE+CC LGCGQCGG GC  SGASNGLGAESCC  EV DSGRYCDD  EAPCII
Sbjct:  746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.440e-26
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            GLEGIDH+GE+CC L CGQCGG GC  SGASNGLGA+SCC  E++DSGR+CDDT EAPCII
Sbjct:  546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.360e-20
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    1 MALRASTTEARSVVRLGAASAEVQDATSLALRTVLALSLAAHPRCTIAADTVTTLTRPRVSL 186
            MA RASTTEARSVVR G ASAEVQDAT LALRTVLALSLAAH RCTIAADTVTT TRPRVSL
Sbjct:  430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.280e-18
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            GLEGID  G +CC LGCGQCGG GC+ SGA+ GL   SCC   +  SG+YCD+T +APCII
Sbjct:  273 GLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCII 333          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.140e-18
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            G+EGIDH+GE+CC L CGQCGG GC  +G++NGL   SCC  EV     YC+DT  APCII
Sbjct:  686 GIEGIDHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 9.030e-18
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCI 182
            G+EGID R  +CC L CGQCGG GC  SGA+ GLGA+SCC   V  SG+YCDDT EAPCI
Sbjct:  320 GIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.670e-17
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            G++GID  G +CC + C QCGG GC  +G + GLGAESCC   V  SGRYCDDT EAPCII
Sbjct:  530 GVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCII 590          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.260e-16
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
            G+EGIDH+GE+CC L CGQCGG GC  +G++  L  ESCC  +V     YC+DT  APCII
Sbjct:  663 GIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.290e-8
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 3
Query:    3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCI 182
            GL G+  +GE CC+LGCG CGG GC  S  + GL  + CC   +  +G  C D+  APCI
Sbjct:   28 GLAGVS-KGEYCCTLGCGTCGGSGC--SSRAEGLTGDDCCTSNIASNGILCADSGAAPCI 84          
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.280e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 3
Query:    6 LEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCC 122
            LE IDH+GEICC LGCG CG  GC  + A+NGLG  SCC
Sbjct:  145 LECIDHKGEICCPLGCGPCGESGCGITSATNGLG-RSCC 182          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JYT7_9PHAE1.710e-2681.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIS5_ECTSI7.440e-2677.05FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FN07_ECTSI1.360e-2090.32FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JC43_9PHAE2.280e-1862.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI4.140e-1860.66Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D7FN04_ECTSI9.030e-1866.67FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FUJ9_ECTSI2.670e-1762.30Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A6H5JUS5_9PHAE3.260e-1657.38MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5K646_9PHAE8.290e-846.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M2_9PHAE3.280e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14236contigEcto-sp13_S_contig14236:1861..2049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002620.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.8563921-CDS-Ecto-sp13_S_contig14236:1860..20491681462760.8563921-CDS-Ecto-sp13_S_contig14236:1860..2049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14236 1861..2049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14236.3286.1prot_Ecto-sp13_S_contig14236.3286.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14236 1861..2049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14236.3286.1

>prot_Ecto-sp13_S_contig14236.3286.1 ID=prot_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MALRASTTEARSVVRLGAASAEVQDATSLALRTVLALSLAAHPRCTIAAD
TVTTLTRPRVSL*
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mRNA from alignment at Ecto-sp13_S_contig14236:1861..2049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14236.3286.1 ID=mRNA_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14236:1861..2049+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTTGGG TGCGGCCAGTGCGGAGGTCCAGGATGCGACGAGTCTGGCGCTTCGAACGG TCTTGGCGCTGAGTCTTGCTGCCCACCCGAGGTGCACGATAGCGGCAGAT ACTGTGACGACACTTACGAGGCCCCGTGTATCATTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14236:1861..2049+

>mRNA_Ecto-sp13_S_contig14236.3286.1 ID=mRNA_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14236:1861..2049+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTTGGG
TGCGGCCAGTGCGGAGGTCCAGGATGCGACGAGTCTGGCGCTTCGAACGG
TCTTGGCGCTGAGTCTTGCTGCCCACCCGAGGTGCACGATAGCGGCAGAT
ACTGTGACGACACTTACGAGGCCCCGTGTATCATTATAG
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