mRNA_Ecto-sp13_S_contig14236.3286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.710e-26 Identity = 49/60 (81.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query: 6 LEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
LEGIDH+GE+CC LGCGQCGG GC SGASNGLGAESCC EV DSGRYCDD EAPCII
Sbjct: 746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 107 bits (268), Expect = 7.440e-26 Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
GLEGIDH+GE+CC L CGQCGG GC SGASNGLGA+SCC E++DSGR+CDDT EAPCII
Sbjct: 546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 1.360e-20 Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 1
Query: 1 MALRASTTEARSVVRLGAASAEVQDATSLALRTVLALSLAAHPRCTIAADTVTTLTRPRVSL 186
MA RASTTEARSVVR G ASAEVQDAT LALRTVLALSLAAH RCTIAADTVTT TRPRVSL
Sbjct: 430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.280e-18 Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
GLEGID G +CC LGCGQCGG GC+ SGA+ GL SCC + SG+YCD+T +APCII
Sbjct: 273 GLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASGKYCDETNDAPCII 333
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 4.140e-18 Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
G+EGIDH+GE+CC L CGQCGG GC +G++NGL SCC EV YC+DT APCII
Sbjct: 686 GIEGIDHKGEVCCPLACGQCGGSGCGSAGSANGLDGASCCSSEVLAGNVYCEDTNAAPCII 746
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 9.030e-18 Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCI 182
G+EGID R +CC L CGQCGG GC SGA+ GLGA+SCC V SG+YCDDT EAPCI
Sbjct: 320 GIEGIDGR-VVCCPLECGQCGGTGCSTSGAAYGLGADSCCREPVSSSGKYCDDTGEAPCI 378
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.670e-17 Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
G++GID G +CC + C QCGG GC +G + GLGAESCC V SGRYCDDT EAPCII
Sbjct: 530 GVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASGRYCDDTDEAPCII 590
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.260e-16 Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCII 185
G+EGIDH+GE+CC L CGQCGG GC +G++ L ESCC +V YC+DT APCII
Sbjct: 663 GIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 8.290e-8 Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 3
Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCCPPEVHDSGRYCDDTYEAPCI 182
GL G+ +GE CC+LGCG CGG GC S + GL + CC + +G C D+ APCI
Sbjct: 28 GLAGVS-KGEYCCTLGCGTCGGSGC--SSRAEGLTGDDCCTSNIASNGILCADSGAAPCI 84
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.280e-7 Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 3
Query: 6 LEGIDHRGEICCSLGCGQCGGPGCDESGASNGLGAESCC 122
LE IDH+GEICC LGCG CG GC + A+NGLG SCC
Sbjct: 145 LECIDHKGEICCPLGCGPCGESGCGITSATNGLG-RSCC 182 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14236.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14236.3286.1 >prot_Ecto-sp13_S_contig14236.3286.1 ID=prot_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp MALRASTTEARSVVRLGAASAEVQDATSLALRTVLALSLAAHPRCTIAADback to top mRNA from alignment at Ecto-sp13_S_contig14236:1861..2049+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14236.3286.1 ID=mRNA_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14236:1861..2049+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14236:1861..2049+ >mRNA_Ecto-sp13_S_contig14236.3286.1 ID=mRNA_Ecto-sp13_S_contig14236.3286.1|Name=mRNA_Ecto-sp13_S_contig14236.3286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14236:1861..2049+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |