mRNA_Ecto-sp13_S_contig14215.3274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14215.3274.1
Unique NamemRNA_Ecto-sp13_S_contig14215.3274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A6H5JV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV72_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.100e-44
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            KVYEKDA+SLTWRPPPNTDGTPNESVDDVFVRVRQ LLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH
Sbjct:  109 KVYEKDAVSLTWRPPPNTDGTPNESVDDVFVRVRQ-LLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 182          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: UPI000D1C4CAB (uncharacterized protein LOC9662274 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4CAB)

HSP 1 Score: 97.8 bits (242), Expect = 6.100e-23
Identity = 48/75 (64.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            +VYE D +SL  RPPPNT+GTPNESV DVFVRV Q L+S LETQY G+ ++IV+PDSD LSVLQ+ + G D+ +H
Sbjct:  196 EVYETDVVSLQSRPPPNTNGTPNESVADVFVRVTQ-LMSILETQYAGDSIVIVSPDSDNLSVLQAGLYGLDLRRH 269          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: R7QBG4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBG4_CHOCR)

HSP 1 Score: 97.4 bits (241), Expect = 1.150e-22
Identity = 44/74 (59.46%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    4 VYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            + E D +  +WRP P  DGTPN+S DDVFVRVRQ LLSKLETQY GE+++I++PDSD LSVLQ+ ++G+++ +H
Sbjct:  195 IIENDGLDSSWRPVPGEDGTPNDSSDDVFVRVRQ-LLSKLETQYFGENIVILSPDSDPLSVLQTVLMGQELTEH 267          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: D8T004_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T004_SELML)

HSP 1 Score: 94.7 bits (234), Expect = 1.230e-22
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDM 216
            +VYE D +SL  RPPPNT+GTPNESV DVFVRV Q L+S LETQY G+ ++IV+PDSD LSVLQ+ + G D+
Sbjct:  124 EVYETDVVSLQSRPPPNTNGTPNESVADVFVRVTQ-LMSILETQYAGDSIVIVSPDSDNLSVLQAGLYGLDL 194          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A2P5CJB6_PARAD (Histidine phosphatase n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CJB6_PARAD)

HSP 1 Score: 97.1 bits (240), Expect = 1.420e-22
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            +VYE D+IS+T +PPP  DGTPNESV DVFVRV Q L+S LETQY G+ VIIV+PDSD L++LQ+ ++G D+ +H
Sbjct:  200 EVYESDSISITTKPPPINDGTPNESVKDVFVRVTQ-LMSILETQYSGDTVIIVSPDSDNLTILQAGLIGLDLRRH 273          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A7S4LBC9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LBC9_9EUGL)

HSP 1 Score: 94.4 bits (233), Expect = 1.660e-22
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDM 216
            +VY  D I  + RPPP TDGTPNESV+DVFVRV  QLLSKLETQYQG  VIIV+PDSD L+VLQ+ + G DM
Sbjct:   92 EVYAADQIDTSIRPPPFTDGTPNESVNDVFVRV-VQLLSKLETQYQGVTVIIVSPDSDNLTVLQAAMTGLDM 162          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: UPI0011DFE855 (uncharacterized protein LOC115708766 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DFE855)

HSP 1 Score: 95.5 bits (236), Expect = 4.900e-22
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            +VYE D IS T +PPP  DGTPNESV DVFVRV Q L+S LETQY GE VIIV+PDSD L++LQ+ ++G D+ +H
Sbjct:  193 EVYESDGISPTIKPPPINDGTPNESVKDVFVRVTQ-LMSILETQYSGETVIIVSPDSDNLTILQAGLIGLDLRRH 266          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A5K0WAR2_9MAGN (Uncharacterized protein (Fragment) n=5 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WAR2_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 6.160e-22
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 VYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDM 216
            VY+ D IS + +PPP  DGTPNESV+DVFVRV Q L+S LETQY G+ ++IV+PDSD LSVLQ+ ++G D+
Sbjct:    1 VYDSDRISPSTKPPPIDDGTPNESVEDVFVRVTQ-LMSILETQYAGDSIVIVSPDSDNLSVLQAGLVGLDL 70          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A2N9H0P2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H0P2_FAGSY)

HSP 1 Score: 90.5 bits (223), Expect = 6.990e-22
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            +VY  D+IS T +PPP  DGTPNESV DVFVRV Q L+S LETQY G+ VIIV+PDSD L++LQ+ ++G ++ +H
Sbjct:    3 QVYASDSISTTIKPPPIDDGTPNESVADVFVRVTQ-LMSILETQYSGDTVIIVSPDSDNLTILQAGLVGLELRRH 76          
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Match: A0A1Y1ILS9_KLENI (Histidine phosphatase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILS9_KLENI)

HSP 1 Score: 94.4 bits (233), Expect = 9.710e-22
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDVIIVAPDSDCLSVLQSFVLGEDMGKH 225
            +VYE D  S  +RPP   DGTPNESV+DV VRVRQ L+S LETQYQG+ V+IV+PDSD LSVLQ+ +LG D+ +H
Sbjct:  168 EVYESDRESAFYRPPAFVDGTPNESVNDVLVRVRQ-LMSILETQYQGDQVVIVSPDSDNLSVLQAALLGLDLRQH 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14215.3274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV72_9PHAE4.100e-4497.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000D1C4CAB6.100e-2364.00uncharacterized protein LOC9662274 n=2 Tax=Selagin... [more]
R7QBG4_CHOCR1.150e-2259.46Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
D8T004_SELML1.230e-2265.28Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A2P5CJB6_PARAD1.420e-2262.67Histidine phosphatase n=2 Tax=Cannabaceae TaxID=34... [more]
A0A7S4LBC9_9EUGL1.660e-2269.44Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI0011DFE8554.900e-2264.00uncharacterized protein LOC115708766 n=1 Tax=Canna... [more]
A0A5K0WAR2_9MAGN6.160e-2261.97Uncharacterized protein (Fragment) n=5 Tax=Nymphae... [more]
A0A2N9H0P2_FAGSY6.990e-2260.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1Y1ILS9_KLENI9.710e-2264.00Histidine phosphatase n=1 Tax=Klebsormidium nitens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14215contigEcto-sp13_S_contig14215:360..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score96.7
Seed ortholog evalue5e-18
Seed eggNOG ortholog88036.EFJ23681
Model size225
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphoglycerate mutase family protein
EggNOG OGs28IES@1,2QQRI@2759,37SP3@33090,3GFKT@35493
Cds size225
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.0369043-CDS-Ecto-sp13_S_contig14215:359..4641681462760.0369043-CDS-Ecto-sp13_S_contig14215:359..464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14215 360..464 +
1681462760.046779-CDS-Ecto-sp13_S_contig14215:926..10461681462760.046779-CDS-Ecto-sp13_S_contig14215:926..1046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14215 927..1046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14215.3274.1prot_Ecto-sp13_S_contig14215.3274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14215 360..1046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14215.3274.1

>prot_Ecto-sp13_S_contig14215.3274.1 ID=prot_Ecto-sp13_S_contig14215.3274.1|Name=mRNA_Ecto-sp13_S_contig14215.3274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
KVYEKDAISLTWRPPPNTDGTPNESVDDVFVRVRQQLLSKLETQYQGEDV
IIVAPDSDCLSVLQSFVLGEDMGKH
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mRNA from alignment at Ecto-sp13_S_contig14215:360..1046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14215.3274.1 ID=mRNA_Ecto-sp13_S_contig14215.3274.1|Name=mRNA_Ecto-sp13_S_contig14215.3274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14215:360..1046+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTACGAGAAGGATGCGATCAGCCTGACTTGGCGCCCTCCTCCCAA CACCGACGGGACTCCGAACGAGAGCGTGGACGACGTTTTTGTGCGCGTTC GACAGGTACCTGCGGCTACTGTTGAAATCATAAGCGATGATGCTGGGTGG TGTTCGTAGGCATGATTGGCTTTTGTTCGTGCCTTTGGTGGGGGACTCAC TTTTTTGTCGCCGTGGATTTTCGGCGCCATCCCTCCCCGCCGCTACTTTG TGACTCCTGCCCCTCTCTCTGGCTCTTCACTGGCTTTCAATCCTGATTGC TGCTGCCGCCGCCGCTCACGAACGCCATCGCCTGGCTCGCCCCGTTACAT TTGCATCTGTTGCTGTTGCTGTTCCATCCGCGAAGCTCCACTGTCTCACC TCCCACTTTGCTCGACTTTTTGTTGTCCGCTGCCGCTAATGCTTCCGCGG CCGGTGATGACGCTGTTGCTGCTGCGCCACCGGCGGCGGCATTCGAAAAC AACAACGAAATACTCCACGGCATGGCATCGCTGTGGAAACAACAACGAAC GAAACAATCGCTGGAAGCAGCTACTAAGCAAGCTCGAGACGCAGTACCAA GGGGAAGACGTGATCATCGTAGCCCCCGACTCCGACTGTCTGTCCGTGCT GCAGTCGTTCGTGCTAGGAGAAGACATGGGCAAGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14215:360..1046+

>mRNA_Ecto-sp13_S_contig14215.3274.1 ID=mRNA_Ecto-sp13_S_contig14215.3274.1|Name=mRNA_Ecto-sp13_S_contig14215.3274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14215:360..1046+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTACGAGAAGGATGCGATCAGCCTGACTTGGCGCCCTCCTCCCAA
CACCGACGGGACTCCGAACGAGAGCGTGGACGACGTTTTTGTGCGCGTTC
GACAGCAGCTACTAAGCAAGCTCGAGACGCAGTACCAAGGGGAAGACGTG
ATCATCGTAGCCCCCGACTCCGACTGTCTGTCCGTGCTGCAGTCGTTCGT
GCTAGGAGAAGACATGGGCAAGCAC
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