prot_Ecto-sp13_S_contig1420.3263.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1420.3263.1
Unique Nameprot_Ecto-sp13_S_contig1420.3263.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length288
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 3.830e-150
Identity = 262/289 (90.66%), Postives = 266/289 (92.04%), Query Frame = 0 
Query:    1 MVTQLFRSGSGSDGAPXXXXXSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAA-AAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEXXXXXXXXXXXXXARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENQLSSSDXXXXXXXXXXXXVTMRVLGRHEEGVRAVAISADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGYVYSLCMSPDARTVVRTSRCRLPVLMCLLLFDVWM-LWM 287
            MVTQLFRSGSGSDGAP     SPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAA A A ADQAGGEEADVVSRP RSDLCAAAAGRSERDGEN  XXXXXXXXXXXXX RGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDREN      XXXXXXXXXXXXVTMR+LGRHEEGVRAVAISADGRWAVTGDRKGL+KVWEVPRE PPGADREPSSP GAAEAEFEAHKGYVYSLCMSPDART+ RTSRCRLPVLM LL+FDVWM LWM
Sbjct:    1 MVTQLFRSGSGSDGAPSPSFSSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAPAGAGADQAGGEEADVVSRPVRSDLCAAAAGRSERDGEN--XXXXXXXXXXXXXXRGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENP---PXXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVPRETPPGADREPSSPDGAAEAEFEAHKGYVYSLCMSPDARTLARTSRCRLPVLMRLLVFDVWMMLWM 284
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BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 4.830e-127
Identity = 229/256 (89.45%), Postives = 234/256 (91.41%), Query Frame = 0 
Query:   10 SGSDGAPXXXXXSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEXXXXXXXXXXXXX-ARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENQLSSSDXXXXXXXXXXXXVTMRVLGRHEEGVRAVAISADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGYVYSLCMSPDARTVV 264
            +GSDG P     SPAPVVP VVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSER+GEN  XXXXXXXXXXXXX ARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDREN  SSS XXXXXX      VTMR+LGRHEEGVRAVAISADGRWAVTGDRKG++KVWEVPREAPPGADREP S  GAAEAEFEAHKGYVYSLCMSPDARTVV
Sbjct:  207 AGSDGPPSPSSSSPAPVVPSVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERNGENXXXXXXXXXXXXXXXDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENPPSSSXXXXXXXPP----VTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVPREAPPGADREPLSSDGAAEAEFEAHKGYVYSLCMSPDARTVV 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF89_ECTSI3.830e-15090.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7H8_9PHAE4.830e-12789.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 181..220
e-value: 2.4E-4
score: 30.4
coord: 237..281
e-value: 210.0
score: 2.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 185..219
e-value: 1.3E-4
score: 22.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 188..221
score: 10.809
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 67..271
e-value: 1.3E-16
score: 62.3
NoneNo IPR availablePANTHERPTHR42968FAMILY NOT NAMEDcoord: 54..264
NoneNo IPR availablePANTHERPTHR42968:SF10IP10415Pcoord: 54..264
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 287..287
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 269..286
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 188..229
score: 9.968
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 124..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1420contigEcto-sp13_S_contig1420:4285..5860 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1420.3263.1mRNA_Ecto-sp13_S_contig1420.3263.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1420 4285..5860 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1420.3263.1 ID=prot_Ecto-sp13_S_contig1420.3263.1|Name=mRNA_Ecto-sp13_S_contig1420.3263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MVTQLFRSGSGSDGAPSPSPSSPAPVVPPVVRILACGGTFLPAPAKPMLR
RVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEGE
DEEEDEEEEDDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKG
VRVLHNVLCPDRENQLSSSDEDGAAQAPPPPPVTMRVLGRHEEGVRAVAI
SADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGY
VYSLCMSPDARTVVRTSRCRLPVLMCLLLFDVWMLWM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam