mRNA_Ecto-sp13_S_contig1420.3263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1420.3263.1
Unique NamemRNA_Ecto-sp13_S_contig1420.3263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 3.830e-150
Identity = 262/289 (90.66%), Postives = 266/289 (92.04%), Query Frame = 1 
Query:    1 MVTQLFRSGSGSDGAPXXXXXSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAA-AAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEXXXXXXXXXXXXXARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENQLSSSDXXXXXXXXXXXXVTMRVLGRHEEGVRAVAISADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGYVYSLCMSPDARTVVRTSRCRLPVLMCLLLFDVWM-LWM 861
            MVTQLFRSGSGSDGAP     SPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAA A A ADQAGGEEADVVSRP RSDLCAAAAGRSERDGEN  XXXXXXXXXXXXX RGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDREN      XXXXXXXXXXXXVTMR+LGRHEEGVRAVAISADGRWAVTGDRKGL+KVWEVPRE PPGADREPSSP GAAEAEFEAHKGYVYSLCMSPDART+ RTSRCRLPVLM LL+FDVWM LWM
Sbjct:    1 MVTQLFRSGSGSDGAPSPSFSSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAPAGAGADQAGGEEADVVSRPVRSDLCAAAAGRSERDGEN--XXXXXXXXXXXXXXRGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENP---PXXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVPRETPPGADREPSSPDGAAEAEFEAHKGYVYSLCMSPDARTLARTSRCRLPVLMRLLVFDVWMMLWM 284
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BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 4.830e-127
Identity = 229/256 (89.45%), Postives = 234/256 (91.41%), Query Frame = 1 
Query:   28 SGSDGAPXXXXXSPAPVVPPVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEXXXXXXXXXXXXX-ARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENQLSSSDXXXXXXXXXXXXVTMRVLGRHEEGVRAVAISADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGYVYSLCMSPDARTVV 792
            +GSDG P     SPAPVVP VVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSER+GEN  XXXXXXXXXXXXX ARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDREN  SSS XXXXXX      VTMR+LGRHEEGVRAVAISADGRWAVTGDRKG++KVWEVPREAPPGADREP S  GAAEAEFEAHKGYVYSLCMSPDARTVV
Sbjct:  207 AGSDGPPSPSSSSPAPVVPSVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERNGENXXXXXXXXXXXXXXXDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENPPSSSXXXXXXXPP----VTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVPREAPPGADREPLSSDGAAEAEFEAHKGYVYSLCMSPDARTVV 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1420.3263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF89_ECTSI3.830e-15090.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7H8_9PHAE4.830e-12789.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1420contigEcto-sp13_S_contig1420:4285..5860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size864
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-01_004050.1
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.1937346-CDS-Ecto-sp13_S_contig1420:4284..50731681462759.1937346-CDS-Ecto-sp13_S_contig1420:4284..5073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1420 4285..5073 +
1681462759.2040386-CDS-Ecto-sp13_S_contig1420:5785..58601681462759.2040386-CDS-Ecto-sp13_S_contig1420:5785..5860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1420 5786..5860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1420.3263.1prot_Ecto-sp13_S_contig1420.3263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1420 4285..5860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1420.3263.1

>prot_Ecto-sp13_S_contig1420.3263.1 ID=prot_Ecto-sp13_S_contig1420.3263.1|Name=mRNA_Ecto-sp13_S_contig1420.3263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MVTQLFRSGSGSDGAPSPSPSSPAPVVPPVVRILACGGTFLPAPAKPMLR
RVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERDGENEEGE
DEEEDEEEEDDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKG
VRVLHNVLCPDRENQLSSSDEDGAAQAPPPPPVTMRVLGRHEEGVRAVAI
SADGRWAVTGDRKGLIKVWEVPREAPPGADREPSSPHGAAEAEFEAHKGY
VYSLCMSPDARTVVRTSRCRLPVLMCLLLFDVWMLWM*
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mRNA from alignment at Ecto-sp13_S_contig1420:4285..5860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1420.3263.1 ID=mRNA_Ecto-sp13_S_contig1420.3263.1|Name=mRNA_Ecto-sp13_S_contig1420.3263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1420:4285..5860+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGCAGTTGTTCCGGAGCGGCAGCGGCTCCGACGGCGCCCCCTC
GCCCTCGCCGTCGTCCCCGGCCCCGGTCGTGCCGCCGGTGGTTCGAATCC
TCGCCTGCGGGGGAACGTTCCTCCCGGCCCCGGCCAAGCCGATGCTGCGG
CGCGTGGACGTAAGGACGGCGGCGGCTGCGGCGAGGGCGGACCAGGCGGG
GGGAGAGGAGGCCGATGTCGTGAGCCGGCCCGCGAGGTCGGACCTGTGCG
CCGCCGCCGCCGGTCGGTCAGAGCGCGACGGCGAGAACGAAGAGGGGGAG
GACGAGGAGGAGGACGAGGAGGAGGAGGATGACGCGCGCGGCGGTGGCGA
GGCGGCGGTGAAGGAGGCCGGGATCATGACGTGCGTCGCGATCTCGGCGG
CCGGCGCGAGGGGGAGGGGAATCCTCGTGACGGGTTCCTACGACAAGGGC
GTGCGCGTGCTCCACAACGTCCTGTGCCCGGACCGCGAGAACCAGCTGTC
ATCGTCTGATGAGGACGGGGCGGCGCAGGCGCCGCCGCCGCCGCCGGTAA
CCATGCGGGTGTTGGGGCGCCACGAGGAAGGGGTGCGGGCGGTGGCCATC
TCGGCGGACGGTCGGTGGGCGGTGACCGGCGACCGTAAGGGCCTCATCAA
GGTGTGGGAGGTCCCGCGGGAGGCGCCGCCGGGGGCGGATCGCGAGCCGT
CGTCGCCGCACGGGGCGGCGGAGGCCGAGTTCGAGGCGCACAAGGGCTAC
GTCTACTCGCTGTGCATGTCGCCGGACGCGCGTACGGTGGTGAGCGGTGG
GTCTGACAAGGCCTTCCGCGTTTGGGATCTCTCGCTGATCGTGTACGCGA
GAAGGATGAGCCTCAACCGGTTAAGGGCGCTCTGGACGGCCGGCCGCCTC
CGCCGCGCGCGGCCAAAGCGTAACAGCAGCGGCGGCGGCGGCGGCGGATC
TTCGTCGTCGTCTCCGAGGAGGATGGGAAGCGCAAGGGGGGGGGGGGGCG
GGGGTAAGGCTGGCGCGCAGGTCTTAAAGGCGTTCGGCAGCAGCAGGGAG
CAACGGCAACAGATCGTCGAGAGCCTGTTCGCCCTCCCCGATATCATTTA
CGCGAAGGTTCTCATGTACGTGTGACAAAACAAACCTGAAGGCGTCGTCA
AAGCTTGCGACGAGAAACAAGAGAAATGTTGCTAGGCGGATGGTTCTAAG
TTCACAGGGGGCGGGCGAGGGTTCAATTGTACGGGTAACGAGGCCGCTAG
TGGTGAGCGATTAGAGCTTGCCATGCCCTGCATGGGAGCGAGCGGTATGG
GGGCGGATAGAGGACCTGTCTCCGTTTTCTACGGAGATGGGGCGTCGGGA
GGAAGGGATGACAGGGATGCCGCGACTGTGTCCTGATTCCGGCGGGGGGA
GGGCGCGTTTGTGGGTGTACGCGCGGCGAGTGGAAGTCGAAGATGCGAGG
AACAGGATGTTTTCGTTAAACTGCGTTCCCGGTTTGTGTCGCATCGCGCA
GGTAAGGACCAGCAGATGCCGCCTACCGGTCTTGATGTGTTTGTTGCTTT
TTGATGTTTGGATGTTGTGGATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1420:4285..5860+

>mRNA_Ecto-sp13_S_contig1420.3263.1 ID=mRNA_Ecto-sp13_S_contig1420.3263.1|Name=mRNA_Ecto-sp13_S_contig1420.3263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1420:4285..5860+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGCAGTTGTTCCGGAGCGGCAGCGGCTCCGACGGCGCCCCCTC
GCCCTCGCCGTCGTCCCCGGCCCCGGTCGTGCCGCCGGTGGTTCGAATCC
TCGCCTGCGGGGGAACGTTCCTCCCGGCCCCGGCCAAGCCGATGCTGCGG
CGCGTGGACGTAAGGACGGCGGCGGCTGCGGCGAGGGCGGACCAGGCGGG
GGGAGAGGAGGCCGATGTCGTGAGCCGGCCCGCGAGGTCGGACCTGTGCG
CCGCCGCCGCCGGTCGGTCAGAGCGCGACGGCGAGAACGAAGAGGGGGAG
GACGAGGAGGAGGACGAGGAGGAGGAGGATGACGCGCGCGGCGGTGGCGA
GGCGGCGGTGAAGGAGGCCGGGATCATGACGTGCGTCGCGATCTCGGCGG
CCGGCGCGAGGGGGAGGGGAATCCTCGTGACGGGTTCCTACGACAAGGGC
GTGCGCGTGCTCCACAACGTCCTGTGCCCGGACCGCGAGAACCAGCTGTC
ATCGTCTGATGAGGACGGGGCGGCGCAGGCGCCGCCGCCGCCGCCGGTAA
CCATGCGGGTGTTGGGGCGCCACGAGGAAGGGGTGCGGGCGGTGGCCATC
TCGGCGGACGGTCGGTGGGCGGTGACCGGCGACCGTAAGGGCCTCATCAA
GGTGTGGGAGGTCCCGCGGGAGGCGCCGCCGGGGGCGGATCGCGAGCCGT
CGTCGCCGCACGGGGCGGCGGAGGCCGAGTTCGAGGCGCACAAGGGCTAC
GTCTACTCGCTGTGCATGTCGCCGGACGCGCGTACGGTGGTAAGGACCAG
CAGATGCCGCCTACCGGTCTTGATGTGTTTGTTGCTTTTTGATGTTTGGA
TGTTGTGGATGTAG
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