mRNA_Ecto-sp13_S_contig14157.3233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14157.3233.1
Unique NamemRNA_Ecto-sp13_S_contig14157.3233.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: D8LNH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.890e-74
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPSTTETSGXXXRGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALVVLFGGWKVAAVIVFAYVIINQKPRGR 417
            VRIINGEIVSDDDPRVAGPQRR XXXXXXXXXQGRAGYG VASLLDPPST E +G   RGPAA GRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPF+YLMIAALVVLFGGWKVAA+IVFAYV+INQKPRGR
Sbjct:    2 VRIINGEIVSDDDPRVAGPQRRGXXXXXXXXXQGRAGYGHVASLLDPPSTAEATGGGARGPAAGGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFVYLMIAALVVLFGGWKVAALIVFAYVLINQKPRGR 140
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: A0A836CLX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.270e-14
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPSTTETSGXXXRGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALVVLFGGWKVAAVIVFAYVI 393
            VRIINGEIV D+DPR+    + A           R G+G       P             P+A     GA+  PL +LA+M+GV+G+T+TIP   GV  + V  I+L++ A V L  GWK  A     YV+
Sbjct:    1 VRIINGEIVQDNDPRLRQRTQSAATTA-------RGGFGAGDGAARPT------------PSAAAMAGGAAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVV 112
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: A0A7S0IP37_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IP37_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 8.540e-12
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:    7 IINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPS---TTETSGXXXRGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALVVLFGGWKVAAVIVFAYVIINQKPRG 414
            II+GEIV D+DPR    + +              G GR A    P     T +T+     G AA     GAS  PLD LA MIGVQG+++T+P    +  ++VP I L++  +V LF GW+V AV    +V+      G
Sbjct:   43 IIDGEIVPDNDPRAIAKRNKV-------------GTGRAAGAPAPTPQRHTAQTAHTTAPGGAADSAMGGAS--PLDALANMIGVQGQSLTVPAVWRLPAREVPLIVLILLGVVTLFFGWQVLAVAALLHVVSGLSDAG 166
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: A0A484E731_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E731_BRELC)

HSP 1 Score: 65.5 bits (158), Expect = 5.700e-11
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPSTTETSGXXXRGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALVVLFGGWKVAAVIVFAYVIINQKP 408
            VRIINGEIV DDDPRV    +           Q +  + R   +    S+   SG   R P A G        PL++LA  +G+ G T+ +P  LG   + +  IY+++  L+    GW+    + FAY +I Q+P
Sbjct:    2 VRIINGEIVPDDDPRVRAQLQ---------PQQNQLPHRRFGYVHGSKSSVAPSGSGTRAPPAPG------LSPLEELARQVGLDG-TLVVPAVLGFPARPILKIYVVMGVLLTAVFGWRALVFLCFAYFLIKQQP 121
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: A0A7S2C2E5_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2E5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.250e-9
Identity = 50/149 (33.56%), Postives = 68/149 (45.64%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPSTTETSGXXXRGPAAWGRGAGASTGPLDK----LAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALV-VLFGGWKVAAVIVFAYVIIN-----QKPRGR 417
            V+IINGEIV DDDPR    ++RA              +G         S     G     P+       A   PL K    LA+ + ++GR VTIP   GV + +V  IYL+I  +V VL   W++ AV V  Y +I      Q+ +GR
Sbjct:    7 VKIINGEIVQDDDPRAQRLRQRASAAQRPIPTS--VNFGGSGGRAHSSSRGGNGGFGGTPPSTPVASDPAQQNPLMKIVQQLAKFLNIEGRLVTIPAVFGVPQSEVELIYLIIIGVVSVLSKSWRIPAVAVVVYFVIKHNETQQQQQGR 153
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BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Match: A0A0M0JAQ1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAQ1_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-8
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGPQRRAXXXXXXXXXQGRAGYGRVASLLDPPSTTETSGXXXRGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFIYLMIAALVVLFGGWKVAAVIVFAYVI 393
            V IINGEIV D+DPR    +                G   + +L          G    G    G   GA  GPLD++AE +G++G++V IP    +  ++V  I+++I AL+ LF GW + AV    +V+
Sbjct:    2 VVIINGEIVPDNDPRAIARRNPKPAASTAP------GQSNIRNL---------HGGGGAGMPRMGGAGGAGPGPLDQVAEALGIRGQSVEIPAIWRLPARRVQLIHIVILALLALFFGWHILAVAAVLHVV 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14157.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LNH2_ECTSI1.890e-7491.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLX7_9STRA3.270e-1436.64Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S0IP37_9EUKA8.540e-1235.97Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A484E731_BRELC5.700e-1133.09Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S2C2E5_9STRA2.250e-933.56Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A0M0JAQ1_9EUKA1.410e-832.06Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14157contigEcto-sp13_S_contig14157:780..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score67.0
Seed ortholog evalue7.9e-09
Seed eggNOG ortholog4787.PITG_02079T0
Model size420
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CT53@1,2REV7@2759,3QG1A@4776
Cds size420
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462756.3864052-CDS-Ecto-sp13_S_contig14157:779..8601681462756.3864052-CDS-Ecto-sp13_S_contig14157:779..860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14157 780..860 -
1681462756.3999195-CDS-Ecto-sp13_S_contig14157:1769..19321681462756.3999195-CDS-Ecto-sp13_S_contig14157:1769..1932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14157 1770..1932 -
1681462756.4090621-CDS-Ecto-sp13_S_contig14157:2514..26901681462756.4090621-CDS-Ecto-sp13_S_contig14157:2514..2690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14157 2515..2690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14157.3233.1prot_Ecto-sp13_S_contig14157.3233.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14157 780..2690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14157.3233.1

>prot_Ecto-sp13_S_contig14157.3233.1 ID=prot_Ecto-sp13_S_contig14157.3233.1|Name=mRNA_Ecto-sp13_S_contig14157.3233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
VRIINGEIVSDDDPRVAGPQRRAGGGGGGGGGQGRAGYGRVASLLDPPST
TETSGGGARGPAAWGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQ
QVPFIYLMIAALVVLFGGWKVAAVIVFAYVIINQKPRGR*
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mRNA from alignment at Ecto-sp13_S_contig14157:780..2690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14157.3233.1 ID=mRNA_Ecto-sp13_S_contig14157.3233.1|Name=mRNA_Ecto-sp13_S_contig14157.3233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1911bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14157:780..2690- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGAATCATAAATGGGGAAATCGTCAGCGACGATGACCCTCGAGTCGC
CGGACCGCAGCGGCGAGCAGGAGGAGGAGGAGGAGGAGGCGGGGGACAAG
GAAGGGCAGGGTACGGCCGCGTTGCGTCCCTCCTCGACCCGCCATCTACC
ACAGAAACAAGCGGCGGGGGTGCAAGGTAATCGATGTCATGCCGTGTACC
GTCTACGTTGTGAACCCATCATTTGCAGTGATGCCTTTGGGAAACGCCGC
TAGCTGGTATGTAGAATATCTGGTGCTGTGGTTCGAGGTCGAGTTGGGCT
GAAGAGAATTCCGGGGTGTCGATTTTGCCAGACAAGGCTTATGAGCCTAT
TTTCCCTACGCAAATATCAGAATCTTGCGTTGCGTTCATTCTCTTCGAGA
CCAGCCAGCCACAAATGACCTGAGTCAAAGCACTAAACCACGCGCGGAAT
TCCTTTCCGTGGAGTGCATTTGAGCCCAAAGCATGCCACCTCCTCACTGT
CTCGAGATGGCGTAGTCCGATGTGGGAATGCCTTGAAGTACCTCCTTGCC
CAAGTGAGCCACAGCGAGCACCTACTCTCTACGCAAGGAAAAATTACCAT
CGCCCGCCGCTGCCATGAACGTTGCTTCAAATAAAACAATGGTTTATCCA
CCCCGACCAAAACCGACACTATGTTGGCGAATTCTCGCGCGCACAGTCGA
CTATTTTGTTCCCCATTGCTGTGCGCACGATTCAACGTCCATCCTCCACC
CACACAAGGGGGCCAGCAGCTTGGGGAAGAGGAGCAGGAGCGTCGACGGG
ACCCCTGGACAAACTGGCGGAGATGATAGGAGTGCAGGGGCGAACCGTGA
CCATCCCCGGCGCACTGGGCGTACAGGAGCAACAGGTCCCCTTCATCTAT
CTCATGATTGCTGCGTTGGTGGTAAGTAGTGGAACTCTGCGAGAATCTTC
TCCTGATGTTGCTGCTGCTGCTAGCTTCATTAGTCTGTAGCGATATGCGC
CGAAGCAGACGCGCGCCATACCGGCCCTTCATGTTGTAATTAGTGCTTGT
TGGAGCAACGATTTGTAGAGCGACAAAACCCACGCGGGGTGCCAGCCTCT
ATTCGCACGTCACCTCGACCGCCGCTGCGTGCAAGGTTGCAAGGGTTTCT
GTGACCTGTGTCTCGTAGCCTTTGCTGAAGCTCGGCAGGGAAAGTCCCCC
GGCCCTCGATCCCCGTACTAACCGCATGAATCACGCGGTGATTTTTTTCA
ACTCCAGTGCCTCGCGGTCTTGCACGCCCACGCCGATCTTATGTACAATG
CCCGCCAATTCTCGGGAACTTGCAGCAAGCAAAGAATCATGCCCCCCACC
TGCCTGCTACACCTTAGGGAAAGACAGGTACGGGGGGGCACGAAGTTGCC
CATGTCTCCTCGGTCAATTTTCTGTCGCAACACCAGAACTTGGGAACCCT
CACATTAACCGGTCATCACACCCACCCTAGACAGACTTTCAAAACTCGAT
TGCTCCATCCATAATCAAGAGGTTCTGAAAGCTGACCGATGCGTCTAAGG
AAACCTCAACATGACACCTTTCTAAAATCATCGTTGTCGGAATGGTCGGG
GAGAAAGAAGGGGTCGGAAATGCCGTGCTAAAATAGGCGGTGTGCGACGG
TCTTATCGCTTTGTATGCGCATGCCTAGTCTCGCCTCTTGGCGCGGTGAA
AAATCGCTCGGTTCGGCAGCCTATATAGTTGCCATGATTTTGGTTGCTCG
CTCGTATTCCGTCTTTCGACCTCTCAGAGTAGACGGCACGCTCAACGTAA
CTATCCCTCTGTCCCAATGTCTGTTTTCAGGTCCTTTTCGGGGGCTGGAA
GGTGGCGGCAGTAATCGTGTTCGCCTACGTCATCATCAACCAAAAGCCCC
GGGGCCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14157:780..2690-

>mRNA_Ecto-sp13_S_contig14157.3233.1 ID=mRNA_Ecto-sp13_S_contig14157.3233.1|Name=mRNA_Ecto-sp13_S_contig14157.3233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14157:780..2690- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGAATCATAAATGGGGAAATCGTCAGCGACGATGACCCTCGAGTCGC
CGGACCGCAGCGGCGAGCAGGAGGAGGAGGAGGAGGAGGCGGGGGACAAG
GAAGGGCAGGGTACGGCCGCGTTGCGTCCCTCCTCGACCCGCCATCTACC
ACAGAAACAAGCGGCGGGGGTGCAAGGGGGCCAGCAGCTTGGGGAAGAGG
AGCAGGAGCGTCGACGGGACCCCTGGACAAACTGGCGGAGATGATAGGAG
TGCAGGGGCGAACCGTGACCATCCCCGGCGCACTGGGCGTACAGGAGCAA
CAGGTCCCCTTCATCTATCTCATGATTGCTGCGTTGGTGGTCCTTTTCGG
GGGCTGGAAGGTGGCGGCAGTAATCGTGTTCGCCTACGTCATCATCAACC
AAAAGCCCCGGGGCCGGTAG
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