mRNA_Ecto-sp13_S_contig14106.3207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14106.3207.1
Unique NamemRNA_Ecto-sp13_S_contig14106.3207.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.620e-67
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 MASRMLARSGVAAARRVAATPASAGARRSASNLKPVDQ--AYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQEPR 336
            MASRMLARSGVAA RRVAAT ASAGARRSASNLKPVDQ  AYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQ+PR
Sbjct:    1 MASRMLARSGVAAGRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQQPR 114
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.710e-9
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  124 LNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQE 330
            L  G   K+E WE I   T V   + L  G+ Y P T I++WA+ EALAR +  E G  VE G+ Y+QE
Sbjct:   44 LGPGEKRKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQE 112
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A1Z5KG99_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KG99_FISSO)

HSP 1 Score: 49.3 bits (116), Expect = 5.870e-5
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  139 HYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALAR 273
            H K+EGWEG++AA + +S +++ A +G  P+T I+ WA+ EA AR
Sbjct:   42 HPKREGWEGVIAAWYGSSFLLICAVLGTRPDTSIEAWAQKEAAAR 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE3.620e-6795.61NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA3.710e-943.48NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A1Z5KG99_FISSO5.870e-546.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14106contigEcto-sp13_S_contig14106:1385..4498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004975.1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.4687147-CDS-Ecto-sp13_S_contig14106:1384..14981681462754.4687147-CDS-Ecto-sp13_S_contig14106:1384..1498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14106 1385..1498 +
1681462754.4772687-CDS-Ecto-sp13_S_contig14106:3363..34921681462754.4772687-CDS-Ecto-sp13_S_contig14106:3363..3492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14106 3364..3492 +
1681462754.4853137-CDS-Ecto-sp13_S_contig14106:4402..44981681462754.4853137-CDS-Ecto-sp13_S_contig14106:4402..4498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14106 4403..4498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14106.3207.1prot_Ecto-sp13_S_contig14106.3207.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14106 1385..4498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14106.3207.1

>prot_Ecto-sp13_S_contig14106.3207.1 ID=prot_Ecto-sp13_S_contig14106.3207.1|Name=mRNA_Ecto-sp13_S_contig14106.3207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MASRMLARSGVAAARRVAATPASAGARRSASNLKPVDQAYFLNLGPHYKK
EGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLP
VEYGKIYSQEPR*
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mRNA from alignment at Ecto-sp13_S_contig14106:1385..4498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14106.3207.1 ID=mRNA_Ecto-sp13_S_contig14106.3207.1|Name=mRNA_Ecto-sp13_S_contig14106.3207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14106:1385..4498+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCTAGAATGCTTGCCCGCTCGGGAGTAGCTGCTGCAAGGAGAGT
GGCAGCGACACCTGCGTCGGCTGGGGCGCGACGAAGCGCATCGAACTTGA
AACCTGTAGACCAGGTGAGGAGTGGGTTCCCAAGCTTTCCTTACACCCCA
TAAGGCGGATGATGCGAGGGGCGTTGGCAGAGCCGTTGTGCATGATCCGT
AGGAAACGAGGATGGGTTGTGCGTTCGCGATGCTGCAATACCTGTGCGTT
TCAGGGTCAAGGTGTTGTAGATCATGAGGGGTGCACAATGAAAGTATCAT
CTACGTCTCGATTACAGCAAGCATTCTCCGTTTCGACATGTGTTGCAGCA
GCACGAGTCAGTCCGTGGTGTGTTGTGATGCTTTCGGACCTGTTGGAGGT
TGCCAGTGTACAGGAGTAGTGCAGTGTTGTTGTTGCCTGTTTGCCGTACA
TGTGGTGGTGTATGCCATGCGTCGAAGAGGTGTTAGGTGCTGCCTGGTGG
TAATGGGCTGCATCCGTATCGGGCAACGAGCGGGGCCGATCTCGCCACCG
ACTGAGGCTGCGGGAAGGAGTTACGCCGCCCGCCTGCTCCCTTCTTATTG
CCATACAAATATCTGCTGTACAGCAGGGTGGGGGGAACACGCCGCGAGCG
CCGTAGGTGCGACGGGGCGGTCCCCCCTCCACGGAGTTGTTGTGTACCGC
CGTACGCCGCTACGGCTAAAAGTGGTACAAAAGGTGGTAGGCAAGTAGTT
GTTTGCTTGCTGTACGGTCGGCGGCGCGATAGCTCCCTTGTTTCTGTTGT
TTATGCCCGAACCCCATATAGCTGCCTTTAACATGTGAACTGCAATCCCA
CGAGGCTCGTCAAGCTAGATGTACTGCGGCATTGTGGCACCGCTACCGAT
TGCTGCCGAACATGGTCATGTCCAATGTCTCATGTTTTTTTTTACGGCAT
GGTAAGCTAGCAGCTGTGCGTGTGTCCCTGCTGCCACCTGCTGTTTTGTT
CAGCAGTAACCCCCATGAAAGGGCTTGGGGTTGTGTTTCTTCTGTATGCT
GACTTGAAACCCCCACCAATGTTCTTGTGCCTTTCTGCAACATGATCTGT
CGCTACTCTGCAGCAGTGCTGCATGCATGCGATGTCTGTCATTGGCTTGG
GAGATATGTCGAGTGTTACATCATACCAAAAGACAACGGCAGTCCCCCCC
TTGTGTTGTGATGGCTACACACATACGTCGTCCGTCGCGGCTCTTTGTGC
CCTTGTATGTACAGTACGTCTTTGTGGTTGTTGGGACCGCCTTCACGAGA
AGCGAAGTTTTATGACGAAAATAGAATAGGGAGGGGGTACTCAGACGGAA
CCTAGCCCAACCCAACTTCCCCGATTGGCTTTATCCAACATGTTCACTTA
ACCCTAACCCTTCTAGTACTGGGAGCCCAGATGGGGACAGCATGGGGATA
CAACACTCAAATGCCTATATACGGCACTGTAGTCACCCTAGGCTCCGCTG
TGTGCAACGCACGTGAGAAACCTTGGTCTAGTATGCTTGGCTGAGGTGGT
ACGCTGTGTGGTACGCTGTGTGATTCCTCTCCTGGGCCTCTGACTTTTGC
GGTACACATCTCCCAACCCGAGTGCCCCCTGGATCATAAAACTGTACCTC
GCCTGGTACTGGAAAATTTTTCTGACTTGGCTTCAGTATGAAGAGTGTCT
CCACGTGTCTTGGGGAAACCTTTCATACTGAAGCCAAGTCATCACCCTTT
GTCTGGCAAGGAGCTCAGATTCTTTGCCGGGACTGTAGCCCCTCGACCAA
TGGCTGACAAACATTTTTGCGACATTTTCTTTTTGCGGAGGGCCTGCCAC
TGACTATGAACGTAGAAGGCTATTGTACTGCGTTGTTCGCCCTGCACCGT
TAAAATTTTCTCCGACTTTTTCTGTCGTTCGCGTTTTTTTACTCGGTCTT
GACTGCTGTACGGCTTTGACCAGAACAAGGCCTACTTCCTGAATCTAGGA
CCCCACTACAAGAAGGAGGGATGGGAGGGGATCATGGCGGCGACTTGGGT
GGCCAGCGCGGTGATTCTTATTGCTGGAGTGGGCTACGGCCCGGAGACGG
GCATTAAGGTGAACTGCAGCAGTGGTCTTGACGTTTCTCTGCGGTACGGT
AGAGGTCCTTCGGTGTACAAGGTCCCGGTATATGTTAAAGGCGGTGTACG
GTACACGGTACGTAGGATGCGAGCCTCTGAACCGGCATTGCGGATAAACG
GCATCATTCAGGATATGGTATGAACAACTAGAATATTCCATCTGTGCCAG
GTGATTGCACCGGCATTCTACGGGGCAACCGGAATAAAAACGGGACCACT
GCTGTAGTTGCGTCTTTTGCGCGTGGTAGTGGCCGCTTTTCTCTGTGCCT
CTGGCATTCGCAGCAAAAGAATGAAAGACTGCTGTGTGTCATCGCTCCCC
AGCCTTGTGTTTGACGGGCGCACTGCTGGAGTGGATGGCTCTACAATGTG
TACGCACTGCTGTCCGGCGTACTCACCGACCAGACCCTGCTCCCTAAGGG
GACTGAATGAGACACGGGGTACCTTTGAATCCACTGTCGGCGACAGGTAG
AAGATCACCACTATTATAGTACTTCCTCGAGTATGTGTCAAGGGGCGTGT
GCGCCACGGGTTCTCCGCTTCGGCTTTAGTATTTGGTACCATCTGAAACA
GGCGTTTTCCCGTTAGGCGGTGGGTGAGCCAGAAGCTGTAGCTATTTTGG
CTGAAGCGGCCGTATGTCAGCCTGTTGATTACGGAAGAGAGCACCACCCG
CAGCGGGTTATCTCAATCTCCACCACACTCGCAAGTAGTCAAGCGAGTGA
CAGCCGATGATATTCATCGAACAAGTTACACTCTTTTAGGAAGCATGACA
CTCAGCAACAACCTCTGATGGTGCTCAATCAACGTGCATCACGTTTTTTA
GGAAGCGTGACACATGTTTGAGCAATGACCACTAACGAATGACTGAATGG
CATGCTGTGCTGTAACAGGAGTGGGCTAGAGACGAGGCGCTTGCTAGGAA
CGTGCGTGAGGAGCAGGGGCTGCCGGTAGAGTACGGAAAGATCTACTCCC
AAGAGCCTAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14106:1385..4498+

>mRNA_Ecto-sp13_S_contig14106.3207.1 ID=mRNA_Ecto-sp13_S_contig14106.3207.1|Name=mRNA_Ecto-sp13_S_contig14106.3207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14106:1385..4498+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCTAGAATGCTTGCCCGCTCGGGAGTAGCTGCTGCAAGGAGAGT
GGCAGCGACACCTGCGTCGGCTGGGGCGCGACGAAGCGCATCGAACTTGA
AACCTGTAGACCAGGCCTACTTCCTGAATCTAGGACCCCACTACAAGAAG
GAGGGATGGGAGGGGATCATGGCGGCGACTTGGGTGGCCAGCGCGGTGAT
TCTTATTGCTGGAGTGGGCTACGGCCCGGAGACGGGCATTAAGGAGTGGG
CTAGAGACGAGGCGCTTGCTAGGAACGTGCGTGAGGAGCAGGGGCTGCCG
GTAGAGTACGGAAAGATCTACTCCCAAGAGCCTAGGTAA
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