prot_Ecto-sp13_S_contig14106.3207.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14106.3207.1
Unique Nameprot_Ecto-sp13_S_contig14106.3207.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length113
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.620e-67
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0 
Query:    1 MASRMLARSGVAAARRVAATPASAGARRSASNLKPVDQ--AYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQEPR 112
            MASRMLARSGVAA RRVAAT ASAGARRSASNLKPVDQ  AYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQ+PR
Sbjct:    1 MASRMLARSGVAAGRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQQPR 114
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.710e-9
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 0 
Query:   42 LNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQE 110
            L  G   K+E WE I   T V   + L  G+ Y P T I++WA+ EALAR +  E G  VE G+ Y+QE
Sbjct:   44 LGPGEKRKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQE 112
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BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Match: A0A1Z5KG99_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KG99_FISSO)

HSP 1 Score: 49.3 bits (116), Expect = 5.870e-5
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:   47 HYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALAR 91
            H K+EGWEG++AA + +S +++ A +G  P+T I+ WA+ EA AR
Sbjct:   42 HPKREGWEGVIAAWYGSSFLLICAVLGTRPDTSIEAWAQKEAAAR 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14106.3207.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE3.620e-6795.61NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA3.710e-943.48NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A1Z5KG99_FISSO5.870e-546.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019329NADH:ubiquinone oxidoreductase, ESSS subunitPFAMPF10183ESSScoord: 14..101
e-value: 4.6E-7
score: 30.0
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..75
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14106contigEcto-sp13_S_contig14106:1385..4498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14106.3207.1mRNA_Ecto-sp13_S_contig14106.3207.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14106 1385..4498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14106.3207.1 ID=prot_Ecto-sp13_S_contig14106.3207.1|Name=mRNA_Ecto-sp13_S_contig14106.3207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MASRMLARSGVAAARRVAATPASAGARRSASNLKPVDQAYFLNLGPHYKK
EGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLP
VEYGKIYSQEPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019329NADH_UbQ_OxRdtase_ESSS_su