mRNA_Ecto-sp13_S_contig1408.3187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI) HSP 1 Score: 211 bits (538), Expect = 3.520e-61 Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 2
Query: 2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAAG 358
DTQLSLEWVYGYSAA SRASACYFSVTNSSD XXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDR Q+FMQEHTDEITALAVSPCGKW+ATGEAGAQPKVFVWNATTKQIRMTAAG
Sbjct: 313 DTQLSLEWVYGYSAAYSRASACYFSVTNSSDXXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRAQTFMQEHTDEITALAVSPCGKWVATGEAGAQPKVFVWNATTKQIRMTAAG 431
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A7S2WHY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHY0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10 Identity = 48/119 (40.34%), Postives = 61/119 (51.26%), Query Frame = 2
Query: 2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRV-QSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAA 355
D+QL +EWVYG+SA R+ A Y DA ++YPAG +AV P G E E QSF EHTD +T LA++P G ATG+ A P+V VW K + AA
Sbjct: 40 DSQLEMEWVYGFSALG-RSHARY-------DAEG------ALLYPAGMIAVRQTVP----GPEAEDPTPKQSFFLEHTDLVTCLALAPNGTLCATGDCAANPRVLVWRVGNKGPSLVAA 140
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A7S3H3H0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3H0_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 8.140e-8 Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2
Query: 2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQ-EHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQI 340
D L+L+WV+GY A R + Y S + S +VY A +AVV + G Q F+Q HTDE+ ++ P G+ ATGEAG QP + +WN+ ++
Sbjct: 192 DVDLALKWVHGYRAYDCRNNVLY-SASGS------------IVYNAASMAVVYNK----------GAGKQQFLQGAHTDEVVSICCHPAGQIFATGEAGRQPSIIIWNSKEMEV 282
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0BN10_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BN10_PARTE) HSP 1 Score: 55.1 bits (131), Expect = 2.580e-6 Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query: 197 GDRVQSFMQEHTDEITALAVSPCGKW-IATGEAGAQPKVFVWNATTKQIR 343
G Q++ +H D+ITA+ ++P + +ATGE GA+P +FVWNA TK+++
Sbjct: 1689 GSNTQTYFNKHEDDITAIDLNPVDRMTVATGELGAKPNIFVWNAETKEVK 1738
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A8J8NUU3_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NUU3_HALGN) HSP 1 Score: 53.5 bits (127), Expect = 8.380e-6 Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 2
Query: 2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEE---GAEVEGDRVQSFMQE---HTDEITALAVSPCGKWIATGEAGAQPKVFVWNATT--KQIRM 346
D + SLE+VYGY SR +A + + DA VY + V+L + + G + R ++ + HTD+IT+L +S W+ATG+ G P VF+WN+ T KQ R+
Sbjct: 85 DVRYSLEYVYGYRCEDSRMNAY---LNPNGDA----------VYMTAALGVILNTKSNTQKFFGGGMVDQRAKNVSDDTNAHTDDITSLTISSDRNWVATGQVGPAPTVFIWNSKTASKQQRI 194
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A067D8Y7_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8Y7_SAPPC) HSP 1 Score: 53.5 bits (127), Expect = 8.940e-6 Identity = 43/118 (36.44%), Postives = 57/118 (48.31%), Query Frame = 2
Query: 11 LSLEWVYGYSA--ASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAAG 358
LSLEW++GYSA A +R + Y S D + YPA VAV+L E G R Q + HTD+I + A+ P ATGE G PK+ VW+A + + T G
Sbjct: 301 LSLEWIFGYSAQDAYARNNVRYLK---SGD----------IAYPAASVAVLL---------EKAGPRQQHVIA-HTDDILSFALHPNRTIGATGETGKTPKLIVWDAASASVLSTHRG 395
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A8J2SIX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIX3_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 4.220e-5 Identity = 31/74 (41.89%), Postives = 37/74 (50.00%), Query Frame = 2
Query: 125 VVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPC--GKWIATGEAGAQPKVFVWNATTKQI 340
+VYPAG V VVL Q Q H D + L V W+ATGE GA+PKVFVW+ATT +
Sbjct: 314 LVYPAGTVGVVLDC----------ASGTQRHAQHHADCVECLRVHHAEGDTWVATGELGARPKVFVWSATTLDV 377
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A075AVI5_ROZAC (Cilia- and flagella-associated protein 52 n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AVI5_ROZAC) HSP 1 Score: 50.8 bits (120), Expect = 7.220e-5 Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 2
Query: 119 VGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEA---GAQPKVFVWNATTKQI 340
+ ++YP G V+ + E Q F+ HT IT LAVS CGK+IA+G++ G Q + +WN TK+I
Sbjct: 31 IHIIYPLGSNIVIKNEKSGE----------QEFLSGHTHPITCLAVSKCGKYIASGQSTHMGFQADILLWNMDTKKI 97
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A5A8DJM8_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJM8_CAFRO) HSP 1 Score: 50.8 bits (120), Expect = 7.340e-5 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2
Query: 125 VVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQI 340
+V+PAG VAV A+P + Q F++ H+D +TA+A+S G+ +ATG+AGA V VW A T ++
Sbjct: 34 LVWPAGAVAV-FARP--------DAMNDQRFLRGHSDIVTAVALSATGRLLATGQAGADSDVVVWEAETGKV 96 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1408.3187.1 >prot_Ecto-sp13_S_contig1408.3187.1 ID=prot_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp RHAAVPGVGVRVLRGFLSGFGVLFFSDEQQRCVRWWWRRRGRGVSCGESGback to top mRNA from alignment at Ecto-sp13_S_contig1408:2358..3159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1408.3187.1 ID=mRNA_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:2358..3159- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1408:2358..3159- >mRNA_Ecto-sp13_S_contig1408.3187.1 ID=mRNA_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:2358..3159- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |