mRNA_Ecto-sp13_S_contig1408.3187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1408.3187.1
Unique NamemRNA_Ecto-sp13_S_contig1408.3187.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.520e-61
Identity = 114/119 (95.80%), Postives = 116/119 (97.48%), Query Frame = 2
Query:    2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAAG 358
            DTQLSLEWVYGYSAA SRASACYFSVTNSSD XXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDR Q+FMQEHTDEITALAVSPCGKW+ATGEAGAQPKVFVWNATTKQIRMTAAG
Sbjct:  313 DTQLSLEWVYGYSAAYSRASACYFSVTNSSDXXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRAQTFMQEHTDEITALAVSPCGKWVATGEAGAQPKVFVWNATTKQIRMTAAG 431          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A7S2WHY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHY0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10
Identity = 48/119 (40.34%), Postives = 61/119 (51.26%), Query Frame = 2
Query:    2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRV-QSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAA 355
            D+QL +EWVYG+SA   R+ A Y       DA         ++YPAG +AV    P    G E E     QSF  EHTD +T LA++P G   ATG+  A P+V VW    K   + AA
Sbjct:   40 DSQLEMEWVYGFSALG-RSHARY-------DAEG------ALLYPAGMIAVRQTVP----GPEAEDPTPKQSFFLEHTDLVTCLALAPNGTLCATGDCAANPRVLVWRVGNKGPSLVAA 140          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A7S3H3H0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3H0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.140e-8
Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2
Query:    2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQ-EHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQI 340
            D  L+L+WV+GY A   R +  Y S + S            +VY A  +AVV  +          G   Q F+Q  HTDE+ ++   P G+  ATGEAG QP + +WN+   ++
Sbjct:  192 DVDLALKWVHGYRAYDCRNNVLY-SASGS------------IVYNAASMAVVYNK----------GAGKQQFLQGAHTDEVVSICCHPAGQIFATGEAGRQPSIIIWNSKEMEV 282          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0BN10_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BN10_PARTE)

HSP 1 Score: 55.1 bits (131), Expect = 2.580e-6
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query:  197 GDRVQSFMQEHTDEITALAVSPCGKW-IATGEAGAQPKVFVWNATTKQIR 343
            G   Q++  +H D+ITA+ ++P  +  +ATGE GA+P +FVWNA TK+++
Sbjct: 1689 GSNTQTYFNKHEDDITAIDLNPVDRMTVATGELGAKPNIFVWNAETKEVK 1738          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A8J8NUU3_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NUU3_HALGN)

HSP 1 Score: 53.5 bits (127), Expect = 8.380e-6
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 2
Query:    2 DTQLSLEWVYGYSAASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEE---GAEVEGDRVQSFMQE---HTDEITALAVSPCGKWIATGEAGAQPKVFVWNATT--KQIRM 346
            D + SLE+VYGY    SR +A    +  + DA          VY    + V+L    + +   G  +   R ++   +   HTD+IT+L +S    W+ATG+ G  P VF+WN+ T  KQ R+
Sbjct:   85 DVRYSLEYVYGYRCEDSRMNAY---LNPNGDA----------VYMTAALGVILNTKSNTQKFFGGGMVDQRAKNVSDDTNAHTDDITSLTISSDRNWVATGQVGPAPTVFIWNSKTASKQQRI 194          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A067D8Y7_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8Y7_SAPPC)

HSP 1 Score: 53.5 bits (127), Expect = 8.940e-6
Identity = 43/118 (36.44%), Postives = 57/118 (48.31%), Query Frame = 2
Query:   11 LSLEWVYGYSA--ASSRASACYFSVTNSSDAXXXXXXXVGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQIRMTAAG 358
            LSLEW++GYSA  A +R +  Y     S D          + YPA  VAV+L         E  G R Q  +  HTD+I + A+ P     ATGE G  PK+ VW+A +  +  T  G
Sbjct:  301 LSLEWIFGYSAQDAYARNNVRYLK---SGD----------IAYPAASVAVLL---------EKAGPRQQHVIA-HTDDILSFALHPNRTIGATGETGKTPKLIVWDAASASVLSTHRG 395          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A8J2SIX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIX3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.220e-5
Identity = 31/74 (41.89%), Postives = 37/74 (50.00%), Query Frame = 2
Query:  125 VVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPC--GKWIATGEAGAQPKVFVWNATTKQI 340
            +VYPAG V VVL                Q   Q H D +  L V       W+ATGE GA+PKVFVW+ATT  +
Sbjct:  314 LVYPAGTVGVVLDC----------ASGTQRHAQHHADCVECLRVHHAEGDTWVATGELGARPKVFVWSATTLDV 377          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A075AVI5_ROZAC (Cilia- and flagella-associated protein 52 n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AVI5_ROZAC)

HSP 1 Score: 50.8 bits (120), Expect = 7.220e-5
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 2
Query:  119 VGVVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEA---GAQPKVFVWNATTKQI 340
            + ++YP G   V+  +   E          Q F+  HT  IT LAVS CGK+IA+G++   G Q  + +WN  TK+I
Sbjct:   31 IHIIYPLGSNIVIKNEKSGE----------QEFLSGHTHPITCLAVSKCGKYIASGQSTHMGFQADILLWNMDTKKI 97          
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Match: A0A5A8DJM8_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJM8_CAFRO)

HSP 1 Score: 50.8 bits (120), Expect = 7.340e-5
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  125 VVYPAGKVAVVLAQPLDEEGAEVEGDRVQSFMQEHTDEITALAVSPCGKWIATGEAGAQPKVFVWNATTKQI 340
            +V+PAG VAV  A+P        +    Q F++ H+D +TA+A+S  G+ +ATG+AGA   V VW A T ++
Sbjct:   34 LVWPAGAVAV-FARP--------DAMNDQRFLRGHSDIVTAVALSATGRLLATGQAGADSDVVVWEAETGKV 96          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1408.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G0Y1_ECTSI3.520e-6195.80N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S2WHY0_9STRA1.050e-1040.34Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3H3H0_9STRA8.140e-833.33Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0BN10_PARTE2.580e-644.00Uncharacterized protein n=2 Tax=Paramecium tetraur... [more]
A0A8J8NUU3_HALGN8.380e-632.52Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A067D8Y7_SAPPC8.940e-636.44EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
A0A8J2SIX3_9STRA4.220e-541.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A075AVI5_ROZAC7.220e-536.36Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A5A8DJM8_CAFRO7.340e-540.28Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1408contigEcto-sp13_S_contig1408:2358..3159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size362
Hectar predicted targeting categoryother localisation
Exons3
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.3525755-CDS-Ecto-sp13_S_contig1408:2359..24121681462752.3525755-CDS-Ecto-sp13_S_contig1408:2359..2412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 2360..2412 -
1681462752.3651166-CDS-Ecto-sp13_S_contig1408:2595..27051681462752.3651166-CDS-Ecto-sp13_S_contig1408:2595..2705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 2596..2705 -
1681462752.375993-CDS-Ecto-sp13_S_contig1408:2962..31591681462752.375993-CDS-Ecto-sp13_S_contig1408:2962..3159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 2963..3159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1408.3187.1prot_Ecto-sp13_S_contig1408.3187.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1408 2360..3159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1408.3187.1

>prot_Ecto-sp13_S_contig1408.3187.1 ID=prot_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
RHAAVPGVGVRVLRGFLSGFGVLFFSDEQQRCVRWWWRRRGRGVSCGESG
RGASPTARRGGSRGGRRQGPKLHAGTHGRDHGPGGEPLRQVDRHRRSGCP
TQGVCLERHNEADQNDGRRF
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mRNA from alignment at Ecto-sp13_S_contig1408:2358..3159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1408.3187.1 ID=mRNA_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:2358..3159- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACGCAGCTGTCCCTGGAGTGGGTGTACGGGTACTCCGCGGCTTCCT CTCGGGCTTCGGCGTGTTATTTTTCAGTGACGAACAGCAGCGATGCGTCA GGTGGTGGTGGCGGCGGCGTGGGCGTGGTGTATCCTGCGGGGAAAGTGGC CGTGGTGCTAGCCCAACCGCTCGACGAGGAGGGAGCAGAGGTGGAAGGTG TGAACCGGCGTGGCCAGTGCTTGCGCACATCTCTCTCTGTGCAGAGTCCT GCGACACCATGCTCACAAAAAAAACCAACAACGCAGGGAGCACTGTACGG TGACGGATTTATTGTCGGCATAAATGCGTGCAACCTCAAGTTCACCCCAT CCTCCAACCCTACATTGCTGTGATGTACTTCTAAGAGCTGATTTCATTCC TCGACATCAGCCTGCAAGCGGTATTACTGTTTCTTGTTCTTTGGTCTTGT ACAGGAGACAGGGTCCAAAGCTTCATGCAGGAACACACGGACGAGATCAC GGCCCTGGCGGTGAGCCCTTGCGGCAAGTGGATCGCCACCGGAGAAGCGG GTGCCCAACCCAAGGTGAACGGACCGAAATATTGAGGGTGGATTCACGCT CTACGTCTCGTGCAAACTCTCCACCAATCCCCATGCGCAACCAATTCCCC CGTCACTATAGCCGAACTACATTCTACCGTGACAGGCACCACTTCTGACA CCAGAAACCTTGTCTGCTTGGCTGCACACACATAACCCTGTTCCCAGGTG TTTGTCTGGAACGCCACAACGAAGCAGATCAGAATGACGGCCGCAGGTTT CC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1408:2358..3159-

>mRNA_Ecto-sp13_S_contig1408.3187.1 ID=mRNA_Ecto-sp13_S_contig1408.3187.1|Name=mRNA_Ecto-sp13_S_contig1408.3187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:2358..3159- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACGCAGCTGTCCCTGGAGTGGGTGTACGGGTACTCCGCGGCTTCCT
CTCGGGCTTCGGCGTGTTATTTTTCAGTGACGAACAGCAGCGATGCGTCA
GGTGGTGGTGGCGGCGGCGTGGGCGTGGTGTATCCTGCGGGGAAAGTGGC
CGTGGTGCTAGCCCAACCGCTCGACGAGGAGGGAGCAGAGGTGGAAGGAG
ACAGGGTCCAAAGCTTCATGCAGGAACACACGGACGAGATCACGGCCCTG
GCGGTGAGCCCTTGCGGCAAGTGGATCGCCACCGGAGAAGCGGGTGCCCA
ACCCAAGGTGTTTGTCTGGAACGCCACAACGAAGCAGATCAGAATGACGG
CCGCAGGTTT
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