mRNA_Ecto-sp13_S_contig14070.3180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14070.3180.1
Unique NamemRNA_Ecto-sp13_S_contig14070.3180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.980e-46
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1
Query:   19 GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPV+ ESLRYGSS+GGKTVHNEDESLAKKLKAAAKKLNLRTHRVND
Sbjct:  345 GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSSNGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 430          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.370e-45
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1
Query:   19 GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPV+ ESLRYGS DGGKTVHN+DESLAKKLKAAAKKLNL THRVND
Sbjct:   30 GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSDDGGKTVHNDDESLAKKLKAAAKKLNLCTHRVND 115          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 5.270e-45
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1
Query:   19 GAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            GAGHDLRGATHYL  RIRGLRYALQCLIDYKGFRMTAQAVLPVSSE+LRYGSSD G+TVHN+ E+LAKKLKA AKKLNLRTH VND
Sbjct:  109 GAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQAVLPVSSETLRYGSSDAGRTVHNDSENLAKKLKAVAKKLNLRTHWVND 194          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: Q54JI4_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54JI4_DICDI)

HSP 1 Score: 91.7 bits (226), Expect = 1.380e-19
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            A ++L+G   Y    + GL Y L  LIDYKGFR+ A +VLP+SS++++YGSSD G TVHN    L +K+K A +KLNL++HRV  
Sbjct:  420 ASNELKGLVSYYMAGVPGLNYPLMALIDYKGFRLIALSVLPISSDTIKYGSSDSGSTVHNSIPDLNEKMKEAGRKLNLKSHRVGS 504          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: A0A7S4I6Y8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I6Y8_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 3.820e-19
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRV 270
            AGHDL+G   Y    I GL + L  L+DY G+R+ A +VLP++ ++L YGS+D G T+HN + +LA+K+K A + LNL+TH V
Sbjct:   31 AGHDLKGLISYFNLGIAGLHFPLMALVDYLGYRLIAISVLPITKDTLVYGSADAGVTLHNSNPTLARKMKLAGEMLNLKTHTV 113          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: A0A8J4PLZ3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLZ3_9MYCE)

HSP 1 Score: 89.7 bits (221), Expect = 6.520e-19
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            A ++L+G   Y  T ++GL Y L  LIDYKGFR+ A +VLP+SS++++YGSSD G  VH+E   L  K+K   +KLNL+ HRV  
Sbjct:  321 ASNELKGLISYYMTDVKGLNYPLMALIDYKGFRLIALSVLPISSDTIKYGSSDSGSVVHSEIPELNDKMKQVGEKLNLKAHRVGS 405          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: A0A151ZSI6_9MYCE (Leucine-rich repeat-containing protein (LRR) n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSI6_9MYCE)

HSP 1 Score: 87.4 bits (215), Expect = 4.220e-18
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            A ++L+G T Y    + GL Y +  LIDYKGFR+ A +VLP+SSE++RYGSSD G  VH + + L  K+    +KLNL+ HRV  
Sbjct:  288 ASNELKGLTSYYTAGVEGLNYPMMALIDYKGFRLIALSVLPISSETIRYGSSDSGTVVHYDIDELNNKMLETGRKLNLKPHRVGS 372          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: F0ZL85_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZL85_DICPU)

HSP 1 Score: 87.4 bits (215), Expect = 4.220e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND 276
            A ++L+G   Y    ++GL Y L  LIDYKGFR+ A +VLP+S+E+++YGSSD G  VH+    L +K+K A KKLNL+ H V  
Sbjct:  319 ASNELKGLISYYMAGVKGLNYPLMALIDYKGFRLIALSVLPISNETIKYGSSDSGSIVHSNIPDLNEKMKEAGKKLNLKAHHVGS 403          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: F4PYX7_CAVFA (Histidine kinase A n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PYX7_CAVFA)

HSP 1 Score: 87.0 bits (214), Expect = 5.750e-18
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRV 270
            AGH+L+G   Y   R+  L + L  LIDY+G+R+ A ++LP++SE++ YGSSDGG TVH+ED    +K+K +A+ LNL+ H V
Sbjct:  542 AGHELKGLMSYYNARVEDLHHPLMALIDYRGYRLVAMSLLPINSETIVYGSSDGGITVHSEDPGFNEKMKQSAQALNLKGHLV 624          
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Match: UPI000644BD45 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BD45)

HSP 1 Score: 86.7 bits (213), Expect = 7.850e-18
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   22 AGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVSSESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRV 270
            AGH+L+G   Y   R+ GL + L  LIDY+G+R+ A ++LP++ E++ YGSSDGG TVHN++E   +K+K +A  LN++ H V
Sbjct:  402 AGHELKGLMSYYNARVDGLHHPLMALIDYRGYRLVAMSLLPINGETIVYGSSDGGITVHNQNELFNEKMKKSASILNIKEHMV 484          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14070.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G9_ECTSI2.980e-4696.51Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFE7_9PHAE3.370e-4594.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF64_ECTSI5.270e-4588.37Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
Q54JI4_DICDI1.380e-1950.59Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A7S4I6Y8_9EUKA3.820e-1948.19Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A8J4PLZ3_9MYCE6.520e-1949.41Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A151ZSI6_9MYCE4.220e-1848.24Leucine-rich repeat-containing protein (LRR) n=1 T... [more]
F0ZL85_DICPU4.220e-1848.24Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
F4PYX7_CAVFA5.750e-1848.19Histidine kinase A n=1 Tax=Cavenderia fasciculata ... [more]
UPI000644BD457.850e-1846.99hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14070contigEcto-sp13_S_contig14070:148..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score167.5
Seed ortholog evalue2.8e-39
Seed eggNOG ortholog2880.D7G5G9
Model size276
KEGG koko:K02987
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.0088556-CDS-Ecto-sp13_S_contig14070:147..2911681462752.0088556-CDS-Ecto-sp13_S_contig14070:147..291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14070 148..291 -
1681462752.0212622-CDS-Ecto-sp13_S_contig14070:1022..11541681462752.0212622-CDS-Ecto-sp13_S_contig14070:1022..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14070 1023..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14070.3180.1prot_Ecto-sp13_S_contig14070.3180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14070 148..1154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14070.3180.1

>prot_Ecto-sp13_S_contig14070.3180.1 ID=prot_Ecto-sp13_S_contig14070.3180.1|Name=mRNA_Ecto-sp13_S_contig14070.3180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
YLSLLVGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQAVLPVS
SESLRYGSSDGGKTVHNEDESLAKKLKAAAKKLNLRTHRVND
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mRNA from alignment at Ecto-sp13_S_contig14070:148..1154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14070.3180.1 ID=mRNA_Ecto-sp13_S_contig14070.3180.1|Name=mRNA_Ecto-sp13_S_contig14070.3180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14070:148..1154- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTCTCATTGTTGGTAGGAGCCGGGCACGACTTGAGAGGCGCGACACA TTACCTGGCCACGCGCATTCGCGGGCTGCGGTACGCGCTCCAGTGCCTCA TTGACTACAAGGGCTTCCGAATGACGGCACAGGTGAAACTGTCGACAATA ATACTTGGCATCACTGAAAAAATGTCATCGTATAGGCTTGAATAGACCTC AATAAGCCCAGTATGCAGCTGGTTTCTTCATCCCATCACTCACTGTAGTG ACTTCAACACATCCCCTTCGACTATGGAATTATCTCGAACGGGCGGTCTT TCTGTGAGGTTTTGTATATTTTGCTGAACTTCCAACATGATCTATGTGGT CCATATACACCATTTCTTTGTATGCATGTATGATTTTAATGTCTGCGCGT GTGAAATTCCTTTTCCACCGCCCGCTCTGGTGTACCTGGTGTGTTGTACC GCACTGTTTTGTGGAATTACCATGGTTTTGGATTTTTTTACTTTGGTTGA ACCACTGAAGGGCGTTGGTTTGTTTGAGTGAAGTGTCCGGGGTGGAGGGG GGGGGTCGCAATCGGAACCTCCACGGGGGCATCCTTTGTAGGGATCAGTG CACAGTTGCTTCAACTTGTTTCCCTCCGCAGATCCAGGCGTCCAGAGTAG ACGGGGCGAAAGTACTCGACGTTCTGGTATTTGTTGATGCTGTTGTTGCT GTTGTTGTTGTCAAGCCGAGCTTCGGGTGAGCTCGGAATCCCCCTGTTTA TGACGTTGGTGTTGTTGCTGTCGTTGTTGCTGTTGCTGCTGTTGTCAGGC CGTGCTTGTCGTGACTCGAAGTCCCTCTGTTGTTGTTGTTGTTGTTGTTG CTGCTGTTGTCAGGCCGTGCTTCCGGTTAGCTCGGAATCCCTTCGCTACG GTTCCTCTGACGGCGGCAAGACTGTCCACAACGAAGACGAAAGCCTGGCC AAGAAGCTGAAGGCCGCGGCAAAGAAGCTCAACCTTCGCACGCATAGGGT CAATGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14070:148..1154-

>mRNA_Ecto-sp13_S_contig14070.3180.1 ID=mRNA_Ecto-sp13_S_contig14070.3180.1|Name=mRNA_Ecto-sp13_S_contig14070.3180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14070:148..1154- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTCTCATTGTTGGTAGGAGCCGGGCACGACTTGAGAGGCGCGACACA
TTACCTGGCCACGCGCATTCGCGGGCTGCGGTACGCGCTCCAGTGCCTCA
TTGACTACAAGGGCTTCCGAATGACGGCACAGGCCGTGCTTCCGGTTAGC
TCGGAATCCCTTCGCTACGGTTCCTCTGACGGCGGCAAGACTGTCCACAA
CGAAGACGAAAGCCTGGCCAAGAAGCTGAAGGCCGCGGCAAAGAAGCTCA
ACCTTCGCACGCATAGGGTCAATGAT
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