mRNA_Ecto-sp13_S_contig1407.3178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3178.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1407.3178.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 2.360e-87
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 MVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVIDTPGFPDHDPKTTSKNFDALVEALKREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLSCSKLIVCRQAALSRRHKRTEEERR 405
            MVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVIDTPGFP HDPKTTSKNFDALV+AL+REGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHL CSKLIVCRQAALSRRHKRTEEERR
Sbjct:   37 MVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQAALSRRHKRTEEERR 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSX4_9PHAE2.360e-8797.04G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:6927..7334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-05_003490.1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.8395834-CDS-Ecto-sp13_S_contig1407:6926..73341681462751.8395834-CDS-Ecto-sp13_S_contig1407:6926..7334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 6927..7334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3178.1prot_Ecto-sp13_S_contig1407.3178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 6927..7334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3178.1

>prot_Ecto-sp13_S_contig1407.3178.1 ID=prot_Ecto-sp13_S_contig1407.3178.1|Name=mRNA_Ecto-sp13_S_contig1407.3178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVI
DTPGFPDHDPKTTSKNFDALVEALKREGSLSTLIFLVQQEEVSPTEFRDY
AVLLRQLNHLSCSKLIVCRQAALSRRHKRTEEERR*
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mRNA from alignment at Ecto-sp13_S_contig1407:6927..7334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3178.1 ID=mRNA_Ecto-sp13_S_contig1407.3178.1|Name=mRNA_Ecto-sp13_S_contig1407.3178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:6927..7334- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATCGGGATGCCCCGGGCCGGCAAATCGAACCTCGCCAACAAATT
GTTGAATCACCCCACGTGGGACGCCTTCGAGGAAGGAGATGGCACGTACG
GGTCCACGACCGAGACCCAAAGAGTAGAGTGGGCCGACCTGGTCGTGATT
GACACCCCCGGTTTTCCCGACCACGACCCCAAAACCACTTCGAAGAACTT
CGATGCCTTGGTCGAGGCGCTGAAAAGGGAAGGCAGCCTCAGCACCCTGA
TATTCTTGGTCCAGCAGGAAGAAGTGAGCCCGACGGAGTTCCGCGACTAC
GCCGTCCTCCTGAGGCAGCTTAACCACCTGTCCTGCTCCAAGTTGATAGT
GTGCCGGCAGGCGGCGCTAAGCAGGCGCCACAAGCGAACGGAGGAGGAGA
GAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:6927..7334-

>mRNA_Ecto-sp13_S_contig1407.3178.1 ID=mRNA_Ecto-sp13_S_contig1407.3178.1|Name=mRNA_Ecto-sp13_S_contig1407.3178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:6927..7334- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATCGGGATGCCCCGGGCCGGCAAATCGAACCTCGCCAACAAATT
GTTGAATCACCCCACGTGGGACGCCTTCGAGGAAGGAGATGGCACGTACG
GGTCCACGACCGAGACCCAAAGAGTAGAGTGGGCCGACCTGGTCGTGATT
GACACCCCCGGTTTTCCCGACCACGACCCCAAAACCACTTCGAAGAACTT
CGATGCCTTGGTCGAGGCGCTGAAAAGGGAAGGCAGCCTCAGCACCCTGA
TATTCTTGGTCCAGCAGGAAGAAGTGAGCCCGACGGAGTTCCGCGACTAC
GCCGTCCTCCTGAGGCAGCTTAACCACCTGTCCTGCTCCAAGTTGATAGT
GTGCCGGCAGGCGGCGCTAAGCAGGCGCCACAAGCGAACGGAGGAGGAGA
GAAGGTGA
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