mRNA_Ecto-sp13_S_contig14064.3171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14064.3171.1
Unique NamemRNA_Ecto-sp13_S_contig14064.3171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 525 bits (1353), Expect = 8.640e-184
Identity = 281/285 (98.60%), Postives = 283/285 (99.30%), Query Frame = 2 
Query:   98 MEFPRSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            ME  RSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDP+SGNVST+ATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG
Sbjct:    1 MELRRSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 285
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 517 bits (1332), Expect = 3.410e-182
Identity = 277/285 (97.19%), Postives = 281/285 (98.60%), Query Frame = 2 
Query:   98 MEFPRSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            ME  RSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXX DIAVSIRYA +TARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDP+SGNVST+ATGTWLLTEELYVEDGITL+VYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG
Sbjct:    1 MELRRSAALALVGLLAATSTXXXXXXXXXXXXXXXXXXXXDIAVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 285
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 464 bits (1193), Expect = 5.440e-162
Identity = 235/289 (81.31%), Postives = 247/289 (85.47%), Query Frame = 2 
Query:   98 MEFPRSAA----LALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            MEF RSA     LAL+GLLAAT                     SDIAVSIRYA +T RLYLESAD G TRGGCVTLGQIWE+RAGK PLYAVDPESGN S N TGTWLLTEELYVEDGITLKVYG+  GGDADELRLLST +T+INLRAHGGSLDFV TKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIE+SEIGYLG+ DSESYGLTWKVRGFC+DKSNP +FD+VNVYGN+YDSDIHHM FGLYTYGHQQGDWRRNKMHDNSGYG
Sbjct:    1 MEFRRSATSSFCLALLGLLAATMRAAAADTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESAD-GETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYG 288
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 3.340e-160
Identity = 232/290 (80.00%), Postives = 250/290 (86.21%), Query Frame = 2 
Query:   98 MEFPRSAA-----LALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            MEF R +A     LAL+GLLA+T+                    SDI VSIRYAGTT RLYLESAD G TRGGC TLGQIWESRAGK PLYAVDP+SG+VS   TGTWLLTEELYVEDGITLKVYG++ GGDADELRLLST+ET+INLRAHGGSLDFV TKVFSWDTSTNSPDEDETDGRSYISA+SEI+TDEDETCEGNAKNTMGEARMDIE+SEIGYLG+ DSESYGLTWKVRGFC+DKSNPE+FDDVNVYGN+YDSDIHH+ FGLYTYGHQQGDWRRNKMHDNSGYG
Sbjct:    1 MEFRRKSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESAD-GETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYG 289
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 5.550e-141
Identity = 206/272 (75.74%), Postives = 229/272 (84.19%), Query Frame = 2 
Query:   98 MEFPRSAA-----LALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYG 898
            MEF R +A     LAL+GLLA+T+                    SDI VSIRYAG T RLYLESAD G TRGGC TLGQ+WESRAGKGPLYAVDP+SG+VS   TGTWLLTEELYVEDGITLKVYG++ GGDADELRLLST++T+INLRA+GGSLDFV TKVFSWDTSTNSPD  ETDGRSYISA+SEI+TDEDE+CEG+AKNTMGEARMDIE+SEIGYLG+ DSESYGLTWKVRGFC+DKSNPE+FDDVNVYGN+YDSDIHH+ FGLYT G
Sbjct:    1 MEFRRRSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGNTKRLYLESAD-GETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTDG 271
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 2.680e-135
Identity = 190/246 (77.24%), Postives = 220/246 (89.43%), Query Frame = 2 
Query:  215 SDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            S IAVS+RY   +ARLY+ESA NG TRGGCVTL QIWE +    PLYAVDP+SG+VS +ATGTWLLTEE+YVEDGITL+V+G  AGGDADELRLLST++TFI+LRA+GGSLDF+STKVF+WDTS N+PD+DE+DGRSYISA+SE+ITD+ +TC G AKN MGEARMDIE+SE+ YLGY  +E+YGLTWKVRGFC DK NPE+FDDVNVYGN+YDSDIHH NFG+YTYGHQQGDWRRNKMHDNSGYG
Sbjct:   12 SSIAVSVRYNAESARLYIESA-NGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYG 256
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BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 4.370e-135
Identity = 191/244 (78.28%), Postives = 217/244 (88.93%), Query Frame = 2 
Query:  221 IAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            IAVSIRY+    RLYLESAD+  TRGGCVTL QIWE + G+ PLYAVD +SG++S +ATGTWLLTEEL+VEDGITLKV+G+ AGGDADELRLLST++TFINLRAHGGSLDF+STKVF+WDTS N PD DE DGRSY+SA+SE+ITD+ +TC G AKN MGEARMDIE SE+GYLGY  SESYGLTWKVRGFC DKSN ++F+DVNVYGN+YDSDIHH NFG+YTYGHQQGDWRRNKMHDNSGYG
Sbjct:   40 IAVSIRYSSVYERLYLESADS-KTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYG 282
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 3.420e-122
Identity = 180/246 (73.17%), Postives = 207/246 (84.15%), Query Frame = 2 
Query:  215 SDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            S   VSIRY+ ++ RLYLESAD G TRGGCVTL +IW+   G  PLYAV P SG+VS++ATGTWLLTE+LYVEDGITL+V+G+ AGG+A+ELRLLST++ FINLRAHGGSLDFVSTKVF+WDTS N    D +  RSYISA+SEIITD  E C+G AK TMGEARMDIE SE+ YLGY  SESYGLTWKVRGFC+D SNPEVFD+VNVYGN+YDSDIHH +FG+YTYGH+QGDWRRNKMH N  YG
Sbjct:   41 SSTKVSIRYSASSKRLYLESAD-GKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYG 285
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 1.050e-120
Identity = 184/256 (71.88%), Postives = 207/256 (80.86%), Query Frame = 2 
Query:  224 AVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLST-------NETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            AVSIRY+ TT RLYLE+   G  RGGCVT+ QIWE+R G      K PLYAVDP SG  S   TGTWLL E+LYVEDGITLKV+G+ +GG ADELRL ST       N T+INLRAHGGSLDF  TKVF WDT+ NS D DETDGRSYISA+SEI+ D  +TCEGNAKNTMGEARMDI +SE+GY+G+ DSESYGLTWKVRGFC+DKSNPEVFD VNVYGN+YDS++HHMNF +YTYGHQQGDWRRN +H NSGYG
Sbjct:  120 AVSIRYSATTGRLYLEAGVEGE-RGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYG 374
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 359 bits (921), Expect = 1.860e-118
Identity = 177/246 (71.95%), Postives = 199/246 (80.89%), Query Frame = 2 
Query:  215 SDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG 952
            S   VSIRY+ T+ RLYLESAD G TRGGCVTL  IW    G  PLYAV P SG+VS++ TGTWLLTE LYVEDGITL+V+G  AGG ADELRLLST++ FINLRAHGGSLDFVSTKVF+WDTS N    D++ GRSYISA+SE+ITD  + C+G AK  MGEARMDIE SE+ YLGY+ SESYGLTWKVRG C D SN EVFD VNVYGN+YDSDIHH  FG+YTYGH+QGDWRRNKMH N+ YG
Sbjct:   38 SSTKVSIRYSKTSKRLYLESAD-GNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYG 282
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14064.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G339_ECTSI8.640e-18498.60Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI3.410e-18297.19Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE5.440e-16281.31MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI3.340e-16080.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LHA2_ECTSI5.550e-14175.74Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
Q7XAJ8_9PHAE2.680e-13577.24Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE4.370e-13578.28Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK2_9PHAE3.420e-12273.17Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
D8LD45_ECTSI1.050e-12071.88Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA1.860e-11871.95Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14064contigEcto-sp13_S_contig14064:2189..4240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score230.7
Seed ortholog evalue8.4e-58
Seed eggNOG ortholog2880.D8LC73
Model size952
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Cds size855
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14064.3171.1prot_Ecto-sp13_S_contig14064.3171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14064 2286..4240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.4232144-UTR-Ecto-sp13_S_contig14064:2188..22851681462751.4232144-UTR-Ecto-sp13_S_contig14064:2188..2285Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14064 2189..2285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.4374754-CDS-Ecto-sp13_S_contig14064:2285..26391681462751.4374754-CDS-Ecto-sp13_S_contig14064:2285..2639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14064 2286..2639 +
1681462751.452448-CDS-Ecto-sp13_S_contig14064:2923..30371681462751.452448-CDS-Ecto-sp13_S_contig14064:2923..3037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14064 2924..3037 +
1681462751.4670067-CDS-Ecto-sp13_S_contig14064:3354..35701681462751.4670067-CDS-Ecto-sp13_S_contig14064:3354..3570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14064 3355..3570 +
1681462751.4753845-CDS-Ecto-sp13_S_contig14064:3850..39651681462751.4753845-CDS-Ecto-sp13_S_contig14064:3850..3965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14064 3851..3965 +
1681462751.4856465-CDS-Ecto-sp13_S_contig14064:4184..42401681462751.4856465-CDS-Ecto-sp13_S_contig14064:4184..4240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14064 4185..4240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14064.3171.1

>prot_Ecto-sp13_S_contig14064.3171.1 ID=prot_Ecto-sp13_S_contig14064.3171.1|Name=mRNA_Ecto-sp13_S_contig14064.3171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MEFPRSAALALVGLLAATSTAAAADTPSPNEPIPKPDCDSDIAVSIRYAG
TTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPESGNVSTNAT
GTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSL
DFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTM
GEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGN
VYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYG
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mRNA from alignment at Ecto-sp13_S_contig14064:2189..4240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14064.3171.1 ID=mRNA_Ecto-sp13_S_contig14064.3171.1|Name=mRNA_Ecto-sp13_S_contig14064.3171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14064:2189..4240+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAGAAAGAACGCTGCTTCGGCCAAGCAAGCAGTAACTTGACGGTCTCC
TCGCCACGTTCGGGAAACAGCAGCTTTGTTCACGTGGCCGACGCAACATG
GAGTTCCCACGAAGCGCAGCGTTAGCCCTGGTCGGCCTTCTCGCCGCCAC
CAGCACCGCGGCAGCTGCGGACACCCCATCCCCCAACGAGCCCATCCCCA
AGCCCGACTGCGACTCCGACATCGCGGTCTCGATCCGGTACGCCGGCACC
ACGGCGCGCCTGTATCTCGAGTCGGCAGACAACGGCACCACCCGCGGCGG
CTGCGTGACCCTCGGACAGATCTGGGAGAGCCGGGCCGGCAAGGGGCCGC
TGTACGCGGTAGACCCTGAGTCGGGGAACGTGAGCACCAACGCGACCGGC
ACGTGGCTTCTCACGGAGGAGCTGTATGTGGAGGACGGCATCACGCTCAA
GGTTCGTGTCGAGACTGATGAGCAATGTTGACAAACATGGTAGATGTCGA
TGTTCGGCTGCACGTTGTTTTGGGTCCATGACGACGCCTATTCCCTCTGG
CCCGACTCCCTCTGGTGCCTTGAGCATTTGTCGTATGGAACTTGTCGCGT
AGGCGCACAATCCCAGCATGCGCAGCGTATTGTACGGCGGCAATCAGCAC
CCCTTGGATGGCCGGTACGGGATGATGCCTGTCTGATGTCGTCGTCTCGA
TATTGCTTTGACGCCTGTTGCTCCCGTCTCAACAGGTATACGGGTCGGAG
GCCGGAGGAGACGCTGACGAACTCCGACTGCTGAGCACAAACGAAACGTT
CATCAACCTACGAGCGCATGGCGGGAGCCTGGACTTCGTCAGCACGAAGG
TAGACATCAGCCCGCGCGGGGCGTTGTCGCCCTCTATTGCTCCTTTTCCG
TGGGAGCTGATTGGTCCACTCGGGGTGTGTCTTTTGGGTCACGGTCAGCG
GTTTCCGGAACCGTTGCCAGAACCATTCCGCTGTTTTCCGTCGTGCATTC
GCCCGTCTCTTGTTCTTGCGCTCTCTGTTGGTGCTCTGCCCGTTCCCCCT
GTTCTCTCCCCGCGCTACGATCCCGTTGCATGCCAACGTGTCATCCGTTT
CGCGAATAGTCACAGTTTTCCCCCGCGTCCCCCTCTTCCCCCTTGCCCAA
TGATGCTGAATTGAAGGTCTTCTCGTGGGACACCAGCACCAACTCGCCGG
ACGAAGACGAAACCGACGGCCGATCGTACATCAGCGCCATCTCGGAGATC
ATCACCGACGAGGACGAGACTTGCGAGGGAAATGCCAAGAACACCATGGG
GGAGGCCCGCATGGACATCGAGAGCAGCGAGATCGGCTACCTCGGGTACT
GGGACAGCGAGAGCTACGGCCTCACTTGGAAGGTGCGTAATGATTGGGTT
TGGGTCATTTTCGATTCTACATGGTGGCGGCTGGTGTTGCTTGTCGTGTC
CTATTGCGGCGAACGATGTATTGTGGTAGGTAAGTACGTGAGGACACGTG
TTTGGGGGCTAGCGACGGGCGTGAAGAGCTCTCAACCAAGCCGTGTGAAC
ACACGCATCGTGCGTCGTTCGCGGCGCGTACCAGTAGAATCGATTGGCTG
TCTGTGGTGCACCACTTTTAACCTCAGCCGTTGGTTGTTGCAACGCGACT
GAAACGCCCCAGGTTCGCGGGTTCTGCGAGGACAAGTCTAACCCGGAGGT
GTTCGACGACGTGAACGTGTACGGCAACGTGTACGACAGCGACATCCACC
ACATGAACTTCGGCCTCTACACTTACGGTACGGCTCGGGGCGTTGATTTG
GATCTGGAGTGCGTGGGGGTTGGGTGCTGCCGACAGCGTATCCGTGGGGT
TTCCTGTGCAGTGGTTTCATGGTTTCGATATTCCGCAACAACTGCGGTAG
TCGTGACTTCTTCTGTCTTTCGGGTCTAGTGTAATGTAGTCTTGTGACCC
CCCACCGATCCACGCCCTTCTCCCTGTCCGTCACGCCATCCGACAGGCCA
CCAGCAGGGAGACTGGAGGAGGAACAAGATGCACGACAACTCCGGATACG
GT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14064:2189..4240+

>mRNA_Ecto-sp13_S_contig14064.3171.1 ID=mRNA_Ecto-sp13_S_contig14064.3171.1|Name=mRNA_Ecto-sp13_S_contig14064.3171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14064:2189..4240+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTTCCCACGAAGCGCAGCGTTAGCCCTGGTCGGCCTTCTCGCCGC
CACCAGCACCGCGGCAGCTGCGGACACCCCATCCCCCAACGAGCCCATCC
CCAAGCCCGACTGCGACTCCGACATCGCGGTCTCGATCCGGTACGCCGGC
ACCACGGCGCGCCTGTATCTCGAGTCGGCAGACAACGGCACCACCCGCGG
CGGCTGCGTGACCCTCGGACAGATCTGGGAGAGCCGGGCCGGCAAGGGGC
CGCTGTACGCGGTAGACCCTGAGTCGGGGAACGTGAGCACCAACGCGACC
GGCACGTGGCTTCTCACGGAGGAGCTGTATGTGGAGGACGGCATCACGCT
CAAGGTATACGGGTCGGAGGCCGGAGGAGACGCTGACGAACTCCGACTGC
TGAGCACAAACGAAACGTTCATCAACCTACGAGCGCATGGCGGGAGCCTG
GACTTCGTCAGCACGAAGGTCTTCTCGTGGGACACCAGCACCAACTCGCC
GGACGAAGACGAAACCGACGGCCGATCGTACATCAGCGCCATCTCGGAGA
TCATCACCGACGAGGACGAGACTTGCGAGGGAAATGCCAAGAACACCATG
GGGGAGGCCCGCATGGACATCGAGAGCAGCGAGATCGGCTACCTCGGGTA
CTGGGACAGCGAGAGCTACGGCCTCACTTGGAAGGTTCGCGGGTTCTGCG
AGGACAAGTCTAACCCGGAGGTGTTCGACGACGTGAACGTGTACGGCAAC
GTGTACGACAGCGACATCCACCACATGAACTTCGGCCTCTACACTTACGG
CCACCAGCAGGGAGACTGGAGGAGGAACAAGATGCACGACAACTCCGGAT
ACGGT
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