mRNA_Ecto-sp13_S_contig14063.3170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14063.3170.1
Unique NamemRNA_Ecto-sp13_S_contig14063.3170.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 2.940e-77
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 1
Query:    1 VMLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            +ML TDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSR+LCGLAR IMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP
Sbjct:  289 IMLSTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRVLCGLARLIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 412          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.240e-65
Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 VMLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            +M  T ESASFF AV LSGMG GVIDTFLFIRLEELGGS +LCGLAR IMC+AEVPFFYLSGPLIRR G RGVIAL Q+AYLTRF+YYSVLREPWWVLP+EVLHGLTFAAMWAATT+YAH IAP
Sbjct:  340 IMTNTGESASFFMAVGLSGMGSGVIDTFLFIRLEELGGSHVLCGLARLIMCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSVLREPWWVLPAEVLHGLTFAAMWAATTEYAHGIAP 463          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.600e-65
Identity = 104/124 (83.87%), Postives = 113/124 (91.13%), Query Frame = 1
Query:    1 VMLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            +M+ T ESASFF AV LSGMG GVIDTFLFIRLEELGGS +LCGLAR IMC+AEVPFFYLSGPLIRR G RGVIAL Q+AYLTRF+YYSVLR+PWWVLP+EVLHGLTFAAMWAATT+YAH IAP
Sbjct:  285 IMMYTGESASFFMAVGLSGMGAGVIDTFLFIRLEELGGSHVLCGLARLIMCIAEVPFFYLSGPLIRRVGVRGVIALTQVAYLTRFIYYSVLRKPWWVLPAEVLHGLTFAAMWAATTEYAHGIAP 408          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A0A6H5JI17_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI17_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.220e-52
Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 1
Query:    1 VMLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            +M    ++ SFF  V+LSGM +GVIDTFLFI L+ELGGS +L GLA  +MC  EVPFFY+SG  IR+ G R V+AL+Q+ Y+ R VYYSVL +PWWVLP+E+LHGLTFAAMWAATTDYAH IAP
Sbjct:  177 IMFSAPQNFSFFLGVMLSGMAKGVIDTFLFIWLDELGGSHVLLGLAGVVMCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSVLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAP 300          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 3.850e-52
Identity = 83/124 (66.94%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 VMLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            +M  T ++ SFF  V+LSGM +GVIDTFLFI L+ELGGS +L GLA  +MC  EVPFFY+SG  IR+ G R V+AL+Q+ Y+ R VYYSVL +PWWVLP+E+LHGLTFAAMWAATTDYAH IAP
Sbjct:  236 IMFSTPQNFSFFLGVMLSGMAKGVIDTFLFIWLDELGGSHVLLGLAGVVMCCGEVPFFYVSGSFIRKIGPRNVVALSQIGYIVRLVYYSVLWDPWWVLPAELLHGLTFAAMWAATTDYAHGIAP 359          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: D7G0X7_ECTSI (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X7_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.240e-37
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:  148 MCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            MC++EVPFFY+SGPLIR+ G R V+AL+Q+ Y+ R VYYSVL +PWWVLP+E+LHGLTFAAMWAATTDYAH IAP
Sbjct:    1 MCLSEVPFFYVSGPLIRKIGPRNVVALSQIGYIVRLVYYSVLSDPWWVLPAELLHGLTFAAMWAATTDYAHGIAP 75          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A0A7S0ZL95_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL95_9RHOD)

HSP 1 Score: 126 bits (316), Expect = 5.680e-32
Identity = 55/114 (48.25%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   31 FFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            FF  +++SG+G G+I+TFLF+RL ELG +  + G++R +MC+ E+PFF+ +  L+ R G  GV+ + Q AY  RF +YSVL+ PW V+  EVLHG+T+ A+W  ++ +AHQIAP
Sbjct:  262 FFLILLISGLGNGMIETFLFVRLNELGATSRVLGISRLLMCLGELPFFHYNEQLVSRFGVFGVLGIVQCAYCVRFFWYSVLQNPWNVVYVEVLHGITYGALWGTSSVFAHQIAP 375          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A9VAW9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VAW9_MONBE)

HSP 1 Score: 121 bits (303), Expect = 5.390e-30
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   31 FFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            FF  + LSG G G+ID +LFI +EELGG++ + G+AR +MC AEVP F+ SG +  R G  G + +   A++ RF+ Y+ +  PW V+ SE LHGLTFA MW A T  A  IAP
Sbjct:  262 FFLTIALSGFGAGIIDNYLFIYIEELGGTKTIQGMARFVMCAAEVPMFWYSGAIFDRLGTTGCLVVTFCAFIVRFLIYAFMSNPWLVVASEPLHGLTFAVMWTAATRQAFAIAP 375          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: F2U1L1_SALR5 (MFS domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U1L1_SALR5)

HSP 1 Score: 121 bits (304), Expect = 1.350e-29
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   31 FFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            FF  +V++G G GVI+TFLFI +++LGGS  + G  R + CM+EVP F+ SG ++ + G  G + L  + Y+ RF  YS++R PW V+ SE LHG+TFA MWA +T YA  IAP
Sbjct:  514 FFFIIVVAGFGVGVIETFLFIFIQQLGGSETVQGFGRFVTCMSEVPLFWFSGYIMNKLGVNGCLMLTFVCYVLRFTIYSLMRSPWLVVASEPLHGVTFAIMWATSTKYAADIAP 627          
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Match: A0A8K0EMS7_BRALA (MFSD6 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EMS7_BRALA)

HSP 1 Score: 117 bits (294), Expect = 1.530e-28
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   31 FFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMCMAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSEVLHGLTFAAMWAATTDYAHQIAP 372
            F + + + G   GV++TF F  L++LGGS+LL GL   + C+AEVPFF+ SG LI +   +GV +L+   +  RF++ S+L  PWW +P EVLHG T+ AM+AA+T YA QIAP
Sbjct:  296 FLSVLFVLGSSFGVLETFAFWFLKDLGGSQLLLGLCLTVNCIAEVPFFFFSGKLIEKISHKGVFSLSLFCFALRFLFLSLLVNPWWAIPVEVLHGTTYGAMFAASTTYASQIAP 409          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14063.3170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEM5_9PHAE2.940e-7796.77MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5K6H4_9PHAE2.240e-6584.68MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G3W1_ECTSI4.600e-6583.87MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JI17_9PHAE3.220e-5266.13MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G4M5_ECTSI3.850e-5266.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0X7_ECTSI7.240e-3774.67MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S0ZL95_9RHOD5.680e-3248.25Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A9VAW9_MONBE5.390e-3049.12Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U1L1_SALR51.350e-2949.12MFS domain-containing protein n=1 Tax=Salpingoeca ... [more]
A0A8K0EMS7_BRALA1.530e-2848.25MFSD6 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14063contigEcto-sp13_S_contig14063:292..1184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score213.8
Seed ortholog evalue4.6e-53
Seed eggNOG ortholog2880.D7G3W1
Model size372
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-23_001910.1
EC3.6.4.12
Cds size369
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.3431444-UTR-Ecto-sp13_S_contig14063:291..2941681462751.3431444-UTR-Ecto-sp13_S_contig14063:291..294Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14063 292..294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.3532462-CDS-Ecto-sp13_S_contig14063:294..3861681462751.3532462-CDS-Ecto-sp13_S_contig14063:294..386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14063 295..386 +
1681462751.3647559-CDS-Ecto-sp13_S_contig14063:723..8951681462751.3647559-CDS-Ecto-sp13_S_contig14063:723..895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14063 724..895 +
1681462751.3793416-CDS-Ecto-sp13_S_contig14063:1079..11841681462751.3793416-CDS-Ecto-sp13_S_contig14063:1079..1184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14063 1080..1184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14063.3170.1prot_Ecto-sp13_S_contig14063.3170.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14063 295..1184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14063.3170.1

>prot_Ecto-sp13_S_contig14063.3170.1 ID=prot_Ecto-sp13_S_contig14063.3170.1|Name=mRNA_Ecto-sp13_S_contig14063.3170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MLGTDESASFFTAVVLSGMGRGVIDTFLFIRLEELGGSRLLCGLARPIMC
MAEVPFFYLSGPLIRRAGARGVIALAQLAYLTRFVYYSVLREPWWVLPSE
VLHGLTFAAMWAATTDYAHQIAP
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mRNA from alignment at Ecto-sp13_S_contig14063:292..1184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14063.3170.1 ID=mRNA_Ecto-sp13_S_contig14063.3170.1|Name=mRNA_Ecto-sp13_S_contig14063.3170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14063:292..1184+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCATGCTCGGTACGGACGAGAGCGCGTCGTTCTTCACGGCGGTGGTGTT GAGCGGCATGGGCAGGGGTGTCATCGACACGTTTCTGTTCATCAGGTGAC TTGATGGTTGAAGCTTTGGATGCAGGGCACAGCAGTTTGCGTGATGAATT TTAGCCGGCGCATTCAGGAGGGGTCAAGCAGGTTTTATTGGTTTTGATCC GTGAAAGAAAATCGAAGTGGGTCCGTTTGCCATTTTCAGTTCCCAGCCGT TGTGGTTTGGTTCGTCCTGCAACCCCAATATCATCTCTAGGCCCCTCCCA ACAACCTTGCCTTAAGCAGTGCTCGTCGTCCACCCTATAAACCGTGAATG CGTGCTTCGTCGCGGTACTACGCGTGGAATGATTTGCTCGTATGTTGCTT TTCCCTTGTTCCTTCATGCTTTTCTCCTCAAGGCTGGAAGAGCTGGGCGG CTCCCGCTTGCTGTGCGGGTTGGCTCGTCCCATCATGTGCATGGCGGAGG TGCCCTTCTTCTACCTGTCGGGGCCGCTCATTCGGCGGGCCGGGGCGAGG GGCGTGATTGCCCTGGCCCAGCTGGCCTACCTCACTCGCTTCGTCTACTA CTCGGTGCGTTTTTAACGTGTGCGTGTCTGTTTGCGCGTCTGTCGAACTT CGGAATACGCCTTTTTTTTATTGAGACTGTTGGGTGTCTCCTCGACATCG GGTCAAGGGTAGGGCATGCGTGGCGTCCGTGCGGCATTATTTTTTGAAGG AGCCAAGCGCGTGCAGTCGCTCGTGTTGTGGTGTGCAGGTTCTTCGGGAG CCGTGGTGGGTGCTGCCTTCGGAGGTGTTGCACGGCCTCACCTTCGCAGC CATGTGGGCAGCTACCACCGACTACGCGCACCAAATCGCTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14063:292..1184+

>mRNA_Ecto-sp13_S_contig14063.3170.1 ID=mRNA_Ecto-sp13_S_contig14063.3170.1|Name=mRNA_Ecto-sp13_S_contig14063.3170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14063:292..1184+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGTACGGACGAGAGCGCGTCGTTCTTCACGGCGGTGGTGTTGAG
CGGCATGGGCAGGGGTGTCATCGACACGTTTCTGTTCATCAGGCTGGAAG
AGCTGGGCGGCTCCCGCTTGCTGTGCGGGTTGGCTCGTCCCATCATGTGC
ATGGCGGAGGTGCCCTTCTTCTACCTGTCGGGGCCGCTCATTCGGCGGGC
CGGGGCGAGGGGCGTGATTGCCCTGGCCCAGCTGGCCTACCTCACTCGCT
TCGTCTACTACTCGGTTCTTCGGGAGCCGTGGTGGGTGCTGCCTTCGGAG
GTGTTGCACGGCCTCACCTTCGCAGCCATGTGGGCAGCTACCACCGACTA
CGCGCACCAAATCGCTCCA
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