prot_Ecto-sp13_S_contig14061.3168.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14061.3168.1
Unique Nameprot_Ecto-sp13_S_contig14061.3168.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length165
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Match: A0A6H5JMX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.670e-44
Identity = 152/165 (92.12%), Postives = 154/165 (93.33%), Query Frame = 0 
Query:    1 GSIPAGLGELDALEHLHLTNNELHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSIDGNEGLTPADSRA 165
            GSIPAGLGEL ALEHL          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFS+DGNEG+TPADSRA
Sbjct:   69 GSIPAGLGELGALEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEGVTPADSRA 233
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BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Match: D8LSN5_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.260e-41
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0 
Query:   90 LSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSIDGNEGLTPADSRA 165
            LSDNK+LLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFS+DGNE +TPADSRA
Sbjct:  120 LSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEAVTPADSRA 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMX8_9PHAE1.670e-4492.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN5_ECTSI2.260e-4194.74Hypothetical leucine rich repeat protein (Partial)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..126
e-value: 1.3E-29
score: 104.8
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 2..102
coord: 32..109
NoneNo IPR availablePANTHERPTHR27000:SF535LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR-RELATEDcoord: 2..102
coord: 32..109
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14061contigEcto-sp13_S_contig14061:567..4525 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14061.3168.1mRNA_Ecto-sp13_S_contig14061.3168.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14061 567..4525 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14061.3168.1 ID=prot_Ecto-sp13_S_contig14061.3168.1|Name=mRNA_Ecto-sp13_S_contig14061.3168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
GSIPAGLGELDALEHLHLTNNELHGAIPPELGRLFSLTDLRLYCNHLSGS
IPPELGNLHALKKLVVYSNDLSGTVPPELEGLRALEELLLSDNKHLLGDI
PPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIF
SIDGNEGLTPADSRA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf