mRNA_Ecto-sp13_S_contig14061.3168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14061.3168.1
Unique NamemRNA_Ecto-sp13_S_contig14061.3168.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Match: A0A6H5JMX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.670e-44
Identity = 152/165 (92.12%), Postives = 154/165 (93.33%), Query Frame = 1 
Query:    1 GSIPAGLGELDALEHLHLTNNELHGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSIDGNEGLTPADSRA 495
            GSIPAGLGEL ALEHL          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFS+DGNEG+TPADSRA
Sbjct:   69 GSIPAGLGELGALEHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEGVTPADSRA 233
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BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Match: D8LSN5_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.260e-41
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:  268 LSDNKHLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSIDGNEGLTPADSRA 495
            LSDNK+LLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFS+DGNE +TPADSRA
Sbjct:  120 LSDNKYLLGDIPPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIFSVDGNEAVTPADSRA 195
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14061.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMX8_9PHAE1.670e-4492.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN5_ECTSI2.260e-4194.74Hypothetical leucine rich repeat protein (Partial)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14061contigEcto-sp13_S_contig14061:567..4525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons6
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14061.3168.1prot_Ecto-sp13_S_contig14061.3168.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14061 567..4525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.1547387-CDS-Ecto-sp13_S_contig14061:566..6391681462751.1547387-CDS-Ecto-sp13_S_contig14061:566..639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 567..639 +
1681462751.1679347-CDS-Ecto-sp13_S_contig14061:1625..16971681462751.1679347-CDS-Ecto-sp13_S_contig14061:1625..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 1626..1697 +
1681462751.1820564-CDS-Ecto-sp13_S_contig14061:2633..27051681462751.1820564-CDS-Ecto-sp13_S_contig14061:2633..2705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 2634..2705 +
1681462751.1919286-CDS-Ecto-sp13_S_contig14061:3018..30931681462751.1919286-CDS-Ecto-sp13_S_contig14061:3018..3093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 3019..3093 +
1681462751.2050755-CDS-Ecto-sp13_S_contig14061:3748..38261681462751.2050755-CDS-Ecto-sp13_S_contig14061:3748..3826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 3749..3826 +
1681462751.2159853-CDS-Ecto-sp13_S_contig14061:4400..45251681462751.2159853-CDS-Ecto-sp13_S_contig14061:4400..4525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14061 4401..4525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14061.3168.1

>prot_Ecto-sp13_S_contig14061.3168.1 ID=prot_Ecto-sp13_S_contig14061.3168.1|Name=mRNA_Ecto-sp13_S_contig14061.3168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
GSIPAGLGELDALEHLHLTNNELHGAIPPELGRLFSLTDLRLYCNHLSGS
IPPELGNLHALKKLVVYSNDLSGTVPPELEGLRALEELLLSDNKHLLGDI
PPGLDRNLALNRHTKQLPAGVLAGMFSPIGSSRWEDATLEDDSKTIFSIF
SIDGNEGLTPADSRA
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mRNA from alignment at Ecto-sp13_S_contig14061:567..4525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14061.3168.1 ID=mRNA_Ecto-sp13_S_contig14061.3168.1|Name=mRNA_Ecto-sp13_S_contig14061.3168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3959bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14061:567..4525+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCTATCCCAGCGGGCCTGGGTGAGCTAGACGCCCTGGAGCATTTGCA
CCTGACCAACAACGAACTCCACGGTAAGGGCAATCAACGCCGTTGTGAGT
GACGTAGCCTCAACACCTCGAATCGCTTTCTCTCTCGGGACTTATTCCTT
GCGGATGACGTACCTGCGCGGCTTTTCCAGATGGAATTGTCACACGCTGG
TTTGGGTTGTTGCAAACACCTTGTACCTTCTTGGCGTGTGTGTTTCCACG
TGTACACAAAAGGTTTGGCGGGTGCATTGCTGCGATTCTACCGTACGATT
GTGACGCGCGCGGTTTGAACCTTTTGGACCGCATAGAGCGAACCCTGGTT
TTTGTAGCAGCCTACCTGCATCCACGCTCCGTGGGCTCCAACTCCTTTCA
TCAACGAAAAAATACTTCGGGACGAGATTACCCACAGCGTAACTACGTCT
TCTTTTCTGTACCTAAACCGAACAGGACAAGAAGGGTGGCCTTGTGTCCA
CATCAAGTGTTATTTTCCTTACGCCGCAAGCTCAACGTGTAGTAGCGGTC
TTGCATCCACACGAGTCTTGACCGGTTGTTCATCACGTAGCGCTTTCTTC
AATTGGCCACTTTGTGAGCAAAGACGCGGTACTTCAGAATTGACGGGCAA
TGTATAGTATATGTCGGTGCCTCATGCGGCTTCGGCGTCAGCTCCGTAGA
GCGACACGTACTTGGTGACCTCACGAACCGTGGGGCGCCTGCAGTTTCGT
CAGCGATCTCGCGAAAACGGGCCACCCCACGCACACACATTAATTGAGAG
GTAGTGGACCCTTTGCCCTCACACGCTGCGATTCGCAGGTCGGTGTGCGT
ATTCTCTCAGCGACCCAGCGTACAAGACAGCAATATTTTCGCAGCATGGC
GGCGTTTTACCCATAGCAGATCGTGTGGAAAATATGTGCCATCGAGGCCG
GCTGACCGCCGGCCACCACAACGCAAGACTCATACGAAGGCATATGCTCT
TTCCGTTTTCCGTGCTCGTCTCCCGGTAATTTGCTGGACCTCCGTTCTCC
CCCCCTCAGGAGCCATCCCGCCCGAGCTTGGGCGACTCTTCTCCCTCACG
GATCTTCGTCTGTACTGCAACCATCTCTCCGGTATGATGGCTGAGCTGCC
TCGTGGGTGGACATATGTGGAATACACCCATTTTCGGTTTTTGTTTTCTG
TTGTGTGTTGAGAGGTGCCGTTGCTTGCGTCCACCATGAAGACGATGCTG
TTGGGAATAAGACCAACTCCTCGGAAATATGCCTCCCCCTGTAAGTTGGT
CGGTTCAACCTGTTAACCTGGCCAATGCGCCAATGCGAAAGCAACACGGG
TCGACGCGCAGCAAGAGGCACAGAAAAGGGAAAGGGTAGCGAATTTACAC
CTTGACAACGACACCGACTGAATATGTAGTACCAATACGAGCGTTACAGG
CGTGCGAACAGTTTTTCGTAAAGAGCGGTCACTGAAGGAATGTTCACTAT
CGAGTGAGTTGTGTGAGCATCTTGCAGACACCTTGGTAGGGCGTGGATTT
TCAAATTCGGCGCTTATTCGACCATTCATGTTCTTCATCACCGCGATGGT
AAAATTTCGATGCACGTACAATAGCTAGCTTCGTCTAAGCCCTCTCTTCA
GTTGAAACAGTCGTTCGGCCACTGCAGTTCACATTTCTACTTGGGATGGA
TTCACCTTTGAACCTGCTTGTCGGCAGCTTGGTTTTTGACATTTGTTCCA
GATACACCGCAAATATCGAACACACGAACATCTGCGACGGACGGTTGGCT
ATATTGTCAACGAATGGTTGCGAACAACTTTTCAAGCGCTTTCGCAAGGT
TTTCGAGTGATACTGCGTCTTGATCTTCGAGCGTTTCGGCTGTGTCTCAA
GAAAGGAAGCTTTTGGCTTATGGCGCGCGCCCCAGCGTATATATTGAGAA
CTACAGTAGGAGGACCTCGGCCCATGGATCGAGAATATCGACTTTTTTGG
TTTGATACCAACCCCACCACCACCAACAAGAAAGCGCACGCATACGTAAT
CTTTTTTTCGTTTTCAGGCAGCATCCCGCCGGAGCTAGGAAATCTCCATG
CTCTCAAGAAGCTTGTGGTCTACAGCAACGACCTCTCTGGTGAGCCTTCC
AACCCCCCGCCCCTGTTTCCGACGTTGATGGCCTTCCTCATTTCGTCCAA
ATGACGTAGACCTTGCAGGCGTACCAGTATCAGATTGTGCAGATATTGGG
AGATGTTCATCCCCCCCCCGTTTCGACCACAATGCATGCGCCGCAAAAAG
CTAAGTGCCCATTATTCTCTACGAACCACACCGAACGATTACCGCTACTC
GAGAGTTGCGACCCCCCAACAAGCGTTCCAACCATTGCCTGCCTCACTCG
AGGCGCACGGCTCACTCTCACTCTTGCGTATGGACGCCTGACGCAACTTA
AGGGACGGTTCCGCCGGAGCTGGAGGGGCTACGGGCTCTGGAGGAGCTCC
TTTTGTCGGACAACAAGCACCTCCTAGGTGCGTTAACCTTTGGTTCACTT
TTGTCTGCCTTTGGTGGACTTTTGTCAGGCTGTGGTTGACACTCGTTAGC
CTCTGGTTGACTTTCGCTAGCCTGCGGGTGACTTTCGTTAGCCTGTGGTT
GACTTTCGTCAGCCTGTGGGTGACTCTCGTAGCCTCTGGTTGACTTCCGT
ATGACACAAGGGGTTGTTTGGACTCTCTCCCGGGGGGACCCTGATCGGGG
TATATGTGTCGGCTCGGGTTCTTGTCGAGTCGTCGTACCGTTCGTCCTGC
ACAAGTACGGCATGCTTGCTGCTCGGGGATTGTCCACGTGGGACCTCCGA
ACGAGCACGGAGAGCGTGCGGGTTGGATTGCCCCCTCCTGCCCTGCGTGC
CTCGAACTGGAACTGGATGTGTGGTGCTGGCGGTTTCGAGAGTTGTGGCC
GCTTTTCTCGCTCTACATGTAGGGGTGTGAAGGACAAACCGCAACACTCG
CCTTCTTTTTTCTGTTCCGGTGGTCATGTCGTGGTACGCAGCAGATCTTC
CGTCGGTGTACACCCGAAACTCCTCACAACCAGCGCTTTTCGCCTTCTTC
TACTAGACCCATGACTCCACCGCATTACTCGAAGTTGATCAGTCAATCGA
TCGATCTCCACGCACGACCACCGCCCCCGCAGGCGACATCCCGCCGGGGC
TGGACCGAAACCTGGCTCTCAACAGGCACACAAAGCAGCTCCCCGCCGGC
GTACTCGCGGGTGAGGCGCGGCGCGCGTGGGATTGTGATGCCGAGACGGA
CCGCCGGTGCCGTTGACGCCGTCTTGCTTCTTGCGCGTGTTGCTCGCCCC
TTTCCCTCCGTCTCTTTCGTGTGCGTATCTCGCTGTGACTCTAGACCAAT
GGCCCCAACGATCGTGCACAGCAGTCGCACTGCTCCGAAGCTCCAAGTGC
CCCCCCCCCTCCTCAAGAAATAGCCGAGAGAGGATCGCTGATTGCCATCT
ATATCTGTCGCGGTACGGCACTTGGAAATGTCCGAGTGCGGCGGGGAGGG
GTGACGAGAGGTAGTGAATTTGGTAGGGATGTTCTCGGAGGTGACGTAGG
CGCAGGTAGCCCCTCTCACCAAAGCTAGTTTGGAAGACTAGATGTAGATA
GTCCGATCGAGGCACGGGCACAATGTACATCTCTCAAAGTGTTCTGAGCC
GGTCCGACAAAGAGTACTGCTGCCGTGCATCTGTAGAAACAAACGTATGC
GCCGTTGTCTCTCCCTTTCTTTGGATTTTGACGGCGCCTGCCACTGCTGC
CGCTGCCGCTGCCGCTGCTTCTGATGCTCTACAGGCATGTTTTCTCCGAT
TGGTAGCTCTCGCTGGGAGGACGCCACGCTGGAGGACGATTCGAAAACGA
TATTCTCCATCTTCTCCATAGACGGCAACGAAGGATTGACTCCTGCTGAT
TCTCGTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14061:567..4525+

>mRNA_Ecto-sp13_S_contig14061.3168.1 ID=mRNA_Ecto-sp13_S_contig14061.3168.1|Name=mRNA_Ecto-sp13_S_contig14061.3168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14061:567..4525+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCTATCCCAGCGGGCCTGGGTGAGCTAGACGCCCTGGAGCATTTGCA
CCTGACCAACAACGAACTCCACGGAGCCATCCCGCCCGAGCTTGGGCGAC
TCTTCTCCCTCACGGATCTTCGTCTGTACTGCAACCATCTCTCCGGCAGC
ATCCCGCCGGAGCTAGGAAATCTCCATGCTCTCAAGAAGCTTGTGGTCTA
CAGCAACGACCTCTCTGGGACGGTTCCGCCGGAGCTGGAGGGGCTACGGG
CTCTGGAGGAGCTCCTTTTGTCGGACAACAAGCACCTCCTAGGCGACATC
CCGCCGGGGCTGGACCGAAACCTGGCTCTCAACAGGCACACAAAGCAGCT
CCCCGCCGGCGTACTCGCGGGCATGTTTTCTCCGATTGGTAGCTCTCGCT
GGGAGGACGCCACGCTGGAGGACGATTCGAAAACGATATTCTCCATCTTC
TCCATAGACGGCAACGAAGGATTGACTCCTGCTGATTCTCGTGCC
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