mRNA_Ecto-sp13_S_contig1404.3151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1404.3151.1
Unique NamemRNA_Ecto-sp13_S_contig1404.3151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1404.3151.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 1.900e-116
Identity = 217/279 (77.78%), Postives = 219/279 (78.49%), Query Frame = 1 
Query:   13 EGKASVAAVTDEGDTVLHAAAGSGTPSCGGGGPAGRMVKLILKSGADVDTCNRLGSTALHLAAAAADLDSVALLLSAGGNPSVVNSCGLCPGAGFLRPPNGGAATATATTDTASSERVKDVRWIIREHRERFGHVRRLADASAKRVAVEAVADGATASVHRFVDFALKV--------------QRWDLDARNHRTRLRRLDKFRSDILSDSPKQPTASDGNDGGNSLLLDLSPERESGAARAVKGRTKAAAEATKGGKLALRDLEDWRGRISAERAAVE 807
            EGKASVAA TDEGDTVLHAAAGSGTP CGGG                                AAADLDSVALLLSAG N SVVNSCGLCPGAGFLRPPNGGAA ATATT T SSERVKDVRW+IR HRER GHVRRLADASAKRVAVEAVADGATASVHRFVDFALKV              QRWDLDARNHRTRLRRLDKFRSDILSD PKQPTA DGN+GGNSLLLDLSPERES AAR VKGRTKAAAEATK GKLALRDLEDWRGRISAERAAVE
Sbjct:  327 EGKASVAAATDEGDTVLHAAAGSGTPPCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADLDSVALLLSAGANASVVNSCGLCPGAGFLRPPNGGAAIATATTYTGSSERVKDVRWMIRGHRERLGHVRRLADASAKRVAVEAVADGATASVHRFVDFALKVPMLVVGTQRETWTVQRWDLDARNHRTRLRRLDKFRSDILSDPPKQPTAVDGNNGGNSLLLDLSPERESRAARVVKGRTKAAAEATKEGKLALRDLEDWRGRISAERAAVE 605
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1404.3151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE1.900e-11677.78Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1404contigEcto-sp13_S_contig1404:12554..13825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size814
Hectar predicted targeting categoryother localisation
Exons3
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.9808605-CDS-Ecto-sp13_S_contig1404:12553..127371681462749.9808605-CDS-Ecto-sp13_S_contig1404:12553..12737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1404 12554..12737 +
1681462749.9894552-CDS-Ecto-sp13_S_contig1404:12927..132591681462749.9894552-CDS-Ecto-sp13_S_contig1404:12927..13259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1404 12928..13259 +
1681462749.997731-CDS-Ecto-sp13_S_contig1404:13529..138231681462749.997731-CDS-Ecto-sp13_S_contig1404:13529..13823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1404 13530..13823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1404.3151.1prot_Ecto-sp13_S_contig1404.3151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1404 12554..13823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1404.3151.1

>prot_Ecto-sp13_S_contig1404.3151.1 ID=prot_Ecto-sp13_S_contig1404.3151.1|Name=mRNA_Ecto-sp13_S_contig1404.3151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
ALIREGKASVAAVTDEGDTVLHAAAGSGTPSCGGGGPAGRMVKLILKSGA
DVDTCNRLGSTALHLAAAAADLDSVALLLSAGGNPSVVNSCGLCPGAGFL
RPPNGGAATATATTDTASSERVKDVRWIIREHRERFGHVRRLADASAKRV
AVEAVADGATASVHRFVDFALKVQRWDLDARNHRTRLRRLDKFRSDILSD
SPKQPTASDGNDGGNSLLLDLSPERESGAARAVKGRTKAAAEATKGGKLA
LRDLEDWRGRISAERAAVER
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mRNA from alignment at Ecto-sp13_S_contig1404:12554..13825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1404.3151.1 ID=mRNA_Ecto-sp13_S_contig1404.3151.1|Name=mRNA_Ecto-sp13_S_contig1404.3151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1404:12554..13825+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTTATTCGGGAGGGGAAGGCCTCCGTGGCGGCGGTGACGGACGAGGG
CGACACGGTGCTGCACGCCGCCGCGGGGTCCGGCACGCCGTCCTGCGGCG
GCGGAGGACCCGCCGGACGTATGGTGAAGCTGATTTTGAAGTCCGGGGCG
GACGTAGACACGTGCAACCGGCTCGGGTCAACAGGTTAGGAGCCCCTCGG
GTGGCCGTGTTCATGCTCTTTTGGTTAGTTTTACCGCAGGAAAGCCCCCT
TGCTTGCTGCTGACGGAAGACGCACACACACACACACACTGTGATCTGTT
GTTCCCCGGTGCATCCGGGTTCTTGCGTTTGCCTTGTGGTTAAAAACTGC
CCCTTCTTTTTTTTTTCTTCGCAGCGCTTCACCTGGCAGCCGCCGCGGCG
GACCTCGACTCGGTGGCGCTTCTCCTATCGGCCGGCGGCAACCCTAGCGT
CGTCAACTCTTGCGGGCTTTGCCCGGGCGCCGGGTTCCTTCGGCCGCCGA
ACGGCGGCGCCGCAACCGCAACGGCGACGACCGACACGGCCTCGAGCGAG
CGTGTGAAGGACGTGCGTTGGATTATTCGGGAGCACCGGGAGCGGTTCGG
GCACGTCCGGAGGCTGGCCGATGCGAGCGCCAAGCGCGTGGCGGTGGAGG
CGGTGGCGGACGGAGCTACGGCGTCGGTCCACCGCTTCGTGGACTTCGCG
CTCAAGGTGCCGATGCTCGTTGTGGGTACTCAGCGAGAAACCTGGACCGT
TGCACAATCGACCATTTGATGGAACAAGTAAACCTAAGTTGTTTTGTGAG
GAAACACAGAAAACTCTACGAAACGACCAGTAGTCCAACTACAAGTTGGA
CAAATACTTGGAATATCCCGAGTTGTGTTTCCTACGATGACGTCTCTTCC
CTATGTCGGCCTTCAACTATGCTTCCTCCTCCTCCTCCTCGTCCTCCTAC
TCCGCCCCCCCCTTTACTCACACCAGGTCCAGCGTTGGGACCTCGACGCC
CGGAACCACCGCACCCGCCTCCGGCGCCTGGACAAGTTCCGGTCTGACAT
CCTGTCCGATTCCCCCAAGCAACCAACCGCCTCTGACGGCAACGACGGGG
GCAATTCGCTGCTCTTGGACCTGTCCCCGGAGCGCGAGAGTGGGGCCGCT
CGAGCGGTAAAGGGTCGGACGAAGGCTGCGGCGGAGGCGACAAAGGGCGG
TAAGCTCGCGCTGCGAGACCTCGAAGACTGGAGGGGACGAATTTCCGCCG
AGCGCGCGGCGGTGGAGCGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1404:12554..13825+

>mRNA_Ecto-sp13_S_contig1404.3151.1 ID=mRNA_Ecto-sp13_S_contig1404.3151.1|Name=mRNA_Ecto-sp13_S_contig1404.3151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1404:12554..13825+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTTATTCGGGAGGGGAAGGCCTCCGTGGCGGCGGTGACGGACGAGGG
CGACACGGTGCTGCACGCCGCCGCGGGGTCCGGCACGCCGTCCTGCGGCG
GCGGAGGACCCGCCGGACGTATGGTGAAGCTGATTTTGAAGTCCGGGGCG
GACGTAGACACGTGCAACCGGCTCGGGTCAACAGCGCTTCACCTGGCAGC
CGCCGCGGCGGACCTCGACTCGGTGGCGCTTCTCCTATCGGCCGGCGGCA
ACCCTAGCGTCGTCAACTCTTGCGGGCTTTGCCCGGGCGCCGGGTTCCTT
CGGCCGCCGAACGGCGGCGCCGCAACCGCAACGGCGACGACCGACACGGC
CTCGAGCGAGCGTGTGAAGGACGTGCGTTGGATTATTCGGGAGCACCGGG
AGCGGTTCGGGCACGTCCGGAGGCTGGCCGATGCGAGCGCCAAGCGCGTG
GCGGTGGAGGCGGTGGCGGACGGAGCTACGGCGTCGGTCCACCGCTTCGT
GGACTTCGCGCTCAAGGTCCAGCGTTGGGACCTCGACGCCCGGAACCACC
GCACCCGCCTCCGGCGCCTGGACAAGTTCCGGTCTGACATCCTGTCCGAT
TCCCCCAAGCAACCAACCGCCTCTGACGGCAACGACGGGGGCAATTCGCT
GCTCTTGGACCTGTCCCCGGAGCGCGAGAGTGGGGCCGCTCGAGCGGTAA
AGGGTCGGACGAAGGCTGCGGCGGAGGCGACAAAGGGCGGTAAGCTCGCG
CTGCGAGACCTCGAAGACTGGAGGGGACGAATTTCCGCCGAGCGCGCGGC
GGTGGAGCGG
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