mRNA_Ecto-sp13_S_contig14.3113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KBR0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR0_9PHAE) HSP 1 Score: 256 bits (655), Expect = 6.330e-76 Identity = 165/340 (48.53%), Postives = 198/340 (58.24%), Query Frame = 3
Query: 51 TEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL-----------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRLATESSRNGSRSPRDCDEDLYRLHCCLT-SSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGR----------RPGE----IMTIIVEVFGAFGQTVSEKREETLVMKVPEREPQKGAPPPSHPLDL 977
T +Q LG L E RA +G+KNWKA GHDSLP ELL IDD DEP VL KK +RSN NN RGISL+SH KV +K++ NRL + ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+ PLY+CF D K YDSVDRE+LW+VLARAGI ++I VIR FH GM+AR+R+ + + R CD+D+ HCC T SS R R L DSA+ L G G W G G GG G + R R G R E +MTIIVEVFG FG TVSEK+ ETL+M+ ++ PP PL +
Sbjct: 47 TRDTQRLGDVPELKEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTIFVKVLYKKGDRSNCNNYRGISLISHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARMRM-DDGELSDWLFVRACDKDMSYPHCCSTYSSPRSSRSLSSDSARMMLLCGA----WGSWRRGKRKQG----GGGGEEIYLNRVRRAVWGMLNADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPPLPPPLTI 376
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 240 bits (612), Expect = 6.010e-67 Identity = 215/606 (35.48%), Postives = 249/606 (41.09%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
++ +V QRP T ++HL + L E A +G+ NWKA G D L ELL +D DEP+VL KK +RSN NN RGISLLSH KVL K + NRL + ILPEEQCGFRPGR TV MLFVV RLQE+ RRR PLY+CF D QK YDSVDRELLW+VLARAGI EMIAVIR FH GM+ARVR T+ R G S SP DE + R L RR L D + + + D AG + G A +MTIIVEVF FG TVSE++ ETLVM+V ER+ + GAP +H L R G KRG SVEATVR R LLFAGA PD R P+ E G GP Q P CLKDD F A ST D FG+P+ W AAKVE GVPW+ G
Sbjct: 164 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGRLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 734
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 232 bits (592), Expect = 2.520e-65 Identity = 213/600 (35.50%), Postives = 245/600 (40.83%), Query Frame = 3
Query: 30 QRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
QRP T ++HL + L E A +G+ NWKA G D L ELL +D DEP+VL KK +RSN NN RGISLLSH KVL K + NRL + ILPEEQCGFRPGR TV MLFVV RLQE+ RRR PLY+CF D QK YDSVDRELLW+VLARAGI EMIAVIR FH GM+ARVR T+ R G S SP DE + R L RR L D + + + D AG + G A +MTIIVEVF FG TVSE++ ETLVM+V ER+ + GAP +H L R G KRG SVEATVR R LLFAGA PD R P+ E G P + P +CLKDD F A ST D FGIP+ W AAKVE GVPW+ G
Sbjct: 2 QRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAG 566
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 236 bits (603), Expect = 3.940e-64 Identity = 214/606 (35.31%), Postives = 248/606 (40.92%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
++ +V QRP T ++HL + L E A +G+ NWKA G D L ELL +D DEP+VL KK +RSN NN RGISLLSH KVL K + NRL + ILPEEQCGFRPGR TV MLFVV RLQE+ RRR PLY+CF D QK YDSVDRELLW+VLARAGI EMIAVIR FH GM+ARVR T+ R G S SP DE + R L RR L D + + + D AG + G A +MTIIVEVF FG TVSE++ ETLVM+V ER+ + GAP +H L R G KRG SVEATVR R LLFAGA PD R P+ E G P Q P CLKDD F A ST D FG+P+ W AAKVE GVPW+ G
Sbjct: 780 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 1350
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 236 bits (601), Expect = 4.100e-64 Identity = 213/606 (35.15%), Postives = 248/606 (40.92%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
++ +V QRP T ++HL + L E A +G+ NWKA G D L ELL +D DEP+VL KK +RSN NN RGISLLSH KVL K + NRL + ILPEEQCGFRPGR TV MLFVV RLQE+ RRR PLY+CF D QK YDSVDRELLW+VLARAGI EMIAVIR FH GM+ARVR T+ R G S SP DE + R L RR L D + + + D AG + G A +MTIIVEVF FG TVSE++ ETLVM+V ER+ + GAP +H L R G KRG SVEATVR R LLFAGA PD R P+ E G P + P CLKDD F A ST D FG+P+ W AAKVE GVPW+ G
Sbjct: 493 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAG 1063
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 236 bits (602), Expect = 5.740e-64 Identity = 214/606 (35.31%), Postives = 248/606 (40.92%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
++ +V QRP T ++HL + L E A +G+ NWKA G D L ELL +D DEP+VL KK +RSN NN RGISLLSH KVL K + NRL + ILPEEQCGFRPGR TV MLFVV RLQE+ RRR PLY+CF D QK YDSVDRELLW+VLARAGI EMIAVIR FH GM+ARVR T+ R G S SP DE + R L RR L D + + + D AG + G A +MTIIVEVF FG TVSE++ ETLVM+V ER+ + GAP +H L R G KRG SVEATVR R LLFAGA PD R P+ E G P Q P CLKDD F A ST D FG+P+ W AAKVE GVPW+ G
Sbjct: 984 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 1554
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE) HSP 1 Score: 211 bits (536), Expect = 1.050e-60 Identity = 120/217 (55.30%), Postives = 137/217 (63.13%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL 563
II V QRP T +Q LG L E RA +G+KNWKA GHDSLP ELL IDD DEP VL KK NRSN NN RGISLLSH KV +K++ NRL + ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+ PLY+CF D K YDSVDRE+LW+VLARAGI ++I VIR FH GM+ARVR+
Sbjct: 62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNREDNPRDWKDTTIKVLYKKGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRM 274
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE) HSP 1 Score: 218 bits (556), Expect = 7.950e-60 Identity = 160/380 (42.11%), Postives = 192/380 (50.53%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNGS-RSPRDCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGR----------RPGE----IMTIIVEVFGAFGQTVSEKREETLVMKVPEREPQKGAPPPSHPLDL 977
IIG V QRP T +Q LG L E RA +G+KNWKA GHDSLP ELL IDD DEP VL KK +RSN NN RGISLLSH KV +K++ NRL + ILPEEQCGFRPGR TV+ML VV RLQE+ RR+ P Y+CF D K YDSVDRE+LW+VLARAGI ++ IR FH GM+ARVR+ T+ R G SP L+ + +R + L S + +EG EGG G R R G R E +MTIIVEVFG FG TVSEK+ ETL+M+ ++ P P PL +
Sbjct: 112 IIGRVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLCVVRRLQELGRRKKIPFYMCFVDLNKAYDSVDREMLWKVLARAGIPARLLKAIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPL-----LFNIFFAEVLEVVVIR---FSEDDVVLRSLV------CLEEGKT------EGGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTI 467
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 217 bits (553), Expect = 4.670e-59 Identity = 209/608 (34.38%), Postives = 254/608 (41.78%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNGS-RSPRDCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEG----------GVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPEREP--QKGAPPPSHPL------------------------DLAR--------------------------PSP*KGRMPKRG----------------------------------------------------------SVEATVRIRPLLFAGAW---PDNRTGDPRSD*CLETSWG-----GGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGC-------WPIAAKVEKGVPWY 1298
II V QRP T +Q LG L E RA +G+KNWKA GHDSLP ELL IDD DEP VL K+ +RSN NN RGISLLSH KV +K++ NRL + ILPEEQCG RPGR TV+MLFVV RLQE+ RR+ PLY+CF D K YDSVDRE++W+VLARAGI ++I VIR FH GM+AR + T+ + G SP L+ + +R + L S + +EG AG E G+ YA R G +MTIIVEVFG FG TVSEK+ ETL+M+ ++ + APPP + DL R PS K R+ + SVEAT+R R LLFAGA PD R P+ E + G GG Q P+ C+ DD FGAD ST D GIP W AAKVE GVPW+
Sbjct: 62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKQGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGCRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMVWKVLARAGIPAKLIEVIRQFHDGMRARAGMDDGELSDWFFVTQGAGQGCVLSPL-----LFNIFFAEVLEVVVIR---FSEDDVVLRSLV------CLEEGKTEAGGGEETPLDRVRRAVWGMSYADDAGVVSRSAEGL--ARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRL--PKRLMFGELAGGEKRRRGGQEQNWPK-----CVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWH 642
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5J8S3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S3_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.110e-58 Identity = 118/217 (54.38%), Postives = 136/217 (62.67%), Query Frame = 3
Query: 12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL 563
II V QRP T +Q LG L E RA +G+KNWKA GHDSLP ELL IDD DEP VL K +RSN NN RGISLLSH KV +K++ NRL + ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+ PLY+CF D K YDSVDRE+LW+VLARAGI ++I VIR FH GM+ARVR+
Sbjct: 62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKGWNGGDIPRVWKNATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRM 274 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14.3113.1 >prot_Ecto-sp13_S_contig14.3113.1 ID=prot_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp MKNWKACGHDSLPVELLNIDDVDEPIVLCKKSNRSNSNNSRGISLLSHASback to top mRNA from alignment at Ecto-sp13_S_contig14:561..2191- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14.3113.1 ID=mRNA_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:561..2191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14:561..2191- >mRNA_Ecto-sp13_S_contig14.3113.1 ID=mRNA_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:561..2191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |