mRNA_Ecto-sp13_S_contig14.3113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14.3113.1
Unique NamemRNA_Ecto-sp13_S_contig14.3113.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KBR0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 6.330e-76
Identity = 165/340 (48.53%), Postives = 198/340 (58.24%), Query Frame = 3
Query:   51 TEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL-----------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRLATESSRNGSRSPRDCDEDLYRLHCCLT-SSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGR----------RPGE----IMTIIVEVFGAFGQTVSEKREETLVMKVPEREPQKGAPPPSHPLDL 977
            T  +Q LG    L E  RA +G+KNWKA GHDSLP ELL IDD DEP VL            KK +RSN NN RGISL+SH  KV +K++ NRL  +     ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+  PLY+CF D  K YDSVDRE+LW+VLARAGI  ++I VIR FH GM+AR+R+  +   +     R CD+D+   HCC T SS R  R L  DSA+  L  G      G W  G    G    GG G  +   R  R   G           R  E    +MTIIVEVFG FG TVSEK+ ETL+M+  ++      PP   PL +
Sbjct:   47 TRDTQRLGDVPELKEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTIFVKVLYKKGDRSNCNNYRGISLISHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARMRM-DDGELSDWLFVRACDKDMSYPHCCSTYSSPRSSRSLSSDSARMMLLCGA----WGSWRRGKRKQG----GGGGEEIYLNRVRRAVWGMLNADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPPLPPPLTI 376          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 6.010e-67
Identity = 215/606 (35.48%), Postives = 249/606 (41.09%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
            ++ +V QRP    T  ++HL +   L E   A +G+ NWKA G D L  ELL +D  DEP+VL                             KK +RSN NN RGISLLSH  KVL K + NRL  +     ILPEEQCGFRPGR TV MLFVV RLQE+ RRR  PLY+CF D QK YDSVDRELLW+VLARAGI  EMIAVIR FH GM+ARVR            T+  R G S SP                    DE + R    L    RR   L  D  +  +   +            D AG   +   G A                 +MTIIVEVF  FG TVSE++ ETLVM+V ER+                                                              + GAP                                   +H   L R     G   KRG                 SVEATVR R LLFAGA    PD R   P+     E   G GP Q  P      CLKDD   F A   ST D    FG+P+  W  AAKVE GVPW+ G
Sbjct:  164 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGRLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 734          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.520e-65
Identity = 213/600 (35.50%), Postives = 245/600 (40.83%), Query Frame = 3
Query:   30 QRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
            QRP    T  ++HL +   L E   A +G+ NWKA G D L  ELL +D  DEP+VL                             KK +RSN NN RGISLLSH  KVL K + NRL  +     ILPEEQCGFRPGR TV MLFVV RLQE+ RRR  PLY+CF D QK YDSVDRELLW+VLARAGI  EMIAVIR FH GM+ARVR            T+  R G S SP                    DE + R    L    RR   L  D  +  +   +            D AG   +   G A                 +MTIIVEVF  FG TVSE++ ETLVM+V ER+                                                              + GAP                                   +H   L R     G   KRG                 SVEATVR R LLFAGA    PD R   P+     E   G  P +  P     +CLKDD   F A   ST D    FGIP+  W  AAKVE GVPW+ G
Sbjct:    2 QRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAG 566          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 3.940e-64
Identity = 214/606 (35.31%), Postives = 248/606 (40.92%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
            ++ +V QRP    T  ++HL +   L E   A +G+ NWKA G D L  ELL +D  DEP+VL                             KK +RSN NN RGISLLSH  KVL K + NRL  +     ILPEEQCGFRPGR TV MLFVV RLQE+ RRR  PLY+CF D QK YDSVDRELLW+VLARAGI  EMIAVIR FH GM+ARVR            T+  R G S SP                    DE + R    L    RR   L  D  +  +   +            D AG   +   G A                 +MTIIVEVF  FG TVSE++ ETLVM+V ER+                                                              + GAP                                   +H   L R     G   KRG                 SVEATVR R LLFAGA    PD R   P+     E   G  P Q  P      CLKDD   F A   ST D    FG+P+  W  AAKVE GVPW+ G
Sbjct:  780 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLHKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 1350          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 4.100e-64
Identity = 213/606 (35.15%), Postives = 248/606 (40.92%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
            ++ +V QRP    T  ++HL +   L E   A +G+ NWKA G D L  ELL +D  DEP+VL                             KK +RSN NN RGISLLSH  KVL K + NRL  +     ILPEEQCGFRPGR TV MLFVV RLQE+ RRR  PLY+CF D QK YDSVDRELLW+VLARAGI  EMIAVIR FH GM+ARVR            T+  R G S SP                    DE + R    L    RR   L  D  +  +   +            D AG   +   G A                 +MTIIVEVF  FG TVSE++ ETLVM+V ER+                                                              + GAP                                   +H   L R     G   KRG                 SVEATVR R LLFAGA    PD R   P+     E   G  P +  P      CLKDD   F A   ST D    FG+P+  W  AAKVE GVPW+ G
Sbjct:  493 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGEGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAG 1063          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 5.740e-64
Identity = 214/606 (35.31%), Postives = 248/606 (40.92%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNG-SRSPR-----------------DCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPERE-------------------------------------------------------------PQKGAP---------------------------------PPSHPLDLARPSP*KGRMPKRG-----------------SVEATVRIRPLLFAGA---WPDNRTGDPRSD*CLETSWGGGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGCWPIAAKVEKGVPWYKG 1304
            ++ +V QRP    T  ++HL +   L E   A +G+ NWKA G D L  ELL +D  DEP+VL                             KK +RSN NN RGISLLSH  KVL K + NRL  +     ILPEEQCGFRPGR TV MLFVV RLQE+ RRR  PLY+CF D QK YDSVDRELLW+VLARAGI  EMIAVIR FH GM+ARVR            T+  R G S SP                    DE + R    L    RR   L  D  +  +   +            D AG   +   G A                 +MTIIVEVF  FG TVSE++ ETLVM+V ER+                                                              + GAP                                   +H   L R     G   KRG                 SVEATVR R LLFAGA    PD R   P+     E   G  P Q  P      CLKDD   F A   ST D    FG+P+  W  AAKVE GVPW+ G
Sbjct:  984 VVEQVMQRPA---TRATRHLAAVPDLEEVEAATKGLGNWKAVGPDLLAAELLKVDGDDEPVVLERLRAIFVEVWNGGEMPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGGL-LDRVRRAVWGMLY----------ADDAGVVSKSADGLA----------------RMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI---GYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRL--PKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAG 1554          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.050e-60
Identity = 120/217 (55.30%), Postives = 137/217 (63.13%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL 563
            II  V QRP    T  +Q LG    L E  RA +G+KNWKA GHDSLP ELL IDD DEP VL                             KK NRSN NN RGISLLSH  KV +K++ NRL  +     ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+  PLY+CF D  K YDSVDRE+LW+VLARAGI  ++I VIR FH GM+ARVR+
Sbjct:   62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNREDNPRDWKDTTIKVLYKKGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRM 274          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 7.950e-60
Identity = 160/380 (42.11%), Postives = 192/380 (50.53%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNGS-RSPRDCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEGGVGYAVRRQR*VRIEIGR----------RPGE----IMTIIVEVFGAFGQTVSEKREETLVMKVPEREPQKGAPPPSHPLDL 977
            IIG V QRP    T  +Q LG    L E  RA +G+KNWKA GHDSLP ELL IDD DEP VL                             KK +RSN NN RGISLLSH  KV +K++ NRL  +     ILPEEQCGFRPGR TV+ML VV RLQE+ RR+  P Y+CF D  K YDSVDRE+LW+VLARAGI   ++  IR FH GM+ARVR+           T+  R G   SP      L+ +          +R   +      L S +        +EG        EGG G      R  R   G           R  E    +MTIIVEVFG FG TVSEK+ ETL+M+  ++      P P  PL +
Sbjct:  112 IIGRVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKKGDRSNCNNYRGISLLSHVGKVQIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLCVVRRLQELGRRKKIPFYMCFVDLNKAYDSVDREMLWKVLARAGIPARLLKAIRQFHDGMRARVRMDDGELSDWFFVTQGVRQGCVLSPL-----LFNIFFAEVLEVVVIR---FSEDDVVLRSLV------CLEEGKT------EGGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTI 467          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 4.670e-59
Identity = 209/608 (34.38%), Postives = 254/608 (41.78%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL----------ATESSRNGS-RSPRDCDEDLYRLHCCLTSSRRRLR*L*YDSAKTTLSSGI**T*GGDWDEGNDTAGTSPEG----------GVGYAVRRQR*VRIEIGRRPGEIMTIIVEVFGAFGQTVSEKREETLVMKVPEREP--QKGAPPPSHPL------------------------DLAR--------------------------PSP*KGRMPKRG----------------------------------------------------------SVEATVRIRPLLFAGAW---PDNRTGDPRSD*CLETSWG-----GGPRQRVPRNVSFVCLKDDFVEFGADAESTDDDLRTFGIPRGC-------WPIAAKVEKGVPWY 1298
            II  V QRP    T  +Q LG    L E  RA +G+KNWKA GHDSLP ELL IDD DEP VL                             K+ +RSN NN RGISLLSH  KV +K++ NRL  +     ILPEEQCG RPGR TV+MLFVV RLQE+ RR+  PLY+CF D  K YDSVDRE++W+VLARAGI  ++I VIR FH GM+AR  +           T+ +  G   SP      L+ +          +R   +      L S +        +EG   AG   E           G+ YA       R   G     +MTIIVEVFG FG TVSEK+ ETL+M+  ++     + APPP   +                        DL R                          PS  K R+ +                                                            SVEAT+R R LLFAGA    PD R   P+     E + G     GG  Q  P+     C+ DD   FGAD  ST  D    GIP          W  AAKVE GVPW+
Sbjct:   62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKVWNGGDIPREWKDATIKVLYKQGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGCRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMVWKVLARAGIPAKLIEVIRQFHDGMRARAGMDDGELSDWFFVTQGAGQGCVLSPL-----LFNIFFAEVLEVVVIR---FSEDDVVLRSLV------CLEEGKTEAGGGEETPLDRVRRAVWGMSYADDAGVVSRSAEGL--ARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRL--PKRLMFGELAGGEKRRRGGQEQNWPK-----CVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWH 642          
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Match: A0A6H5J8S3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S3_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.110e-58
Identity = 118/217 (54.38%), Postives = 136/217 (62.67%), Query Frame = 3
Query:   12 IIGEVKQRPKVTTTEGSQHLGSATTLNETRRAARGMKNWKACGHDSLPVELLNIDDVDEPIVL----------------------------CKKSNRSNSNNSRGISLLSHASKVLLKVVANRLIDY-----ILPEEQCGFRPGRPTVNMLFVV*RLQEVARRRSNPLYVCFFDHQKVYDSVDRELLWRVLARAGISEEMIAVIR*FHGGMQARVRL 563
            II  V QRP    T  +Q LG    L E  RA +G+KNWKA GHDSLP ELL IDD DEP VL                             K  +RSN NN RGISLLSH  KV +K++ NRL  +     ILPEEQCGFRPGR TV+MLFVV RLQE+ RR+  PLY+CF D  K YDSVDRE+LW+VLARAGI  ++I VIR FH GM+ARVR+
Sbjct:   62 IIERVTQRPA---TRDTQRLGDVPELEEVARATKGLKNWKAPGHDSLPAELLKIDD-DEPFVLGHLHTILVKGWNGGDIPRVWKNATIKVLYKNGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRM 274          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14.3113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBR0_9PHAE6.330e-7648.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE6.010e-6735.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE2.520e-6535.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE3.940e-6435.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE4.100e-6435.15Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE5.740e-6435.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7A9_9PHAE1.050e-6055.30Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8C3_9PHAE7.950e-6042.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE4.670e-5934.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5J8S3_9PHAE1.110e-5854.38Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14contigEcto-sp13_S_contig14:561..2191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score69.3
Seed ortholog evalue9.9e-10
Seed eggNOG ortholog6500.XP_005092035.1
Model size1547
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BI15@33208,3D94V@33213,KOG1075@1,KOG1075@2759
Cds size261
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.8787563-UTR-Ecto-sp13_S_contig14:560..17301681462746.8787563-UTR-Ecto-sp13_S_contig14:560..1730Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14 561..1730 -
1681462746.9095747-UTR-Ecto-sp13_S_contig14:2075..21911681462746.9095747-UTR-Ecto-sp13_S_contig14:2075..2191Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14 2076..2191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.8900695-CDS-Ecto-sp13_S_contig14:1730..19131681462746.8900695-CDS-Ecto-sp13_S_contig14:1730..1913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14 1731..1913 -
1681462746.900036-CDS-Ecto-sp13_S_contig14:1997..20751681462746.900036-CDS-Ecto-sp13_S_contig14:1997..2075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14 1998..2075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14.3113.1prot_Ecto-sp13_S_contig14.3113.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14 1731..2075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14.3113.1

>prot_Ecto-sp13_S_contig14.3113.1 ID=prot_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MKNWKACGHDSLPVELLNIDDVDEPIVLCKKSNRSNSNNSRGISLLSHAS
KVLLKVVANRLIDYILPEEQCGFRPGRPTVNMLFVV*
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mRNA from alignment at Ecto-sp13_S_contig14:561..2191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14.3113.1 ID=mRNA_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:561..2191- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACCCGTCCCATCATCGGGGAGGTAAAACAACGACCAAAGGTAACAACC ACTGAAGGCTCCCAACACCTAGGGTCCGCAACAACCCTGAATGAGACTCG GAGAGCAGCACGGGGAATGAAAAACTGGAAAGCGTGTGGTCATGATTCCC TGCCGGTAGAACTACTCAACATTGACGACGTAGACGAGCCCATCGTGATC GAACGTTTCCACGCCATCCTCGTCGACGTGTGGAACGGGAGGGAGGTCCC GCAGGAATGGAGCGATGCCACCATCAAGGTACTTTGCAAGAAGTCGAACC GATCTAACTCTAACAACAGCAGGGGGATATCCCTTCTGTCGCACGCGAGC AAGGTACTCCTGAAAGTCGTCGCTAACCGTCTCATTGACTACATCTTGCC GGAAGAGCAGTGCGGCTTCCGACCTGGTAGGCCCACCGTCAACATGCTGT TCGTCGTATGACGACTGCAGGAGGTGGCACGGAGACGGAGTAACCCGCTG TACGTGTGCTTCTTCGACCACCAGAAGGTTTATGACTCAGTCGACCGGGA GCTACTGTGGCGGGTGCTGGCCCGAGCGGGGATCTCGGAGGAAATGATCG CGGTCATCCGCTAGTTTCACGGCGGCATGCAAGCTCGGGTACGCTTGGCG ACGGAGAGCTCTCGGAATGGTTCGAGGTCACCCAGGGACTGCGACGAGGA TTTATACCGTCTCCACTGCTGTTTAACATCTTCGCGGCGGCGCTTGAGGT AGCTCTGATACGATTCAGCGAAGACGACGTTATCTTCAGGGATCTGATAA ACTTGAGGAGGAGACTGGGACGAGGGCAACGACACCGCTGGAACGAGTCC GGAAGGCGGTGTGGGGTATGCTGTACGCCGACAACGCTGAGTTCGTATCG AGATCGGTCGAAGGCCTGGCGAGATTATGACCATTATCGTCGAAGTGTTT GGAGCTTTCGGACAGACAGTGTCGGAGAAGAGGGAAGAGACTCTCGTGAT GAAGGTGCCGGAGAGGGAACCGCAGAAGGGAGCGCCGCCACCGTCACACC CACTAGATCTCGCACGCCCAAGCCCCTAAAAAGGTCGGATGCCAAAGCGT GGAAGCGTGGAGGCCACTGTTCGAATACGGCCACTACTGTTTGCTGGGGC ATGGCCAGACAACCGGACGGGCGACCCCCGAAGCGATTGATGTTTGGAGA CATCGTGGGGGGGAGGACCCAGGCAGCGGGTGCCCAGAAATGTTTCGTTT GTGTGCTTGAAGGACGACTTTGTAGAATTCGGTGCCGATGCCGAATCCAC GGATGACGACCTGAGGACATTCGGGATACCGCGTGGCTGCTGGCCTATCG CAGCGAAGGTAGAGAAAGGGGTGCCGTGGTACAAGGGGTGACAGAGGGAG CGGAGAAGTTTATGGTCCAATGGCGCAAGGAGCAAGAGAAGCCAAGCAGA CTACGGATGGAGGAACGGAACAAGAAAACCACCAATAGAAGACCCAAAGG ACAGCAGAGCAGGGGGGGAAGGGGACACCGAGGGGGTAACGTCGAAAGAT AGAAGGCATGACTGCAACTGAAGAGCGCAGGACGGAGATGGCTGAACGGA TAGAGACATGTTCTGGAGTGATGATGATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14:561..2191-

>mRNA_Ecto-sp13_S_contig14.3113.1 ID=mRNA_Ecto-sp13_S_contig14.3113.1|Name=mRNA_Ecto-sp13_S_contig14.3113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:561..2191- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAACTGGAAAGCGTGTGGTCATGATTCCCTGCCGGTAGAACTACT
CAACATTGACGACGTAGACGAGCCCATCGTACTTTGCAAGAAGTCGAACC
GATCTAACTCTAACAACAGCAGGGGGATATCCCTTCTGTCGCACGCGAGC
AAGGTACTCCTGAAAGTCGTCGCTAACCGTCTCATTGACTACATCTTGCC
GGAAGAGCAGTGCGGCTTCCGACCTGGTAGGCCCACCGTCAACATGCTGT
TCGTCGTATGA
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