mRNA_Ecto-sp13_S_contig13993.3111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE) HSP 1 Score: 403 bits (1036), Expect = 9.370e-140 Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 1
Query: 1 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 630
TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSY+KIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDH KADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ
Sbjct: 145 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYHKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHNKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 354
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A836CA10_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA10_9STRA) HSP 1 Score: 229 bits (583), Expect = 4.550e-71 Identity = 119/207 (57.49%), Postives = 150/207 (72.46%), Query Frame = 1
Query: 1 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGA--EVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAAR 615
TMTPDAQ+ALRRTMETY+ VTRFCLICNYVTRIIEPLASRCAKFRF AL ML RL +I+ E V I+A G QA++ L+GGDMRKAVT +QSA Q Y G+ E+T E L +++G++ + + +W A++SG + + AVD FM G PLS+LL + E T+AD IPD KA IC++I+EAD L+ G NEELQLLD+ R
Sbjct: 139 TMTPDAQAALRRTMETYTKVTRFCLICNYVTRIIEPLASRCAKFRFRALSNETMLTRLDHIAAAEHVSISAAGKQAVIGLAGGDMRKAVTTLQSAHQLYGGSGTEITAEALAEVSGRVSPALVEQIWLAVRSGDFRTLTDAVDAFMFEGSPLSSLLTTLLEDTLADDAIPDVTKAAICKKISEADYSLLLGANEELQLLDVGGFMMR 345
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A1Y1HK96_KLENI (Replication factor C subunit RFC4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK96_KLENI) HSP 1 Score: 210 bits (535), Expect = 5.190e-64 Identity = 104/208 (50.00%), Postives = 147/208 (70.67%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETYS VTRFC ICNY++RIIEPLASRCAKFRF LG+ M DR+ YI REE + + + L + +SGGDMR+A+T +QSAS+ + G+ ++ E ++ ++G +P +V + L ++ +SG Y+K V D ++ GY +S +L + + V + D +KA IC R+AEAD+CLIDG +E LQLLD+AS R+ C+
Sbjct: 126 MTEDAQNALRRTMETYSKVTRFCFICNYISRIIEPLASRCAKFRFKPLGREIMTDRIQYICREEGLSLDDEALNTLGKVSGGDMRRAITCLQSASRLF-GSRISSENIISVSGVVPDDVIEKLLTSCRSGDYDKAQGTVTDIIADGYAVSQILSQLHDEVVRAEDVTDEQKARICERVAEADKCLIDGGDEYLQLLDVASNTMRALCN 332
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A9NSN9_PICSI (AAA domain-containing protein n=2 Tax=Pinidae TaxID=3313 RepID=A9NSN9_PICSI) HSP 1 Score: 199 bits (506), Expect = 1.160e-59 Identity = 103/208 (49.52%), Postives = 143/208 (68.75%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETYS VTRFC ICNYV+RIIEPLASRCAKFRF L + M R+ +I +EE V + +D L + +S GD+R+A+T +QSA++ Y G+ ++ L+ ++G +P EV +L+ A K+G ++ V D ++ G+P S + + + V T I D KA I +R+AEAD+CLIDG +E LQLLD+AS A RS C+
Sbjct: 126 MTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLY-GSSISSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCN 332
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: B7FK39_MEDTR (Putative DNA polymerase III, subunit gamma/ tau, P-loop containing nucleoside triphosphate hydrolase n=10 Tax=Fabaceae TaxID=3803 RepID=B7FK39_MEDTR) HSP 1 Score: 198 bits (504), Expect = 2.320e-59 Identity = 99/208 (47.60%), Postives = 150/208 (72.12%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETYS VTRF ICNY++RIIEPLASRCAKFRF L + M R+ YI +EE + + A+GL + ++S GD+R+A+T +QSA++ + G+ ++ + L+ ++G +PAEV +AL A +SG+++ V++F++ GYP+S +L + EA V + I D +KA I +++ EAD+CL+DG +E LQLLD+ S ++ C+
Sbjct: 127 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIQALCN 333
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: W1NMK0_AMBTC (AAA domain-containing protein (Fragment) n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NMK0_AMBTC) HSP 1 Score: 198 bits (503), Expect = 3.460e-59 Identity = 102/208 (49.04%), Postives = 146/208 (70.19%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRT+ETYS VTRFC ICNYV+RIIEPLASRCAKFRF L + M R+S+I R+E + + ++ L + +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP +V ++ SA +SGS+ K V++ + GYP+S LL + + V T I D +KA I RIAEAD+ LIDG +E LQLLD+AS R+ C+
Sbjct: 128 MTEDAQNALRRTLETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRISHICRQESLNLDSEALATLSSISDGDLRRAITYLQSAARLF-GSSISAKNLISVSGVIPQDVVESFLSACRSGSFEKANKEVENITAEGYPVSQLLSQLFDMVVGTTDISDEQKARIFNRIAEADKYLIDGADEYLQLLDVASNTMRAICN 334
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A388K568_CHABU (AAA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K568_CHABU) HSP 1 Score: 196 bits (499), Expect = 1.240e-58 Identity = 102/208 (49.04%), Postives = 144/208 (69.23%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETY+ VTRFC ICNY++RIIEPLASRCAKFRF L M+ R+SYI +E + + + + + ++ GDMR+A+T++QSAS+ Y + ++L +++G +P EV L + KSG +++ AAV + + GYP+S +L MQ+ V + D +KA IC RIAEAD+CLIDG +E LQLLD+AS R+ C+
Sbjct: 123 MTEDAQNALRRTMETYTKVTRFCFICNYISRIIEPLASRCAKFRFKPLVSDIMVKRISYICDQEGLTLQPEAMDTLCRIADGDMRRAITSLQSASRRYGHCLMKKDIL-NVSGVVPDEVVADLLTTCKSGVFDRAQAAVTNVAAEGYPVSQILAQMQDRAVVAQDMTDEQKARICLRIAEADKCLIDGADEFLQLLDVASCTMRALCN 329
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6P6US56_COFAR (replication factor C subunit 2 isoform X3 n=2 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6US56_COFAR) HSP 1 Score: 194 bits (492), Expect = 2.340e-58 Identity = 97/208 (46.63%), Postives = 146/208 (70.19%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETYS VTRF ICNY++RIIEPLASRCAKFRF L + M +R+ YI +EE + + +D L + +S GD+R+A+T +QSA++ + G+ ++ L+ ++G IP +V AL+SA +SG+++ V + ++ GYP+S +L + + V I D +KA IC+++ EAD+CL+DG +E LQLLD+AS ++ C+
Sbjct: 59 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEDIMSNRILYICQEEGLSLDSDALATLSSISQGDLRRAITYLQSAARLF-GSSISSRDLISVSGVIPEDVVQALYSACRSGNFDLADKEVKNVIAEGYPVSQMLSQLFDLVVEADDISDEQKARICKKLGEADKCLVDGADEYLQLLDVASKTMQALCN 265
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A485KYI3_9STRA (Aste57867_13395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYI3_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.860e-58 Identity = 102/205 (49.76%), Postives = 142/205 (69.27%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARS 618
MT DAQSALRR ME YS VTRFCLICNYV+RIIEP+ASRCAKFR+ L + +M R+ ++S EE V I+ D + ++++SGGD+RKA+ +QSA+Q G E+T + ++ IAG P E+ D LW + SY+K+ VDD + SG+P+ T+L + + V ++ KKA +C RIAEAD+ L DG +E +QL+D+AS RS
Sbjct: 122 MTNDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRYQPLEKLSMTARIHHVSAEEQVAISDDAVTTLLEVSGGDLRKAINYLQSANQLN-GDEITQDDILAIAGVAPKELFDKLWQHVAKNSYDKLKDEVDDIIYSGFPVLTILHQLTDEVVQHPSMNQFKKAKVCLRIAEADKKLGDGASEYMQLMDVASFLMRS 325
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: UPI001B7DA897 (replication factor C subunit 2 isoform X4 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7DA897) HSP 1 Score: 193 bits (490), Expect = 4.830e-58 Identity = 97/208 (46.63%), Postives = 144/208 (69.23%), Query Frame = 1
Query: 4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
MT DAQ+ALRRTMETYS VTRF ICNY++RIIEPLASRCAKFRF L + M R+ +I +EE + + A+ L + +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP E+ A KSG+++ V+D ++ GYP+S +L + E V + D +KA IC+++AEAD+CL+DG +E LQLLD+AS R+ C+
Sbjct: 60 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEERLNLDAEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGVIPQEIVKAFLVTCKSGNFDVANKEVNDIIAEGYPVSQMLYQLLELVVEADDVSDEQKARICKKLAEADKCLVDGADEYLQLLDVASNTMRALCN 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13993.3111.1 >prot_Ecto-sp13_S_contig13993.3111.1 ID=prot_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQback to top mRNA from alignment at Ecto-sp13_S_contig13993:3..3302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13993.3111.1 ID=mRNA_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13993:3..3302+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13993:3..3302+ >mRNA_Ecto-sp13_S_contig13993.3111.1 ID=mRNA_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13993:3..3302+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |