mRNA_Ecto-sp13_S_contig13993.3111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13993.3111.1
Unique NamemRNA_Ecto-sp13_S_contig13993.3111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6H5JEB4_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB4_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 9.370e-140
Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 1
Query:    1 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 630
            TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSY+KIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDH KADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ
Sbjct:  145 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYHKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHNKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCSQ 354          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A836CA10_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA10_9STRA)

HSP 1 Score: 229 bits (583), Expect = 4.550e-71
Identity = 119/207 (57.49%), Postives = 150/207 (72.46%), Query Frame = 1
Query:    1 TMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGA--EVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAAR 615
            TMTPDAQ+ALRRTMETY+ VTRFCLICNYVTRIIEPLASRCAKFRF AL    ML RL +I+  E V I+A G QA++ L+GGDMRKAVT +QSA Q Y G+  E+T E L +++G++   + + +W A++SG +  +  AVD FM  G PLS+LL  + E T+AD  IPD  KA IC++I+EAD  L+ G NEELQLLD+     R
Sbjct:  139 TMTPDAQAALRRTMETYTKVTRFCLICNYVTRIIEPLASRCAKFRFRALSNETMLTRLDHIAAAEHVSISAAGKQAVIGLAGGDMRKAVTTLQSAHQLYGGSGTEITAEALAEVSGRVSPALVEQIWLAVRSGDFRTLTDAVDAFMFEGSPLSSLLTTLLEDTLADDAIPDVTKAAICKKISEADYSLLLGANEELQLLDVGGFMMR 345          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A1Y1HK96_KLENI (Replication factor C subunit RFC4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK96_KLENI)

HSP 1 Score: 210 bits (535), Expect = 5.190e-64
Identity = 104/208 (50.00%), Postives = 147/208 (70.67%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETYS VTRFC ICNY++RIIEPLASRCAKFRF  LG+  M DR+ YI REE + +  + L  +  +SGGDMR+A+T +QSAS+ + G+ ++ E ++ ++G +P +V + L ++ +SG Y+K    V D ++ GY +S +L  + +  V    + D +KA IC R+AEAD+CLIDG +E LQLLD+AS   R+ C+
Sbjct:  126 MTEDAQNALRRTMETYSKVTRFCFICNYISRIIEPLASRCAKFRFKPLGREIMTDRIQYICREEGLSLDDEALNTLGKVSGGDMRRAITCLQSASRLF-GSRISSENIISVSGVVPDDVIEKLLTSCRSGDYDKAQGTVTDIIADGYAVSQILSQLHDEVVRAEDVTDEQKARICERVAEADKCLIDGGDEYLQLLDVASNTMRALCN 332          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A9NSN9_PICSI (AAA domain-containing protein n=2 Tax=Pinidae TaxID=3313 RepID=A9NSN9_PICSI)

HSP 1 Score: 199 bits (506), Expect = 1.160e-59
Identity = 103/208 (49.52%), Postives = 143/208 (68.75%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETYS VTRFC ICNYV+RIIEPLASRCAKFRF  L +  M  R+ +I +EE V + +D L  +  +S GD+R+A+T +QSA++ Y G+ ++   L+ ++G +P EV  +L+ A K+G ++     V D ++ G+P S +   + +  V  T I D  KA I +R+AEAD+CLIDG +E LQLLD+AS A RS C+
Sbjct:  126 MTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTMLSSISEGDLRRAITYLQSAARLY-GSSISSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCN 332          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: B7FK39_MEDTR (Putative DNA polymerase III, subunit gamma/ tau, P-loop containing nucleoside triphosphate hydrolase n=10 Tax=Fabaceae TaxID=3803 RepID=B7FK39_MEDTR)

HSP 1 Score: 198 bits (504), Expect = 2.320e-59
Identity = 99/208 (47.60%), Postives = 150/208 (72.12%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M  R+ YI +EE + + A+GL  + ++S GD+R+A+T +QSA++ + G+ ++ + L+ ++G +PAEV +AL  A +SG+++     V++F++ GYP+S +L  + EA V +  I D +KA I +++ EAD+CL+DG +E LQLLD+ S   ++ C+
Sbjct:  127 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIQALCN 333          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: W1NMK0_AMBTC (AAA domain-containing protein (Fragment) n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NMK0_AMBTC)

HSP 1 Score: 198 bits (503), Expect = 3.460e-59
Identity = 102/208 (49.04%), Postives = 146/208 (70.19%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRT+ETYS VTRFC ICNYV+RIIEPLASRCAKFRF  L +  M  R+S+I R+E + + ++ L  +  +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP +V ++  SA +SGS+ K    V++  + GYP+S LL  + +  V  T I D +KA I  RIAEAD+ LIDG +E LQLLD+AS   R+ C+
Sbjct:  128 MTEDAQNALRRTLETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRISHICRQESLNLDSEALATLSSISDGDLRRAITYLQSAARLF-GSSISAKNLISVSGVIPQDVVESFLSACRSGSFEKANKEVENITAEGYPVSQLLSQLFDMVVGTTDISDEQKARIFNRIAEADKYLIDGADEYLQLLDVASNTMRAICN 334          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A388K568_CHABU (AAA domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K568_CHABU)

HSP 1 Score: 196 bits (499), Expect = 1.240e-58
Identity = 102/208 (49.04%), Postives = 144/208 (69.23%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETY+ VTRFC ICNY++RIIEPLASRCAKFRF  L    M+ R+SYI  +E + +  + +  +  ++ GDMR+A+T++QSAS+ Y    +  ++L +++G +P EV   L +  KSG +++  AAV +  + GYP+S +L  MQ+  V    + D +KA IC RIAEAD+CLIDG +E LQLLD+AS   R+ C+
Sbjct:  123 MTEDAQNALRRTMETYTKVTRFCFICNYISRIIEPLASRCAKFRFKPLVSDIMVKRISYICDQEGLTLQPEAMDTLCRIADGDMRRAITSLQSASRRYGHCLMKKDIL-NVSGVVPDEVVADLLTTCKSGVFDRAQAAVTNVAAEGYPVSQILAQMQDRAVVAQDMTDEQKARICLRIAEADKCLIDGADEFLQLLDVASCTMRALCN 329          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A6P6US56_COFAR (replication factor C subunit 2 isoform X3 n=2 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6US56_COFAR)

HSP 1 Score: 194 bits (492), Expect = 2.340e-58
Identity = 97/208 (46.63%), Postives = 146/208 (70.19%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M +R+ YI +EE + + +D L  +  +S GD+R+A+T +QSA++ + G+ ++   L+ ++G IP +V  AL+SA +SG+++     V + ++ GYP+S +L  + +  V    I D +KA IC+++ EAD+CL+DG +E LQLLD+AS   ++ C+
Sbjct:   59 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEDIMSNRILYICQEEGLSLDSDALATLSSISQGDLRRAITYLQSAARLF-GSSISSRDLISVSGVIPEDVVQALYSACRSGNFDLADKEVKNVIAEGYPVSQMLSQLFDLVVEADDISDEQKARICKKLGEADKCLVDGADEYLQLLDVASKTMQALCN 265          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: A0A485KYI3_9STRA (Aste57867_13395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYI3_9STRA)

HSP 1 Score: 195 bits (495), Expect = 3.860e-58
Identity = 102/205 (49.76%), Postives = 142/205 (69.27%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARS 618
            MT DAQSALRR ME YS VTRFCLICNYV+RIIEP+ASRCAKFR+  L + +M  R+ ++S EE V I+ D +  ++++SGGD+RKA+  +QSA+Q   G E+T + ++ IAG  P E+ D LW  +   SY+K+   VDD + SG+P+ T+L  + +  V   ++   KKA +C RIAEAD+ L DG +E +QL+D+AS   RS
Sbjct:  122 MTNDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRYQPLEKLSMTARIHHVSAEEQVAISDDAVTTLLEVSGGDLRKAINYLQSANQLN-GDEITQDDILAIAGVAPKELFDKLWQHVAKNSYDKLKDEVDDIIYSGFPVLTILHQLTDEVVQHPSMNQFKKAKVCLRIAEADKKLGDGASEYMQLMDVASFLMRS 325          
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Match: UPI001B7DA897 (replication factor C subunit 2 isoform X4 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7DA897)

HSP 1 Score: 193 bits (490), Expect = 4.830e-58
Identity = 97/208 (46.63%), Postives = 144/208 (69.23%), Query Frame = 1
Query:    4 MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLASVAARSCCS 627
            MT DAQ+ALRRTMETYS VTRF  ICNY++RIIEPLASRCAKFRF  L +  M  R+ +I +EE + + A+ L  +  +S GD+R+A+T +QSA++ + G+ ++ + L+ ++G IP E+  A     KSG+++     V+D ++ GYP+S +L  + E  V    + D +KA IC+++AEAD+CL+DG +E LQLLD+AS   R+ C+
Sbjct:   60 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEERLNLDAEALSTLSSISQGDLRRAITYLQSAARLF-GSSISSKDLISVSGVIPQEIVKAFLVTCKSGNFDVANKEVNDIIAEGYPVSQMLYQLLELVVEADDVSDEQKARICKKLAEADKCLVDGADEYLQLLDVASNTMRALCN 266          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13993.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEB4_9PHAE9.370e-14099.05AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CA10_9STRA4.550e-7157.49P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y1HK96_KLENI5.190e-6450.00Replication factor C subunit RFC4 n=1 Tax=Klebsorm... [more]
A9NSN9_PICSI1.160e-5949.52AAA domain-containing protein n=2 Tax=Pinidae TaxI... [more]
B7FK39_MEDTR2.320e-5947.60Putative DNA polymerase III, subunit gamma/ tau, P... [more]
W1NMK0_AMBTC3.460e-5949.04AAA domain-containing protein (Fragment) n=3 Tax=A... [more]
A0A388K568_CHABU1.240e-5849.04AAA domain-containing protein n=1 Tax=Chara brauni... [more]
A0A6P6US56_COFAR2.340e-5846.63replication factor C subunit 2 isoform X3 n=2 Tax=... [more]
A0A485KYI3_9STRA3.860e-5849.76Aste57867_13395 protein n=1 Tax=Aphanomyces stella... [more]
UPI001B7DA8974.830e-5846.63replication factor C subunit 2 isoform X4 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13993contigEcto-sp13_S_contig13993:3..3302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score404.8
Seed ortholog evalue2.4e-110
Seed eggNOG ortholog2880.D8LT29
Preferred nameRFC4
Model size633
KEGG koko:K10755,ko:K14015
KEGG Pathwayko03030,ko03420,ko03430,ko04141,map03030,map03420,map03430,map04141
KEGG ModuleM00289,M00295,M00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0019985,GO:0022402,GO:0022616,GO:0030163,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Exons6
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0989@2759
Cds size630
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13993.3111.1prot_Ecto-sp13_S_contig13993.3111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13993 6..3302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.6412394-UTR-Ecto-sp13_S_contig13993:2..51681462746.6412394-UTR-Ecto-sp13_S_contig13993:2..5Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13993 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.6536436-CDS-Ecto-sp13_S_contig13993:5..591681462746.6536436-CDS-Ecto-sp13_S_contig13993:5..59Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 6..59 +
1681462746.662189-CDS-Ecto-sp13_S_contig13993:375..5161681462746.662189-CDS-Ecto-sp13_S_contig13993:375..516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 376..516 +
1681462746.6726487-CDS-Ecto-sp13_S_contig13993:1491..16021681462746.6726487-CDS-Ecto-sp13_S_contig13993:1491..1602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 1492..1602 +
1681462746.6872752-CDS-Ecto-sp13_S_contig13993:2065..21671681462746.6872752-CDS-Ecto-sp13_S_contig13993:2065..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 2066..2167 +
1681462746.6999412-CDS-Ecto-sp13_S_contig13993:2670..27331681462746.6999412-CDS-Ecto-sp13_S_contig13993:2670..2733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 2671..2733 +
1681462746.7098973-CDS-Ecto-sp13_S_contig13993:3143..33021681462746.7098973-CDS-Ecto-sp13_S_contig13993:3143..3302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13993 3144..3302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13993.3111.1

>prot_Ecto-sp13_S_contig13993.3111.1 ID=prot_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQ
GAMLDRLSYISREEDVKITADGLQAIVDLSGGDMRKAVTAMQSASQFYAG
AEVTPEVLVDIAGKIPAEVKDALWSAIKSGSYNKIVAAVDDFMSSGYPLS
TLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNEELQLLDLAS
VAARSCCSQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig13993:3..3302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13993.3111.1 ID=mRNA_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13993:3..3302+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATGACGCCGGACGCGCAGTCGGCGCTCCGGCGTACGATGGAAACCTA CTCCACGGTGAGAAAGCGGGTGGGGCGGTGTTCTCATGTAAACATACTGC TTAGTCGTTAGATCATTGTCCTCGCGTCCCAAGAATTCGGTTGGGGGGGA GAGGTTGAGGTACAGACACTTCCGCTGTGCAACAGATAAACAGGAGAGAG AGAGAGAGAGAGGGAGAGGGAGAGGGAGAGAGGAAGTTGGGGTGGGGGTA TCGACAGAGATTGAGATCCAATATATTGCCTTTTTTTTCGGAAGGTGAAC AGGAGAGAGAGACTCGCAAAACAACGATACCCCCTCCCCCCCTCGTTGTG CCGGGCCCCCTGCTGTTCCGCAGGTGACGCGGTTCTGCCTGATCTGCAAC TACGTGACCCGAATAATCGAGCCCTTGGCGTCGAGGTGCGCGAAGTTCCG GTTCAGCGCGCTAGGCCAGGGGGCGATGTTGGATCGGCTCAGCTATATAT CTCGGGAGGAGGACGTGAGTGCTGTTTATATTTATAGAGAATGCTACATT CAAACACAGGAAGACTACCCGGTCTTGACATAACCACGGTAGTAGTCGAA GGGGATATATTGTTTGTGCATCTGTTCCTTTGGTGTTTCCCCAGCTCCAG CTCTACAACCCGTCGTGATCGTTGGTCGGGGTGACAAGTTCGATGAAGTC ACCCCGCGCGGAGCAAGAGTCAGCTGGGACGAAAGGAGCTTCGATGGTGG CTGCTGACCCAATGGCACGCGACGGCGTACTCGATGAGGGCTGACGTTGC GTCCTTATTGCGAAGCGCACGGGTGGTCATTTGTGAGGTTTTTACTCTTT TGTGTCCAACATGTACCTTGCATGGGGCAATCCTACAATTTGGCCACCGG AAAAAAACGCATTCCCGACGAAGAGGTTTGTACGGAAAACGAGCGTTGAG GGCGGTAGAGGTCAGAACGCTCTTCGGTGCCAAGACAGCACAAACAGCAG AAAAGGCCGAGAGTTGTGGGGTATCGCTGTCGATTTATGGTTTTCCGCGA CCGTGACTGTTGTTGGAACGCGGCGGGCCAGTCGCTCCATTTTATTCTCC GCCGCAAGTATTTCGTTCGAAACAGCTACAGCAGCCTGTCCATTTTGCGC GTCTTCCTTGGTGTCAAGTGTAGAGGCACGGCGACTCTCCTATTCTTCTG CTGACACCCTGCTATCCTTCCCAATTGCACATTTTCGCTGGCTGAAAATA TATGTTGGCACGGCGCTTCTCCTATCCTTCTGCTACCCCCCCCGAAAATC CTTCTTGACGTGCTCCTCGATGAACATACCATGCCACAGTTTTTTTGTTT TTTCACCACCGCCATTCCCGTGAAACATCTGCCGCATGAAAAGACTTAGA CGACACACGTCGCAACGCCCGGGGCAACAGTGTTACCCTTCGTTGATCGA CGTTTAGCGTATTTTCGCTTTTTTTTCCCCCTGCTGCAGGTTAAGATCAC TGCGGACGGCCTGCAAGCCATCGTCGACCTCTCGGGCGGGGACATGAGGA AGGCAGTCACGGCTATGCAGTCGGCGTCGCAGTTTTACGCCGGAGCAGAG GTGCGTGTTGCTGGCCTTGGTGTTGTTGTTGGTATTAGTGGTGGTGGTGT GGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTTATGTTGACATCGT TGTTGTGGTCGTAGTATTTGTGATGTACGGATCTTCTTCGTTGATCTTGG GTGTGTTCAGCCCCCGAGAATGAAAGCGACGGATGGGGACAGGGGTAGCC AGGGAATGATAAATACAACACACACATCTCAGGAGGATACATGAGGACCA TGGTCTCCGCAACGGAACTGGTCAACGGCGTGCAGTTTTTTCCGTTCCTC CAAAGTACCAGGTGCGCAAAGCGCGCCCCGGATTCGTTGGCGTTGTCTCA GTTGGGAGTAGGGACAGTGCTTCGTCCTCCGTGTCGAACCAGCCTGGTGA ACTAAGATGACCCTGTTATCGCCAACGTGAGGAACGTAATGGCTACCCCT CCACCCGCTGCAGGTGACGCCTGAAGTTCTGGTAGACATCGCGGGCAAGA TTCCCGCCGAGGTGAAGGATGCGCTCTGGTCGGCCATCAAGTCCGGCTCG TACAACAAGATTGTGGTAAGCGAGAACAAGCGATGTGTATGCATGAGACG GCGATGTGTGTGCATTATACGGTCGACAGGATGCGGGAGCGCATTGCACG CATTTCGGTTTGCGATGTCGTACGCGTGGCGGCACGAATGTGCGGGGTTC TGGAATGAACTAGTACCGTCCTCAAGGCGTCTTTGCAAATTTTTGCCTTC AGCGCGCGTTACGAGTTGTTGGCGTCGAAGCAACGGAAGCCTCATGGTTT GGAACAGGTTTGGATCGTTAGGGTCACCGCAAATGACCTTCGTCTGCGTT CACCCACCCACTCCCTTCGTTGAGGCCCTTGTCGTCAGGAACATTTTTGG TTTTCATCCGCACCCGGGTTTCATGTCGGGAAAGATCTGAACCAAGTCGG CTTTGCCCGCCGGCTGCCATCGTCCATTCTTCCCTGACCTGCCGATGTTG GTATCCAAGACTATTCTCACTTTGCGACCCCTCTCTCCGCCTCGATTGCC CCCCTCCCTGATGATTAGGCGGCGGTCGACGACTTCATGAGCTCCGGCTA CCCTCTCAGCACGCTACTGGAGGACATGCAGGTGGGTCAGTCACGCCGTG TGACCGTGAGATACACACCGGTTGCTGGGAAACGTACTGGGAATAGGAGG GGAGTGAACAACGGAAATACGTTACACAACGGAAAACACGAGGGAGAGGG AGGGAGGGAGAGAATGAGAGAGAGAGAAGCGTTTGACGAGTTCAGGTGTG GTGGTGTCTGCGTACGAGTTCGGCATACCCGGGTCCGTGGTCAATTTCAG TTCCACCGCGCAGCCACGACCTCGCCACTCATTCTCCGGTTCTCTTGGTG TTTGTCTGTCTGTCTGTCTGTCTGCCTGTCTTTGTCTCTTCCATCTATCT GAAATGCGGCTCAAAATATTTGTGTGTGCGACAACTTCGTGTTCGTTGCG GCAAACTTCGTTGTTCGTTCCTCTCTGTACTACTGCTGTAGGAGGCGACG GTGGCGGACACGACCATTCCCGACCACAAGAAGGCCGACATCTGCAGGCG CATCGCGGAAGCCGACCGCTGCCTGATCGACGGCTGCAACGAGGAACTCC AGCTGCTGGACCTAGCCTCCGTCGCTGCACGAAGTTGCTGTTCCCAGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13993:3..3302+

>mRNA_Ecto-sp13_S_contig13993.3111.1 ID=mRNA_Ecto-sp13_S_contig13993.3111.1|Name=mRNA_Ecto-sp13_S_contig13993.3111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13993:3..3302+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCGGACGCGCAGTCGGCGCTCCGGCGTACGATGGAAACCTACTC
CACGGTGACGCGGTTCTGCCTGATCTGCAACTACGTGACCCGAATAATCG
AGCCCTTGGCGTCGAGGTGCGCGAAGTTCCGGTTCAGCGCGCTAGGCCAG
GGGGCGATGTTGGATCGGCTCAGCTATATATCTCGGGAGGAGGACGTTAA
GATCACTGCGGACGGCCTGCAAGCCATCGTCGACCTCTCGGGCGGGGACA
TGAGGAAGGCAGTCACGGCTATGCAGTCGGCGTCGCAGTTTTACGCCGGA
GCAGAGGTGACGCCTGAAGTTCTGGTAGACATCGCGGGCAAGATTCCCGC
CGAGGTGAAGGATGCGCTCTGGTCGGCCATCAAGTCCGGCTCGTACAACA
AGATTGTGGCGGCGGTCGACGACTTCATGAGCTCCGGCTACCCTCTCAGC
ACGCTACTGGAGGACATGCAGGAGGCGACGGTGGCGGACACGACCATTCC
CGACCACAAGAAGGCCGACATCTGCAGGCGCATCGCGGAAGCCGACCGCT
GCCTGATCGACGGCTGCAACGAGGAACTCCAGCTGCTGGACCTAGCCTCC
GTCGCTGCACGAAGTTGCTGTTCCCAGTAG
back to top