mRNA_Ecto-sp13_S_contig13991.3109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13991.3109.1
Unique NamemRNA_Ecto-sp13_S_contig13991.3109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 942 bits (2434), Expect = 0.000e+0
Identity = 466/478 (97.49%), Postives = 472/478 (98.74%), Query Frame = 1
Query:    1 MSGSALFFECGSDVDLARFLPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSSERA 1434
            MSGSALFF+CGSDVDLARF+PLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPE VTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLK SMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGK+ADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERC+KLFIGKQPGTTAGVEGAFTPDGVMYANVFQI AESAADAVDV+AHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVK PTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDS + A
Sbjct:    1 MSGSALFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSHQSA 478          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 5.890e-90
Identity = 156/275 (56.73%), Postives = 189/275 (68.73%), Query Frame = 1
Query:   43 DLARFLPLVPPVTCPL----------AGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAG-VEGAFTPDGVMYANVFQITAESAADAVDVAAHFLV 834
            D    LP+ P +T P+            SRSI DHNF   +K+ Y+AFEAL Q P+ F S+  GR+ E   IDGCAKI TD+    QF IAR ER VD D  +++LK S+ISKM F  R+R+VLEAAP FG  NR+SN+M+RTARG++A  GSP+ GD GEL++ALGD AITDLS K  +DL+NIY LCF   KGIS +  K+ LVQC Q+LW S    G GERC+KLFIGK  G+TAG VEG FT D VM A+VFQITAES ADAVD+  H LV
Sbjct:   31 DAQNLLPVYPSLTLPIDSLLPRLPRVPSSRSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADLHNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLV 304          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 2.340e-79
Identity = 140/241 (58.09%), Postives = 161/241 (66.80%), Query Frame = 1
Query:  103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAH 825
            SI DH F   +KE Y+AFEAL QHP+ F S+  GR+PE   IDGCAKI TD+    QF IAR ER VD +  +++LK SMISKMVF   +R+VLEAAP FG                    GSP+ GD GEL++ALGD AITDLS KSF DLKNIY LCF   KGIS +  K+ L QC Q+LW   DG   GERC KLFIGK  G+TAGVEG FT DGVM A+VFQITAES ADAVD+  H
Sbjct:   14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFG----------------PTPVGSPEDGDAGELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELADG--EGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVH 236          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 3.210e-77
Identity = 165/371 (44.47%), Postives = 214/371 (57.68%), Query Frame = 1
Query:  340 MISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAG---------------RKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLVPPSLMITDIPCMLA-PIAERLH-----PWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPPS-SATDV----VVDNIYAVYADANFSLPAQPHVNFGALLQRS-----------ARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADD 1341
            MISKMVF +R+R+V+EAAPT    NRISN+M RTARGK+A  G+P+ GD G+L++ALGD AITDLS+K+  DL+NIY LC+                 R  + RF   + L+QC    W S  G G  ERC+++FIGK  G T GVEG F  DGV+YA VFQ+  ESAAD VD+ +H         T +P     P+ +  H     P      G LPR+A+  V L  LQH+GA A+EFPD + V++P   FPSP  + SA+D      V  +YA YA        QPH++F ALLQR+           A    A   D SS +KR   LAE+ L SLH+QG +AMTLFEVV ++  W   A +A  +D
Sbjct:    1 MISKMVFDRRLRWVVEAAPTVSPHNRISNVMHRTARGKLAPEGAPERGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESA-GIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISH-----RQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGVDWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAAPED 365          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.410e-75
Identity = 127/238 (53.36%), Postives = 160/238 (67.23%), Query Frame = 1
Query:   46 LARFLPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGV 759
            +A    L P  + PL    SI DHNFI  +++ Y+AFE LTQHP++F SY +G  PE ++IDGCAK+ +D+   + F  AR ER VD D  HQLLK SMISKMVF  R+R+V EA PTFG  NRISN+M RTARGK    GS +TGD GEL++AL    + DL+ K+  DLKNIY LCF G +GIS +  K+  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV
Sbjct:    1 MATTAVLSPAASVPL----SIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSAETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGV 234          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 6.830e-68
Identity = 157/440 (35.68%), Postives = 212/440 (48.18%), Query Frame = 1
Query:   97 SRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTE--SFPSPPPSSAT---DVVVDNIYAVYADANFSLPAQPHVNFGALLQRSA----RSATAE-VGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKAD----DGGAIPGLVPPD 1374
            ++ I DHNFI  +++ Y+AFE LTQHP++F SY +G  PE ++IDGCAK+ +D+   + F  AR ER VD D  HQLLK SMISKM                                                                                        +  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV+ +++ Q+               +  PS+++TDIPCM+AP AE+  P LL+N G LPR+A G VSLP LQH+GA  +++PD H V++P    +F S   SS     D +  N+Y  +A A  S P QPH++F ALL+ +     R+   +   D SS  KR   LAE  L  LHQQGCYA+ LFEVV  ++ W   A  A        GG   G  PP+
Sbjct:    4 AKLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMSMISKM----------------------------------------------------------------------------------------EDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATA-LSGPVQPHIDFSALLKHAGDVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADPHVHLLQGGRESGGDPPE 354          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.100e-56
Identity = 132/289 (45.67%), Postives = 166/289 (57.44%), Query Frame = 1
Query:  670 GAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSP-------PPSSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSA--RSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEG----GTNDTSSDHEMDDSSERAMDDLSLSELCSISQFSEKVLR 1497
            G GERC+KLF+GK  GTTAGVEG FT DGV     FQ+T ESAAD VD+ AH LV P L+ITDIPC + PIAERL P LL++ G LPRDA+G V L  LQH+GAHA+EFPDEH VK+P   FP+        P                  A  +   QPHV+F +LL+R+A  +     V D SS   R   LAE+ L  LH++G YAMTL+EVV ++  W      A  +  G  PG V   EG    G ++T    E+ +        LS SEL +I+ + + VLR
Sbjct:    5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPE--GEAPGAVAGAEGEGGRGGDNTPPLREISE--------LSRSELATITSYLKGVLR 283          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.380e-54
Identity = 95/155 (61.29%), Postives = 115/155 (74.19%), Query Frame = 1
Query:  103 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNI 567
            SI DHNF   +K+ Y+AFEAL QHP+ F S+  GR+PE   IDGCAKI TD+    QF  AR ER VD D  +++LK SMISKMVF  R+R+VLEAAP  G  NR+SN+M RTARG++A  GSP+ GD GEL++ALGD AITDLS KS +DLKNI
Sbjct:   14 SIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAITDLSDKSVSDLKNI 168          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.860e-50
Identity = 91/166 (54.82%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  337 SMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLV 834
            SMISKMVF  R+R+V EA PTFG  NRISN+M RTARGK    GSP+TGD GEL++AL    + DL+ K+  DLKNIY LCF G +GIS +  K+  + CFQ+LW    G    +RC+K+FI +  G TAGVEG FTPDGV+ +++ Q+T+ES AD VD   H  V
Sbjct:    2 SMISKMVFRTRLRWVTEAPPTFGRRNRISNVMLRTARGKPPPVGSPETGDAGELLRALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAV 167          
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.920e-47
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 1
Query:  337 SMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVAAHFLV 834
            SMI KM+F  R+R+VLEAAPTFG  NR+SN+M RTARG++A  GSP+ GD GEL++ALGD A+TDLS KS                        + LVQC Q+LW S    G  ERC+KLFIGK  G+TAGVEG FT DGVM A+VFQITAES ADAVD+  H LV
Sbjct:    2 SMIYKMIFNARLRWVLEAAPTFGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRALGDGAVTDLSDKS------------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLV 143          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13991.3109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LKH0_ECTSI0.000e+097.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB28_9PHAE5.890e-9056.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL5_9PHAE2.340e-7958.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN3_9PHAE3.210e-7744.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB33_9PHAE1.410e-7553.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE6.830e-6835.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3W5_9PHAE1.100e-5645.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTI3_9PHAE2.380e-5461.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY55_9PHAE1.860e-5054.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL59_9PHAE1.920e-4757.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13991contigEcto-sp13_S_contig13991:587..3091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1498
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_002930.1
Cds size1497
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.475995-CDS-Ecto-sp13_S_contig13991:586..12521681462746.475995-CDS-Ecto-sp13_S_contig13991:586..1252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13991 587..1252 -
1681462746.4850717-CDS-Ecto-sp13_S_contig13991:2102..23281681462746.4850717-CDS-Ecto-sp13_S_contig13991:2102..2328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13991 2103..2328 -
1681462746.4955585-CDS-Ecto-sp13_S_contig13991:2486..30911681462746.4955585-CDS-Ecto-sp13_S_contig13991:2486..3091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13991 2487..3091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13991.3109.1prot_Ecto-sp13_S_contig13991.3109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13991 587..3091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13991.3109.1

>prot_Ecto-sp13_S_contig13991.3109.1 ID=prot_Ecto-sp13_S_contig13991.3109.1|Name=mRNA_Ecto-sp13_S_contig13991.3109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=499bp
MSGSALFFECGSDVDLARFLPLVPPVTCPLAGSRSIADHNFIETLKECYY
AFEALTQHPYEFKSYEWGRFPEFVTIDGCAKINTDNTDTSQFQIARTERH
VDTDHQHQLLKFSMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARG
KVADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGI
SRFRNKDALVQCFQELWISRDGGGAGERCAKLFIGKQPGTTAGVEGAFTP
DGVMYANVFQITAESAADAVDVAAHFLVPPSLMITDIPCMLAPIAERLHP
WLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKLPTESFPSPPP
SSATDVVVDNIYAVYADANFSLPAQPHVNFGALLQRSARSATAEVGDTSS
LSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGA
IPGLVPPDEGGTNDTSSDHEMDDSSERAMDDLSLSELCSISQFSEKVLR
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mRNA from alignment at Ecto-sp13_S_contig13991:587..3091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13991.3109.1 ID=mRNA_Ecto-sp13_S_contig13991.3109.1|Name=mRNA_Ecto-sp13_S_contig13991.3109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13991:587..3091- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGAAGCGCCTTGTTTTTCGAGTGTGGTTCAGACGTTGACCTTGC CCGTTTTCTTCCCCTCGTGCCTCCTGTTACATGTCCACTTGCTGGTTCCC GCAGCATCGCTGACCACAATTTTATCGAGACCCTAAAGGAATGCTACTAC GCATTCGAAGCCCTGACACAACACCCGTACGAGTTCAAGAGCTACGAGTG GGGACGCTTCCCGGAGTTCGTGACAATCGACGGGTGCGCGAAAATCAACA CGGACAACACAGACACATCCCAGTTCCAGATCGCTCGGACGGAAAGGCAC GTGGACACTGATCACCAGCACCAGCTGCTGAAGTTCTCGATGATATCGAA GATGGTGTTCCCCAAGCGTGTCCGCTTCGTGCTGGAGGCTGCGCCAACAT TCGGATTTTCAAACCGTATTTCGAACCTCATGTTCCGCACGGCTCGGGGC AAGGTGGCGGATCCAGGATCTCCGCAGACCGGAGACTTGGGGGAGCTTGT GAAAGCACTTGGTGACGACGCCATCACCGACCTCTCAAGCAAGTCTTTCG CTGACCTCAAGAACATCTACACACTCTGCTTCGCCGGTCGGAAGGGTATT AGCAGGTCCGTGCCGGTGTAGGCAATGTCCATACCAATCATGCGACGTGT GTGGAGGCGAACCGTTGTGCGTTTGTGGCCACTACGCTACGGTGACATGA CTACTTGAATGCTACGCTCTTTGACTTCCATGCTCGCTTCCATACGTGGA TATCTCGATCTAGGTTCAGGAACAAGGATGCGCTGGTCCAGTGCTTCCAA GAGCTCTGGATTTCCAGAGATGGGGGGGGTGCGGGGGAGCGATGCGCGAA ACTGTTCATTGGCAAACAACCGGGGACGACGGCAGGAGTGGAAGGCGCCT TTACTCCTGACGGAGTAATGTACGCTAACGTCTTCCAGATCACGGCGGAG AGCGCTGCGGACGCGGTAGATGTCGCAGCGCACTTCTTGGTGAGCTGCTG GAAGTGACCGGATAGAGAAAGTACCCTGATGCGAAATCAGTAGCTTCGCG TCTGCTACATACACCATTGTTTCCTCTCCGTCACGTCCCCTTTCCCTATC CTAACCCGGACGCACCCCGGAGCTGAGTCCTCCGTGGGGCATATCCTGTG TTGCTGTACCTTTCTGTTTTTCTTAAATGTTCGGATTTCATCTTCTTTTT CTTACCGTGACATTCAGCCTTTACGCTCGCGACTATTGGTCATTGAGGAG CGTTCATCCATGTCCGCTAACGTCACAGCACCCAGTAAATATTTGTGCTC GTGTACAGGGCAGGTTGTTTCTAAGGATGACCACGACGGGCTATGCCCCC CCGTCCCCCAACCCGCCCACGACATGAGCTCGAGGGTGCGAAAGAGGTGG CGACTTGAGCGAGTCGCCGCATTATTCATGTGTCCGACATGTCGCCTGTT TCAACGTAGGTTGTAGGTTGTGGTTTTGTGGGTGGTGGTGGACACCACTT GTCTGCTGCAAACGTAGACCTTGTTGCCCCATCTCGCAGTGACTCCACAA ACCCTATCGACAATACCAAACAAAAAACGGAGGGGTAGAAGTTAATTTCT CAACTTGACTCACCGACAACATCGACAACGTGCCATGATCAGCCTCACCT AGAGTATATCCGGGACCATGTTGCAGAACCGCCGGGGGAGAGCATCTTCT CCCCCAAGGACGGCGTGAAGCATGTTTGCCGGCAAGCGTGGAAATGTTGG AAGTACGGAAACTCAAGTGCATGCGTTGTTCTGCAACAATGTGCCTAAAC AACGTGCTATTCCTGCGTTTGTCGTCGCTGGCTGCCAAGGTACCACCAAG CCTGATGATCACAGATATTCCATGCATGCTGGCGCCGATCGCGGAAAGAC TACACCCCTGGCTACTGGAAAATGAAGGCCGACTGCCTCGGGATGCCGAC GGCGTTGTGTCCTTGCCGGCACTGCAGCACCTCGGTGCCCATGCTCACGA GTTTCCAGATGAGCACAGCGTGAAGTTGCCAACGGAGTCGTTCCCATCTC CTCCTCCATCATCGGCAACGGACGTGGTTGTTGACAACATCTACGCGGTC TACGCCGACGCGAATTTTTCCCTTCCCGCCCAACCGCATGTCAACTTCGG CGCCCTCCTTCAACGTTCAGCGAGGAGTGCCACTGCTGAGGTTGGTGACA CTTCGTCTTTATCCAAGCGCTTCTGCACCCTGGCCGAGAACCAGCTCATC TCTCTTCACCAGCAAGGGTGCTACGCCATGACTCTCTTCGAGGTTGTGGC TGTGTTCTCAGCTTGGCTTCATCGTGCAGTCAACGCGAAGGCGGACGACG GAGGGGCGATCCCAGGCCTCGTCCCACCGGATGAGGGGGGAACGAACGAT ACTTCTTCAGACCACGAGATGGACGACTCATCAGAGCGCGCGATGGATGA CTTGTCGCTGTCCGAGCTCTGCTCAATCTCCCAATTCTCCGAGAAAGTTC TCCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13991:587..3091-

>mRNA_Ecto-sp13_S_contig13991.3109.1 ID=mRNA_Ecto-sp13_S_contig13991.3109.1|Name=mRNA_Ecto-sp13_S_contig13991.3109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13991:587..3091- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGAAGCGCCTTGTTTTTCGAGTGTGGTTCAGACGTTGACCTTGC
CCGTTTTCTTCCCCTCGTGCCTCCTGTTACATGTCCACTTGCTGGTTCCC
GCAGCATCGCTGACCACAATTTTATCGAGACCCTAAAGGAATGCTACTAC
GCATTCGAAGCCCTGACACAACACCCGTACGAGTTCAAGAGCTACGAGTG
GGGACGCTTCCCGGAGTTCGTGACAATCGACGGGTGCGCGAAAATCAACA
CGGACAACACAGACACATCCCAGTTCCAGATCGCTCGGACGGAAAGGCAC
GTGGACACTGATCACCAGCACCAGCTGCTGAAGTTCTCGATGATATCGAA
GATGGTGTTCCCCAAGCGTGTCCGCTTCGTGCTGGAGGCTGCGCCAACAT
TCGGATTTTCAAACCGTATTTCGAACCTCATGTTCCGCACGGCTCGGGGC
AAGGTGGCGGATCCAGGATCTCCGCAGACCGGAGACTTGGGGGAGCTTGT
GAAAGCACTTGGTGACGACGCCATCACCGACCTCTCAAGCAAGTCTTTCG
CTGACCTCAAGAACATCTACACACTCTGCTTCGCCGGTCGGAAGGGTATT
AGCAGGTTCAGGAACAAGGATGCGCTGGTCCAGTGCTTCCAAGAGCTCTG
GATTTCCAGAGATGGGGGGGGTGCGGGGGAGCGATGCGCGAAACTGTTCA
TTGGCAAACAACCGGGGACGACGGCAGGAGTGGAAGGCGCCTTTACTCCT
GACGGAGTAATGTACGCTAACGTCTTCCAGATCACGGCGGAGAGCGCTGC
GGACGCGGTAGATGTCGCAGCGCACTTCTTGGTACCACCAAGCCTGATGA
TCACAGATATTCCATGCATGCTGGCGCCGATCGCGGAAAGACTACACCCC
TGGCTACTGGAAAATGAAGGCCGACTGCCTCGGGATGCCGACGGCGTTGT
GTCCTTGCCGGCACTGCAGCACCTCGGTGCCCATGCTCACGAGTTTCCAG
ATGAGCACAGCGTGAAGTTGCCAACGGAGTCGTTCCCATCTCCTCCTCCA
TCATCGGCAACGGACGTGGTTGTTGACAACATCTACGCGGTCTACGCCGA
CGCGAATTTTTCCCTTCCCGCCCAACCGCATGTCAACTTCGGCGCCCTCC
TTCAACGTTCAGCGAGGAGTGCCACTGCTGAGGTTGGTGACACTTCGTCT
TTATCCAAGCGCTTCTGCACCCTGGCCGAGAACCAGCTCATCTCTCTTCA
CCAGCAAGGGTGCTACGCCATGACTCTCTTCGAGGTTGTGGCTGTGTTCT
CAGCTTGGCTTCATCGTGCAGTCAACGCGAAGGCGGACGACGGAGGGGCG
ATCCCAGGCCTCGTCCCACCGGATGAGGGGGGAACGAACGATACTTCTTC
AGACCACGAGATGGACGACTCATCAGAGCGCGCGATGGATGACTTGTCGC
TGTCCGAGCTCTGCTCAATCTCCCAATTCTCCGAGAAAGTTCTCCGA
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