mRNA_Ecto-sp13_S_contig10306.310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: D7G3G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G6_ECTSI) HSP 1 Score: 291 bits (746), Expect = 6.490e-93 Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 1 Query: 1 MWFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 594
M FGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV
Sbjct: 91 MLFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 288
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7S3Y1M0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1M0_HETAK) HSP 1 Score: 130 bits (326), Expect = 1.220e-32 Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 1 Query: 124 WTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 594
WT +++ +ATASDDKLIK++D+ TG+E + EGH NYVFCVNFNNPQ NLLVSGSXXXXXXXXXXXXXXXXXXXXXXX N DGT + XXXXXXXXXXXXXXXXXXXXXIFAEGNP VS+ F+PNGK++LA TLD ++RLWQ + +KCV
Sbjct: 1 WTADAQYVATASDDKLIKLWDLHTGRESATFEGHSNYVFCVNFNNPQTNLLVSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDGTTLXXXXXXXXXXXXXXXXXXXXXXIFAEGNPPVSYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCV 157
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A836C9R4_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R4_9STRA) HSP 1 Score: 129 bits (324), Expect = 7.020e-31 Identity = 96/191 (50.26%), Postives = 127/191 (66.49%), Query Frame = 1 Query: 31 AADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHD---TKCV 594
AAD TV+++ +G +L GH QG+SD+AWT++SR +ATASDDKL+K++DVETGQ + S GH ++VFC NF+ + +LVSG XXXXXXXXXXXXXXXXXXXXXXX DG+ +V IFAEGNP+V F+T++PN +++LAGTLD +RLW +G TKC+
Sbjct: 61 AADLTVRLYSW-DGVFKASLNGHTQGISDVAWTQDSRYVATASDDKLLKVWDVETGQCLHSYAGHSHHVFCCNFDMRGSAMLVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGSCIVSASHDGLIRIWDTTTGNCLKTIFAEGNPAVCFATYTPNSEFILAGTLDHRIRLWTVGTTGTPTKCM 250
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A1Z5JW27_FISSO (COMPASS component SWD3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW27_FISSO) HSP 1 Score: 115 bits (288), Expect = 1.220e-26 Identity = 109/196 (55.61%), Postives = 140/196 (71.43%), Query Frame = 1 Query: 25 ATAADKTVQIWE----TGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGH--DTKCV 594
+ +AD T +IW+ + K + T TGHA+G++ ++W + +ATASDD+ ++++D T + + GH ++VFCV+ N N+LVSG XXXXXXXXXXXXXXXXXXXXXX +PVTA +F DGT V XXXXXXXXXXXXXXXXXXXXI+A GNP VS ++PNGKY+LAGTLD LRLW I +CV
Sbjct: 50 SASADGTAKIWDISLSSSQLKPLGTCTGHARGINQVSWNRAAPFLATASDDRTVRLWDAVTAEALVEFRGHSSFVFCVDQTN---NMLVSGXXXXXXXXXXXXXXXXXXXXXXXSDPVTAVSFGRDGTTVASXXXXXXXXXXXXXXXXXXXXIYAAGNPPVSTLRYAPNGKYLLAGTLDSVLRLWPISRTASNQCV 242
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: B7GA07_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA07_PHATC) HSP 1 Score: 105 bits (263), Expect = 5.900e-23 Identity = 96/173 (55.49%), Postives = 120/173 (69.36%), Query Frame = 1 Query: 79 INTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGH--DTKC 591
+ T GH++G++++ W S +ATASDDK I+++D TG + GH+N+VFCV+ + ++ XXXXXXXXXXXXXXXX +PVTA +FN DGT V XXXXXXXXXXXXXXXXXXXXI+A NP VS T+SPNGKYVLAGTLD LRLW + +KC
Sbjct: 109 VVTCLGHSRGINEVCWNPTSPLLATASDDKTIRVWDAVTGDALVEFRGHDNFVFCVD---QKQSMXXXXXXXXXXXXXXXXXXXXXSTLPAHSDPVTAVSFNRDGTCVCSXXXXXXXXXXXXXXXXXXXXIYAAKNPPVSHITYSPNGKYVLAGTLDSMLRLWPVNRIGSSKC 278
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A8H7IKL4_9AGAM (WD domain, G-beta repeat n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7IKL4_9AGAM) HSP 1 Score: 99.8 bits (247), Expect = 6.770e-21 Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1 Query: 31 AADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGS 288
AAD ++IW + NG LI TL GH +GLSD+AW+ +SR +A+ASDDK ++IF +ET + + GH NYVFCVN+ NP +NL+VSGS
Sbjct: 68 AADGLIKIWSSYNGNLIRTLEGHQEGLSDVAWSGDSRYVASASDDKTVRIFTLET-RHPECFRGHTNYVFCVNY-NPSSNLIVSGS 151
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7S2WJQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJQ5_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.570e-19 Identity = 100/167 (59.88%), Postives = 121/167 (72.46%), Query Frame = 1 Query: 79 INTLTGHAQGLSDLAW-TENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIG 576
+ TL GHA+G++ + W T +ATASDDK +++DV TG+ + ++GH N+VF V F NPQ+NLL+SG XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXX +AEGNP VSF +SPNGK++L+ TLD LRLW G
Sbjct: 124 VQTLIGHARGINHVDWSTRTGEYLATASDDKTCRLWDVSTGEALVELKGHSNFVFSVKF-NPQSNLLLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEGNPPVSFVRYSPNGKFILSATLDGKLRLWNAG 289
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: J3MM93_ORYBR (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=J3MM93_ORYBR) HSP 1 Score: 93.6 bits (231), Expect = 9.160e-19 Identity = 81/199 (40.70%), Postives = 112/199 (56.28%), Query Frame = 1 Query: 25 ATAA-DKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVE------------------TGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRL 564
ATA+ D TV + + I TL GHA G+SD++W+ +S + +ASDD+ ++I+DV + ++ ++GH N+VF NFN N + SG +PVT+ F DG+ +VXXXXXXXXXXXXXXXXXXXX + + P+VSFS FSPNGK++L TLDDSL+L
Sbjct: 29 ATASLDGTVALLSPSSLSAIATLRGHADGVSDISWSTDSFYLCSASDDRTLRIWDVRPVLSGLNPGGGAQPADPNADRCIRVLKGHANFVFSANFNPQTNNTVASGGFDCTVRIWDVKSGRCVRAIDAHSDPVTSVHFIRDGSIIVXXXXXXXXXXXXXXXXXXXXTVIDDKMPAVSFSMFSPNGKFILVATLDDSLKL 227
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7J7IGL8_9RHOD (WD domain protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGL8_9RHOD) HSP 1 Score: 93.6 bits (231), Expect = 1.670e-18 Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 10 GTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENS--------------RKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLL 276
G +++ADKTV++W G+G+L+ L GHAQG+SD+AW+ + R +A+ASDD+ ++++DVE G V EGH NYVFC NF NPQ N+L
Sbjct: 67 GRLLASSSADKTVRLWSAGDGRLVGVLEGHAQGISDVAWSGAAAASDDTVRSSGALTRWLASASDDRTLRLWDVERGVAVHRFEGHSNYVFCCNF-NPQGNVL 168
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: K3ZV67_SETIT (Uncharacterized protein n=9 Tax=Paniceae TaxID=147428 RepID=K3ZV67_SETIT) HSP 1 Score: 92.0 bits (227), Expect = 3.670e-18 Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = 1 Query: 25 ATAA-DKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVET------------GQE--VQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRL 564
ATA+ D TV + + +I L GH G+SDL+W+ S + TASDD+ ++++D+ + G + V+ ++GH N+VF NFN ++ + SG EPVT+ F DG+ + XXXXXXXXXXXXXXXXXXXXX + P+VSFS FSPNGK++L TLDDSL+L
Sbjct: 40 ATASLDGTVALLSPSSLAVIAVLRGHTDGVSDLSWSTESYYLCTASDDRTLRVWDIRSVLAGGAQGAADPGADRCVRVLKGHTNFVFSANFNPQTSSQIASGGFDCTVRIWDVKSGRCNRAIDAHSEPVTSVHFIRDGSIIXXXXXXXXXXXXXXXXXXXXXXXIDDKKPAVSFSMFSPNGKFILVATLDDSLKL 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10306.310.1 >prot_Ecto-sp13_S_contig10306.310.1 ID=prot_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp MWFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIAback to top mRNA from alignment at Ecto-sp13_S_contig10306:1422..5643+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10306.310.1 ID=mRNA_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10306:1422..5643+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10306:1422..5643+ >mRNA_Ecto-sp13_S_contig10306.310.1 ID=mRNA_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10306:1422..5643+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |