mRNA_Ecto-sp13_S_contig10306.310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10306.310.1
Unique NamemRNA_Ecto-sp13_S_contig10306.310.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: D7G3G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G6_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 6.490e-93
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 1 
Query:    1 MWFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 594
            M FGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV
Sbjct:   91 MLFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 288
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7S3Y1M0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1M0_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.220e-32
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 1 
Query:  124 WTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCV 594
            WT +++ +ATASDDKLIK++D+ TG+E  + EGH NYVFCVNFNNPQ NLLVSGSXXXXXXXXXXXXXXXXXXXXXXX        N DGT + XXXXXXXXXXXXXXXXXXXXXIFAEGNP VS+  F+PNGK++LA TLD ++RLWQ  + +KCV
Sbjct:    1 WTADAQYVATASDDKLIKLWDLHTGRESATFEGHSNYVFCVNFNNPQTNLLVSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRDGTTLXXXXXXXXXXXXXXXXXXXXXXIFAEGNPPVSYVRFAPNGKFLLASTLDSTMRLWQTSNPSKCV 157
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A836C9R4_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 7.020e-31
Identity = 96/191 (50.26%), Postives = 127/191 (66.49%), Query Frame = 1 
Query:   31 AADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHD---TKCV 594
            AAD TV+++   +G    +L GH QG+SD+AWT++SR +ATASDDKL+K++DVETGQ + S  GH ++VFC NF+   + +LVSG XXXXXXXXXXXXXXXXXXXXXXX          DG+ +V                     IFAEGNP+V F+T++PN +++LAGTLD  +RLW +G     TKC+
Sbjct:   61 AADLTVRLYSW-DGVFKASLNGHTQGISDVAWTQDSRYVATASDDKLLKVWDVETGQCLHSYAGHSHHVFCCNFDMRGSAMLVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGSCIVSASHDGLIRIWDTTTGNCLKTIFAEGNPAVCFATYTPNSEFILAGTLDHRIRLWTVGTTGTPTKCM 250
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A1Z5JW27_FISSO (COMPASS component SWD3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW27_FISSO)

HSP 1 Score: 115 bits (288), Expect = 1.220e-26
Identity = 109/196 (55.61%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:   25 ATAADKTVQIWE----TGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGH--DTKCV 594
            + +AD T +IW+    +   K + T TGHA+G++ ++W   +  +ATASDD+ ++++D  T + +    GH ++VFCV+  N   N+LVSG XXXXXXXXXXXXXXXXXXXXXX +PVTA +F  DGT V  XXXXXXXXXXXXXXXXXXXXI+A GNP VS   ++PNGKY+LAGTLD  LRLW I      +CV
Sbjct:   50 SASADGTAKIWDISLSSSQLKPLGTCTGHARGINQVSWNRAAPFLATASDDRTVRLWDAVTAEALVEFRGHSSFVFCVDQTN---NMLVSGXXXXXXXXXXXXXXXXXXXXXXXSDPVTAVSFGRDGTTVASXXXXXXXXXXXXXXXXXXXXIYAAGNPPVSTLRYAPNGKYLLAGTLDSVLRLWPISRTASNQCV 242
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: B7GA07_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GA07_PHATC)

HSP 1 Score: 105 bits (263), Expect = 5.900e-23
Identity = 96/173 (55.49%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:   79 INTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGH--DTKC 591
            + T  GH++G++++ W   S  +ATASDDK I+++D  TG  +    GH+N+VFCV+    + ++     XXXXXXXXXXXXXXXX       +PVTA +FN DGT V  XXXXXXXXXXXXXXXXXXXXI+A  NP VS  T+SPNGKYVLAGTLD  LRLW +     +KC
Sbjct:  109 VVTCLGHSRGINEVCWNPTSPLLATASDDKTIRVWDAVTGDALVEFRGHDNFVFCVD---QKQSMXXXXXXXXXXXXXXXXXXXXXSTLPAHSDPVTAVSFNRDGTCVCSXXXXXXXXXXXXXXXXXXXXIYAAKNPPVSHITYSPNGKYVLAGTLDSMLRLWPVNRIGSSKC 278
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A8H7IKL4_9AGAM (WD domain, G-beta repeat n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7IKL4_9AGAM)

HSP 1 Score: 99.8 bits (247), Expect = 6.770e-21
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   31 AADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGS 288
            AAD  ++IW + NG LI TL GH +GLSD+AW+ +SR +A+ASDDK ++IF +ET +  +   GH NYVFCVN+ NP +NL+VSGS
Sbjct:   68 AADGLIKIWSSYNGNLIRTLEGHQEGLSDVAWSGDSRYVASASDDKTVRIFTLET-RHPECFRGHTNYVFCVNY-NPSSNLIVSGS 151
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7S2WJQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJQ5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.570e-19
Identity = 100/167 (59.88%), Postives = 121/167 (72.46%), Query Frame = 1 
Query:   79 INTLTGHAQGLSDLAW-TENSRKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIG 576
            + TL GHA+G++ + W T     +ATASDDK  +++DV TG+ +  ++GH N+VF V F NPQ+NLL+SG XXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXXXX +AEGNP VSF  +SPNGK++L+ TLD  LRLW  G
Sbjct:  124 VQTLIGHARGINHVDWSTRTGEYLATASDDKTCRLWDVSTGEALVELKGHSNFVFSVKF-NPQSNLLLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAEGNPPVSFVRYSPNGKFILSATLDGKLRLWNAG 289
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: J3MM93_ORYBR (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=J3MM93_ORYBR)

HSP 1 Score: 93.6 bits (231), Expect = 9.160e-19
Identity = 81/199 (40.70%), Postives = 112/199 (56.28%), Query Frame = 1 
Query:   25 ATAA-DKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVE------------------TGQEVQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRL 564
            ATA+ D TV +    +   I TL GHA G+SD++W+ +S  + +ASDD+ ++I+DV                     + ++ ++GH N+VF  NFN    N + SG                        +PVT+  F  DG+ +VXXXXXXXXXXXXXXXXXXXX +  +  P+VSFS FSPNGK++L  TLDDSL+L
Sbjct:   29 ATASLDGTVALLSPSSLSAIATLRGHADGVSDISWSTDSFYLCSASDDRTLRIWDVRPVLSGLNPGGGAQPADPNADRCIRVLKGHANFVFSANFNPQTNNTVASGGFDCTVRIWDVKSGRCVRAIDAHSDPVTSVHFIRDGSIIVXXXXXXXXXXXXXXXXXXXXTVIDDKMPAVSFSMFSPNGKFILVATLDDSLKL 227
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: A0A7J7IGL8_9RHOD (WD domain protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGL8_9RHOD)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-18
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 GTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENS--------------RKIATASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLL 276
            G    +++ADKTV++W  G+G+L+  L GHAQG+SD+AW+  +              R +A+ASDD+ ++++DVE G  V   EGH NYVFC NF NPQ N+L
Sbjct:   67 GRLLASSSADKTVRLWSAGDGRLVGVLEGHAQGISDVAWSGAAAASDDTVRSSGALTRWLASASDDRTLRLWDVERGVAVHRFEGHSNYVFCCNF-NPQGNVL 168
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BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Match: K3ZV67_SETIT (Uncharacterized protein n=9 Tax=Paniceae TaxID=147428 RepID=K3ZV67_SETIT)

HSP 1 Score: 92.0 bits (227), Expect = 3.670e-18
Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = 1 
Query:   25 ATAA-DKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIATASDDKLIKIFDVET------------GQE--VQSMEGHENYVFCVNFNNPQANLLVSGSXXXXXXXXXXXXXXXXXXXXXXXEPVTAAAFNADGTGVVXXXXXXXXXXXXXXXXXXXXXIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRL 564
            ATA+ D TV +    +  +I  L GH  G+SDL+W+  S  + TASDD+ ++++D+ +            G +  V+ ++GH N+VF  NFN   ++ + SG                        EPVT+  F  DG+ + XXXXXXXXXXXXXXXXXXXXX   +  P+VSFS FSPNGK++L  TLDDSL+L
Sbjct:   40 ATASLDGTVALLSPSSLAVIAVLRGHTDGVSDLSWSTESYYLCTASDDRTLRVWDIRSVLAGGAQGAADPGADRCVRVLKGHTNFVFSANFNPQTSSQIASGGFDCTVRIWDVKSGRCNRAIDAHSEPVTSVHFIRDGSIIXXXXXXXXXXXXXXXXXXXXXXXIDDKKPAVSFSMFSPNGKFILVATLDDSLKL 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10306.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G6_ECTSI6.490e-9399.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y1M0_HETAK1.220e-3271.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C9R4_9STRA7.020e-3150.26WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1Z5JW27_FISSO1.220e-2655.61COMPASS component SWD3 n=2 Tax=Fistulifera solaris... [more]
B7GA07_PHATC5.900e-2355.49Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8H7IKL4_9AGAM6.770e-2155.81WD domain, G-beta repeat n=1 Tax=Rhizoctonia solan... [more]
A0A7S2WJQ5_9STRA1.570e-1959.88Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
J3MM93_ORYBR9.160e-1940.70Uncharacterized protein n=11 Tax=Oryza TaxID=4527 ... [more]
A0A7J7IGL8_9RHOD1.670e-1844.66WD domain protein n=1 Tax=Cyanidiococcus yangmings... [more]
K3ZV67_SETIT3.670e-1841.54Uncharacterized protein n=9 Tax=Paniceae TaxID=147... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10306contigEcto-sp13_S_contig10306:1422..5643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score295.8
Seed ortholog evalue1.9e-77
Seed eggNOG ortholog2880.D7G3G6
Preferred nameWDR5
Model size759
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000123,GO:0000151,GO:0001501,GO:0001654,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005815,GO:0005856,GO:0005929,GO:0006109,GO:0006111,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007482,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0015630,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0034708,GO:0034968,GO:0035064,GO:0035097,GO:0035216,GO:0035295,GO:0035947,GO:0035948,GO:0036064,GO:0036211,GO:0042054,GO:0042176,GO:0042393,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043412,GO:0043414,GO:0043543,GO:0043687,GO:0043966,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044545,GO:0044665,GO:0044666,GO:0044782,GO:0045595,GO:0045637,GO:0045652,GO:0045722,GO:0045732,GO:0045862,GO:0045893,GO:0045913,GO:0045935,GO:0045944,GO:0048188,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0060255,GO:0060271,GO:0060429,GO:0061136,GO:0061458,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0070925,GO:0071339,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140030,GO:0140034,GO:0140096,GO:1900402,GO:1901564,GO:1901800,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903706,GO:1990234,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001141
Exons7
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Cds size759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10306.310.1prot_Ecto-sp13_S_contig10306.310.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10306 1422..5643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.3299785-CDS-Ecto-sp13_S_contig10306:1421..15261681462522.3299785-CDS-Ecto-sp13_S_contig10306:1421..1526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 1422..1526 +
1681462522.3496583-CDS-Ecto-sp13_S_contig10306:2091..21811681462522.3496583-CDS-Ecto-sp13_S_contig10306:2091..2181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 2092..2181 +
1681462522.3611102-CDS-Ecto-sp13_S_contig10306:3185..32661681462522.3611102-CDS-Ecto-sp13_S_contig10306:3185..3266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 3186..3266 +
1681462522.377376-CDS-Ecto-sp13_S_contig10306:3633..37851681462522.377376-CDS-Ecto-sp13_S_contig10306:3633..3785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 3634..3785 +
1681462522.3863645-CDS-Ecto-sp13_S_contig10306:4533..45991681462522.3863645-CDS-Ecto-sp13_S_contig10306:4533..4599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 4534..4599 +
1681462522.3957164-CDS-Ecto-sp13_S_contig10306:4996..51071681462522.3957164-CDS-Ecto-sp13_S_contig10306:4996..5107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 4997..5107 +
1681462522.4038937-CDS-Ecto-sp13_S_contig10306:5489..56431681462522.4038937-CDS-Ecto-sp13_S_contig10306:5489..5643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10306 5490..5643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10306.310.1

>prot_Ecto-sp13_S_contig10306.310.1 ID=prot_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MWFGTFSGATAADKTVQIWETGNGKLINTLTGHAQGLSDLAWTENSRKIA
TASDDKLIKIFDVETGQEVQSMEGHENYVFCVNFNNPQANLLVSGSFDEK
VKIWDVATGKCLRTMASHSEPVTAAAFNADGTGVVSGSADGLIRLWDSST
GACLKTIFAEGNPSVSFSTFSPNGKYVLAGTLDDSLRLWQIGHDTKCVKT
YKGHVNRRYSVTACFDGNKRVVSGSEDGSIYIWDINSSKSVVQRLQGHSG
EVL
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mRNA from alignment at Ecto-sp13_S_contig10306:1422..5643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10306.310.1 ID=mRNA_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10306:1422..5643+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTTGGCACCTTCTCTGGCGCCACAGCCGCCGACAAAACGGTCCA
GATCTGGGAGACTGGTAACGGCAAGCTCATCAACACGCTCACCGGCCACG
CCCAGGTTAGTGGTGGCGTGAACCTTACGGCGATTCGATGTTTTGTCCAT
ACTCGGGAGAGTAGTACAAGAAGCGGTGTGTAACGGGACCATGGGTAGGT
GCTGTTGCCACTCGATCCCATCAAAGCCGGGCCAAGCATTAGCACTTGGC
TACGATTGAGTGAGGCCCCTGCTTTCGAAATCGGAACCAAGTGGTGGAAT
CTTGGTGCGGAGTGCCCCTCTTAGCTCTTGTCCAACACTTGCATTCTGCC
TGACCTTCGCCAACCATGAGACAGCCACAAAATTCTGCTGCACTGCACCG
AAAAGCTACCAACTGATGCGTTCTCAAGTTTTGCCGTAATGTGGCCTGTG
CCGAAAAGTTGCCTATTTTGAGCCACTGAAAATTGCCGTCCGCCACCTTT
CCGCTGCGGAAAGCACGGCACTGCTGTCTTTCATCCTGACAAGTCCACAA
TGTCACGTGCTGGGACTTTCTCCGCCTGTTCTCTCGGCGCTTCTTACCCC
CCTGTCCCTCATCCGTTGGTGCCCCTTGCACCTATCCTTATCATATCACA
TCGCCGTGCTGTTGATCCAGGGGCTGTCTGACCTCGCATGGACGGAAAAC
AGTCGAAAGATCGCCACGGCCTCTGATGACAAGCTCATCAAGATATTCGA
CGTGGAGACGGTACGGACGAATATTTTTTGAGAAAAAGGTGGTGTGAGCG
CAAGGATAGCATCGGAATACAGTGCGGGGGGGGCTCTGTTTTTGTGCCGG
CTGATCGGTGCCGTTGCCCGGTATTGTGCTGGCCGAATGCCTGGGCATAT
GCCGGCTCTAGATAGGGCACCCCACTGCTGTAGATTGTACGAGTTTCTGA
AAGTAGCATTGACTGGTCGAGCCGACTGGCCAAGGAGATCCGTTCCTTTC
TCTCGCTGAAATGTTATCGCTTTTCGTGGCACACATACTCTTCGGGTGAA
CTGAGACAGAAAGATGTGACTTTGGCGCGATTCAGACCTATGTCCCGAAC
GATAGAGCGTTCGAGGCTATACCACTTGTTCGTGACGAAGCTCAACAAGA
TGCTGGAAACCTTTGATGGCTACTTTAATTATGATGGGGTTGATGGAAGG
AAATGTACTGCGATAGAACGGTTCGTGTGGCTGTTTCACTGGCAACGTGC
TGTTTTTTTTCCGCAGTGTACCATATGGTATTTATGTATATTACACGACA
CGTGCACGGATTTTCAATTTGTTCTTGTCCTGCTCTATTGCGCTTGACCC
ACACCAGGATAAATGGCGTGGTGCGTGAGTGCATCCATCCGTGTTCGCCT
CTCTTATCACGTGGTCGCTTTGTGAGCTGCACTGCAATGCAATGCCGGGA
TGTTGTTGACGTTGTTGTTGATAGGGATGGTGCTGCTACTCTGCTTGTGG
AGCGTCATGAATCTTGCTCATGCTGTGTTCAGTACCGTCCTGTTCCGTCC
TCCTTGTAGTCGCTCCCTTTGCGCTGCAGTGCTGCAGCAAAGTAGTGCAT
TTATTGTACCGCGTGTTTTCTGATGTTCATGTTCGTCATCCCCTCCCCAG
CCCCCCATTCCCACTCTCGCCTTTGCCGCGGTGTTTTCGACGTTTTTTTG
TGCGATTCTTGGCAACGGAAACCTTTTTTTGCGGCCCATCGATGGTCCCT
TCGATGTACTTCAGGGGCAAGAAGTCCAGAGCATGGAGGGCCACGAGAAC
TATGTCTTCTGCGTTAACTTCAACAATCCTCAGGCGAACCTGCTGGTGAG
TCCTATCAGAACGGTCGGAGTCAAGTACCGGGGTTGTAAATCTCAGTTGG
ATGGTTTCCGTTGACGAGGACCTGAAAACAACCCGCGTGGTGGCTCGCGG
GATTTCCTACCTCGAGTGTAAGATGTGTCAAGCTTAGTGTCTCGTCCAAG
CTTGGTTTCACGATTTCGGCTGCTCTTGGTGCGATGCGATGGGATGGGAA
GTACGCGTGTTCCCCCGCGCACGGCTGGTACATATCTCCTGTGGTGTCTC
TCGCCCCGTAAAGCAAGACGATTCGACGGACGCAGGGGTGCTCAAAAGCC
GCGCTGAGTATATGTATCCGTATCGTGTCGCCTCGTATGATTGCCTGACG
TACGTACTGCAGGTGAGCGGGTCCTTCGACGAGAAGGTTAAGATCTGGGA
CGTGGCAACGGGCAAGTGCCTTCGCACGATGGCGTCACACTCGGAGCCCG
TCACGGCCGCCGCCTTCAACGCGGACGGCACCGGAGTGGTATCGGGAAGC
GCGGATGGCCTCATGTAAGCTCCTTTGATGCGTCCTCCCCTAAAGCAGAT
TCTACGAAATACACATGTGTTTTTGAGAAGCATAAGCACTATCAGCGTTG
AACGAGAAAAGGAAAACACCCACACGAGTGTCCTCTCCGAAACCAAGCAT
TGCAAATTGCAATAAAATTGAGTAAATGCACGCAGAGTTTCAAGTATCAT
CCCTCCTTTTTTGTGTGCGTGCGCGAAACTGGACGTTTTCCCGATCGGTT
TGCTGTGCGCATGCGTTCCACATGCTTCTGCCGCGTACCAAGTAGATACC
AAATGGTGTTTGGTTGCTGCTCTCTAGTCGTTGCCTCCCGGGTAAGCTAT
TTTGGTTGCTGCTCTCTACCTAATATCTCACGTGTGCGCGTAAGTGTTTT
TTAGTGTGCCGTTGTGAGCAGGGCCACGTGTCGAGATGCTTTCTCTCGCT
TCTTCTTGTAGACGGGTATTCTATTCTACTTCCCCGCCGGTGTTGTCATT
CGCAATGAGGAAGGTGGTTCCTGTGCTAACCGCGCTGGTGAGGGCCGAGG
CCAGTTAGCGCTAAACCCCTAACCTGTCTGGGCTACCGCGGAGATGACGA
TATTTTGGTGATGTACCGTTGAGGCACCCTCCTAGTGTGTGCAATTTCGC
AGTACCTCTGCCGTTTCTCCACCCTTTGACGCCCCCGCCGAAGTGTTCAT
CCGCGTGCCTCGGTTCTGTTGATACCCTTTTGTCTTTTGTCTTTTGGTCC
TTGTCGCCTCAGCCGTCTGTGGGATAGCAGCACCGGGGCATGTCTCAAGA
CCATCTTCGCCGAGGGTAACCCGTCTGTGTGAGTCACTGTGGTCACACGT
GTTTCGGCAGACAAGAGGAGGGTATTCGTGGACGGTCTTAGCGTGCGTCA
GCAACGCGTTTTCCTGATGGCGCCAGAGAGAAAAGAGCGGTCGTGGTCTT
GCCTGTGCACACAGCAGTGTGCCGTCATGACGTCATCATGATTTCGTTAC
GTTGTCGCATTTGGAGGTTCGGTGTCATTCCAGTTTACTTCCTCGTCTTC
GAAGCACCAACTGAAAGTCGGCAGCCCTCCTTTGTCTCTCTCCCCTCCAC
CTTCTCGCCCCCTCCTTTCTCTCTCTCACACCCCGCACCACTACAGTTGT
CGTCCATTTCCCTTTGGCTGCCGGCTCTCTTTCTCATGTTTTCACGACAC
CATGACCGAAAAACCAATTCTGCAGGTCGTTCTCCACCTTCTCCCCCAAC
GGTAAGTACGTGCTGGCCGGCACGTTGGACGACTCCCTCAGGCTGTGGCA
AATCGGTCACGACACCAAATGCGTCAAGACCTACAAGTGAGTCAGTTTGC
GGTAGGAACGGATAGGAGCTCAACAGAGCAACAAAGGAGAGACCCTAACT
GCTGGGATACCCATGGGTTATTCATGTGTCCCGCCCCCCAAATCACATTT
CTTCGCGTTCTCTGTTCTCTGATTCCCCACCCACGCGTTTTCCCCCCTCT
CTTTTTTTCCCTCTTGTGCTTCATCATTCGTCGGCACTATGTGGCTTGCT
CGTTGTTTGATCGATTTCGCATTCGTTGCCCGTGTTTCCTCCGGCCTCCG
CCACCCGCTGACACATGCACGCAACCATCTTCTCTTTCCCTCTCTCGCAA
TGTTCCGCCGCCCGCCCTGCGGTGATCCGCCGTTTCTCTTTTATTTTTTG
CTCGCGGAACGCCGGCAGGGGACACGTCAATCGGCGATACTCGGTGACGG
CTTGCTTTGACGGCAACAAGCGCGTCGTCAGCGGATCCGAGGACGGGAGC
ATCTACATCTGGGACATCAACAGCAGCAAGTCGGTGGTGCAGAGGCTGCA
GGGGCACAGCGGTGAGGTCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10306:1422..5643+

>mRNA_Ecto-sp13_S_contig10306.310.1 ID=mRNA_Ecto-sp13_S_contig10306.310.1|Name=mRNA_Ecto-sp13_S_contig10306.310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10306:1422..5643+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTTGGCACCTTCTCTGGCGCCACAGCCGCCGACAAAACGGTCCA
GATCTGGGAGACTGGTAACGGCAAGCTCATCAACACGCTCACCGGCCACG
CCCAGGGGCTGTCTGACCTCGCATGGACGGAAAACAGTCGAAAGATCGCC
ACGGCCTCTGATGACAAGCTCATCAAGATATTCGACGTGGAGACGGGGCA
AGAAGTCCAGAGCATGGAGGGCCACGAGAACTATGTCTTCTGCGTTAACT
TCAACAATCCTCAGGCGAACCTGCTGGTGAGCGGGTCCTTCGACGAGAAG
GTTAAGATCTGGGACGTGGCAACGGGCAAGTGCCTTCGCACGATGGCGTC
ACACTCGGAGCCCGTCACGGCCGCCGCCTTCAACGCGGACGGCACCGGAG
TGGTATCGGGAAGCGCGGATGGCCTCATCCGTCTGTGGGATAGCAGCACC
GGGGCATGTCTCAAGACCATCTTCGCCGAGGGTAACCCGTCTGTGTCGTT
CTCCACCTTCTCCCCCAACGGTAAGTACGTGCTGGCCGGCACGTTGGACG
ACTCCCTCAGGCTGTGGCAAATCGGTCACGACACCAAATGCGTCAAGACC
TACAAGGGACACGTCAATCGGCGATACTCGGTGACGGCTTGCTTTGACGG
CAACAAGCGCGTCGTCAGCGGATCCGAGGACGGGAGCATCTACATCTGGG
ACATCAACAGCAGCAAGTCGGTGGTGCAGAGGCTGCAGGGGCACAGCGGT
GAGGTCCTT
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