mRNA_Ecto-sp13_S_contig13942.3080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A6H5KH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH41_9PHAE) HSP 1 Score: 216 bits (550), Expect = 6.950e-63 Identity = 121/175 (69.14%), Postives = 125/175 (71.43%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVR--------------------GGSFLGPATAAI--------------------VAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
TLLRKMLVKLLQRVGTTYVPPRV+AWRYRRGQRSLLQ GG +T + VAEEE+EV VPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR
Sbjct: 221 TLLRKMLVKLLQRVGTTYVPPRVIAWRYRRGQRSLLQAASVEEKPLDRQEGQTVETNGSGGDAEEISTKGVGVARDGASAQEKADVNEVDAVAEEEDEVGVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 395
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI) HSP 1 Score: 214 bits (546), Expect = 5.800e-62 Identity = 125/196 (63.78%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQ-------------------------------------VRGGSFLGPATAA------------------------IVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQ V G G A + +VAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR
Sbjct: 310 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQNLESTPDAASDGGDCCQDEQQAASVEEKPLERQEGETVEAGGGEGDAEESSAGGVGVAQDGPPAQVKVDATEVDVVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 505
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A7S2WC38_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC38_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.090e-47 Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 1
Query: 10 RKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEE--EEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
RK+ +KL+QR G ++PP+VV WRY+RGQRSLL G+ G +A + EE +E+VD+PEE+ED++E LLCGLRDRDT+VRWSAAKGIGRIT RLP ELADDVV VL+LF +E D AWHGGCLALAELAR
Sbjct: 319 RKLTMKLVQRSGLNFLPPKVVKWRYQRGQRSLLH---GAAKGVESAQVELEESEDEDVDIPEEVEDVIEKLLCGLRDRDTIVRWSAAKGIGRITSRLPEELADDVVAYVLELFDVSEGDSAWHGGCLALAELAR 449
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A835ZJS0_9STRA (Tubulin folding cofactor D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS0_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.290e-46 Identity = 90/147 (61.22%), Postives = 105/147 (71.43%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIV------------AEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
TLLRKM+VKL QR+G ++PPRVVAWRY+RGQRSLLQ G ++ E +V EE+E++VE LLCGLRDRDTVVRWSAAKG+GR+T RLP LAD+VV SVLDLF +AE DG WHGGCLALAELAR
Sbjct: 323 TLLRKMVVKLFQRIGLAFLPPRVVAWRYQRGQRSLLQNLAGXXXXXXXXXXXXXXXXXXXXXXEGADDVEFEVAEEVEEVVEQLLCGLRDRDTVVRWSAAKGVGRVTGRLPLALADEVVGSVLDLFSDAESDGGWHGGCLALAELAR 469
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A2H6N9H2_MICLE (Uncharacterized protein (Fragment) n=1 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6N9H2_MICLE) HSP 1 Score: 159 bits (402), Expect = 1.020e-45 Identity = 84/142 (59.15%), Postives = 104/142 (73.24%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSL---LQVRGGSFLGPATAAIVA----EEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
T+LRK+ VKL+QR+G T++ P+V WRY+RG RSL LQ G + T I EEEEE D+P E+E+++E LL GL+D+DT+VRWSAAKG+GR+T RLP+ELADDVV SVLD F E D AWHGGCLALAEL R
Sbjct: 94 TILRKLGVKLVQRLGLTFLKPKVAKWRYQRGFRSLAANLQFSSGGLIPQKTENISIDTGEEEEEEYDIPGEIENVIEQLLIGLKDKDTIVRWSAAKGVGRLTGRLPKELADDVVGSVLDCFSFQETDNAWHGGCLALAELGR 235
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI0018D85098 (tubulin-specific chaperone D-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85098) HSP 1 Score: 165 bits (418), Expect = 9.860e-45 Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVA------EEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
T L K+ +KL+QR+G T++ R WRY+RG RSL G P A V+ +E++E DVPEE+E+++E LL GLRDRDTVVRWSAAKG+GR+T RLPRELAD VV SVL+LF EWDGAWHGGCLALAEL R
Sbjct: 296 TQLHKLAMKLIQRLGLTFLRARTAVWRYQRGSRSLADNLNGQVSVPLAVATVSSQIAPEDEDDEYDVPEEIEEVIEQLLVGLRDRDTVVRWSAAKGVGRLTSRLPRELADQVVESVLELFNLREWDGAWHGGCLALAELGR 436
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A7SMP4_NEMVE (Tubulin-specific chaperone D (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SMP4_NEMVE) HSP 1 Score: 164 bits (416), Expect = 1.830e-44 Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
T+LRK+ VKL+QR+G T++ PR+ +WRY+RG RSL+ G + + +EEE DVPEE+ED+VE LL GL+D+DTVVRWSAAKGIGRIT RLP+ELAD+VV S+L+LF +E DGAWHGGCLALAEL R
Sbjct: 232 TVLRKLNVKLVQRLGLTFMKPRLASWRYQRGSRSLVSNLQGPNI-KVLHILFLSQEEEYDVPEEIEDVVEQLLIGLKDKDTVVRWSAAKGIGRITGRLPKELADEVVGSLLELFTFSESDGAWHGGCLALAELGR 365
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A8K0ADH8_BRALA (TBCD protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ADH8_BRALA) HSP 1 Score: 159 bits (402), Expect = 2.470e-44 Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSL---LQVRGGSFLGPATAAIVAEEEEE-VDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
TLLRK+ +KL+QR+G T++ R+ +WRY+RG RSL LQV G + AT A+ EE+++ DVP+E+E+++E +L GL+DRDT+VRWSAAKG+GR+T RLPRELAD VV VLD F E D AWHGGCLALAEL R
Sbjct: 285 TLLRKLSIKLVQRIGLTFLKTRLASWRYQRGSRSLAENLQVGGQDAVAMATVAMKDEEDDDDYDVPDEIEEVIEQVLRGLKDRDTIVRWSAAKGVGRVTSRLPRELADQVVEEVLDCFSLQEADEAWHGGCLALAELGR 423
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI0003F090DA (tubulin-specific chaperone D-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F090DA) HSP 1 Score: 164 bits (415), Expect = 2.500e-44 Identity = 80/135 (59.26%), Postives = 104/135 (77.04%), Query Frame = 1
Query: 1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
T+LRK +KL+QR+G T+V R+ WRY+RG RSLL + PA + V + +E+ D+PEE+E++++ LL GL+D+DTVVRWSAAKG+GRIT RLP+ELAD VV SVL+LF +E DGAWHGGCLALAEL R
Sbjct: 206 TILRKQNIKLIQRLGLTFVKARIATWRYQRGSRSLLDNLKKTQQSPADVSTVTQGDEDYDIPEEIEEVIDQLLIGLKDKDTVVRWSAAKGVGRITGRLPQELADQVVESVLELFSLSETDGAWHGGCLALAELGR 340
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI00052EAEB3 (tubulin-specific chaperone D-like n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EAEB3) HSP 1 Score: 159 bits (402), Expect = 3.490e-44 Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 4 LLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPAT------AAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
LLRK+ +KL+QR+G T+V P+V WRY+RG RSL G T AA+ A++EEE D+P E+E++VE LL GL+D+DT+VRWSAAKGIGRIT RLP+ELADDVV S+LD F E D AWHGGCLALAEL R
Sbjct: 295 LLRKLGMKLVQRLGLTFVKPKVAKWRYQRGARSLAANLQAQSSGVQTRKITTAAAVEADDEEEYDIPGEIENVVEQLLVGLKDKDTIVRWSAAKGIGRITGRLPKELADDVVGSLLDCFSFQETDNAWHGGCLALAELGR 434 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13942.3080.1 >prot_Ecto-sp13_S_contig13942.3080.1 ID=prot_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp MLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEEback to top mRNA from alignment at Ecto-sp13_S_contig13942:2285..3530+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13942.3080.1 ID=mRNA_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13942:2285..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13942:2285..3530+ >mRNA_Ecto-sp13_S_contig13942.3080.1 ID=mRNA_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13942:2285..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |