mRNA_Ecto-sp13_S_contig13942.3080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13942.3080.1
Unique NamemRNA_Ecto-sp13_S_contig13942.3080.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A6H5KH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH41_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.950e-63
Identity = 121/175 (69.14%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVR--------------------GGSFLGPATAAI--------------------VAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            TLLRKMLVKLLQRVGTTYVPPRV+AWRYRRGQRSLLQ                      GG     +T  +                    VAEEE+EV VPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR
Sbjct:  221 TLLRKMLVKLLQRVGTTYVPPRVIAWRYRRGQRSLLQAASVEEKPLDRQEGQTVETNGSGGDAEEISTKGVGVARDGASAQEKADVNEVDAVAEEEDEVGVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 395          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 5.800e-62
Identity = 125/196 (63.78%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQ-------------------------------------VRGGSFLGPATAA------------------------IVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQ                                     V  G   G A  +                        +VAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR
Sbjct:  310 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQNLESTPDAASDGGDCCQDEQQAASVEEKPLERQEGETVEAGGGEGDAEESSAGGVGVAQDGPPAQVKVDATEVDVVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 505          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A7S2WC38_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WC38_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.090e-47
Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 1
Query:   10 RKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEE--EEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            RK+ +KL+QR G  ++PP+VV WRY+RGQRSLL    G+  G  +A +  EE  +E+VD+PEE+ED++E LLCGLRDRDT+VRWSAAKGIGRIT RLP ELADDVV  VL+LF  +E D AWHGGCLALAELAR
Sbjct:  319 RKLTMKLVQRSGLNFLPPKVVKWRYQRGQRSLLH---GAAKGVESAQVELEESEDEDVDIPEEVEDVIEKLLCGLRDRDTIVRWSAAKGIGRITSRLPEELADDVVAYVLELFDVSEGDSAWHGGCLALAELAR 449          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A835ZJS0_9STRA (Tubulin folding cofactor D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.290e-46
Identity = 90/147 (61.22%), Postives = 105/147 (71.43%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIV------------AEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            TLLRKM+VKL QR+G  ++PPRVVAWRY+RGQRSLLQ   G                         ++ E +V EE+E++VE LLCGLRDRDTVVRWSAAKG+GR+T RLP  LAD+VV SVLDLF +AE DG WHGGCLALAELAR
Sbjct:  323 TLLRKMVVKLFQRIGLAFLPPRVVAWRYQRGQRSLLQNLAGXXXXXXXXXXXXXXXXXXXXXXEGADDVEFEVAEEVEEVVEQLLCGLRDRDTVVRWSAAKGVGRVTGRLPLALADEVVGSVLDLFSDAESDGGWHGGCLALAELAR 469          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A2H6N9H2_MICLE (Uncharacterized protein (Fragment) n=1 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6N9H2_MICLE)

HSP 1 Score: 159 bits (402), Expect = 1.020e-45
Identity = 84/142 (59.15%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSL---LQVRGGSFLGPATAAIVA----EEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            T+LRK+ VKL+QR+G T++ P+V  WRY+RG RSL   LQ   G  +   T  I      EEEEE D+P E+E+++E LL GL+D+DT+VRWSAAKG+GR+T RLP+ELADDVV SVLD F   E D AWHGGCLALAEL R
Sbjct:   94 TILRKLGVKLVQRLGLTFLKPKVAKWRYQRGFRSLAANLQFSSGGLIPQKTENISIDTGEEEEEEYDIPGEIENVIEQLLIGLKDKDTIVRWSAAKGVGRLTGRLPKELADDVVGSVLDCFSFQETDNAWHGGCLALAELGR 235          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI0018D85098 (tubulin-specific chaperone D-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85098)

HSP 1 Score: 165 bits (418), Expect = 9.860e-45
Identity = 84/141 (59.57%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVA------EEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            T L K+ +KL+QR+G T++  R   WRY+RG RSL     G    P   A V+      +E++E DVPEE+E+++E LL GLRDRDTVVRWSAAKG+GR+T RLPRELAD VV SVL+LF   EWDGAWHGGCLALAEL R
Sbjct:  296 TQLHKLAMKLIQRLGLTFLRARTAVWRYQRGSRSLADNLNGQVSVPLAVATVSSQIAPEDEDDEYDVPEEIEEVIEQLLVGLRDRDTVVRWSAAKGVGRLTSRLPRELADQVVESVLELFNLREWDGAWHGGCLALAELGR 436          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A7SMP4_NEMVE (Tubulin-specific chaperone D (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SMP4_NEMVE)

HSP 1 Score: 164 bits (416), Expect = 1.830e-44
Identity = 84/135 (62.22%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            T+LRK+ VKL+QR+G T++ PR+ +WRY+RG RSL+    G  +      +   +EEE DVPEE+ED+VE LL GL+D+DTVVRWSAAKGIGRIT RLP+ELAD+VV S+L+LF  +E DGAWHGGCLALAEL R
Sbjct:  232 TVLRKLNVKLVQRLGLTFMKPRLASWRYQRGSRSLVSNLQGPNI-KVLHILFLSQEEEYDVPEEIEDVVEQLLIGLKDKDTVVRWSAAKGIGRITGRLPKELADEVVGSLLELFTFSESDGAWHGGCLALAELGR 365          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: A0A8K0ADH8_BRALA (TBCD protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ADH8_BRALA)

HSP 1 Score: 159 bits (402), Expect = 2.470e-44
Identity = 82/139 (58.99%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSL---LQVRGGSFLGPATAAIVAEEEEE-VDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            TLLRK+ +KL+QR+G T++  R+ +WRY+RG RSL   LQV G   +  AT A+  EE+++  DVP+E+E+++E +L GL+DRDT+VRWSAAKG+GR+T RLPRELAD VV  VLD F   E D AWHGGCLALAEL R
Sbjct:  285 TLLRKLSIKLVQRIGLTFLKTRLASWRYQRGSRSLAENLQVGGQDAVAMATVAMKDEEDDDDYDVPDEIEEVIEQVLRGLKDRDTIVRWSAAKGVGRVTSRLPRELADQVVEEVLDCFSLQEADEAWHGGCLALAELGR 423          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI0003F090DA (tubulin-specific chaperone D-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F090DA)

HSP 1 Score: 164 bits (415), Expect = 2.500e-44
Identity = 80/135 (59.26%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    1 TLLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            T+LRK  +KL+QR+G T+V  R+  WRY+RG RSLL     +   PA  + V + +E+ D+PEE+E++++ LL GL+D+DTVVRWSAAKG+GRIT RLP+ELAD VV SVL+LF  +E DGAWHGGCLALAEL R
Sbjct:  206 TILRKQNIKLIQRLGLTFVKARIATWRYQRGSRSLLDNLKKTQQSPADVSTVTQGDEDYDIPEEIEEVIDQLLIGLKDKDTVVRWSAAKGVGRITGRLPQELADQVVESVLELFSLSETDGAWHGGCLALAELGR 340          
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Match: UPI00052EAEB3 (tubulin-specific chaperone D-like n=1 Tax=Tinamus guttatus TaxID=94827 RepID=UPI00052EAEB3)

HSP 1 Score: 159 bits (402), Expect = 3.490e-44
Identity = 84/140 (60.00%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    4 LLRKMLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPAT------AAIVAEEEEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADDVVCSVLDLFVEAEWDGAWHGGCLALAELAR 405
            LLRK+ +KL+QR+G T+V P+V  WRY+RG RSL         G  T      AA+ A++EEE D+P E+E++VE LL GL+D+DT+VRWSAAKGIGRIT RLP+ELADDVV S+LD F   E D AWHGGCLALAEL R
Sbjct:  295 LLRKLGMKLVQRLGLTFVKPKVAKWRYQRGARSLAANLQAQSSGVQTRKITTAAAVEADDEEEYDIPGEIENVVEQLLVGLKDKDTIVRWSAAKGIGRITGRLPKELADDVVGSLLDCFSFQETDNAWHGGCLALAELGR 434          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13942.3080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH41_9PHAE6.950e-6369.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNX3_ECTSI5.800e-6263.78Tubulin folding cofactor D n=1 Tax=Ectocarpus sili... [more]
A0A7S2WC38_9STRA1.090e-4765.67Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A835ZJS0_9STRA3.290e-4661.22Tubulin folding cofactor D n=1 Tax=Tribonema minus... [more]
A0A2H6N9H2_MICLE1.020e-4559.15Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
UPI0018D850989.860e-4559.57tubulin-specific chaperone D-like n=1 Tax=Patiria ... [more]
A7SMP4_NEMVE1.830e-4462.22Tubulin-specific chaperone D (Fragment) n=2 Tax=Ne... [more]
A0A8K0ADH8_BRALA2.470e-4458.99TBCD protein n=1 Tax=Branchiostoma lanceolatum Tax... [more]
UPI0003F090DA2.500e-4459.26tubulin-specific chaperone D-like n=1 Tax=Saccoglo... [more]
UPI00052EAEB33.490e-4460.00tubulin-specific chaperone D-like n=1 Tax=Tinamus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13942contigEcto-sp13_S_contig13942:2285..3530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score208.8
Seed ortholog evalue1.6e-51
Seed eggNOG ortholog2880.D8LNX3
Model size408
KEGG koko:K21767
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsCOG2116@1,KOG1943@2759
Cds size393
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462744.2449973-UTR-Ecto-sp13_S_contig13942:2284..22991681462744.2449973-UTR-Ecto-sp13_S_contig13942:2284..2299Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13942 2285..2299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462744.257219-CDS-Ecto-sp13_S_contig13942:2299..24281681462744.257219-CDS-Ecto-sp13_S_contig13942:2299..2428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13942 2300..2428 +
1681462744.275003-CDS-Ecto-sp13_S_contig13942:2849..30121681462744.275003-CDS-Ecto-sp13_S_contig13942:2849..3012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13942 2850..3012 +
1681462744.2826002-CDS-Ecto-sp13_S_contig13942:3429..35301681462744.2826002-CDS-Ecto-sp13_S_contig13942:3429..3530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13942 3430..3530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13942.3080.1prot_Ecto-sp13_S_contig13942.3080.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13942 2300..3530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13942.3080.1

>prot_Ecto-sp13_S_contig13942.3080.1 ID=prot_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MLVKLLQRVGTTYVPPRVVAWRYRRGQRSLLQVRGGSFLGPATAAIVAEE
EEEVDVPEELEDIVEALLCGLRDRDTVVRWSAAKGIGRITERLPRELADD
VVCSVLDLFVEAEWDGAWHGGCLALAELAR*
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mRNA from alignment at Ecto-sp13_S_contig13942:2285..3530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13942.3080.1 ID=mRNA_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13942:2285..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACTCCTGCGCAAGATGCTGGTGAAGCTACTGCAGAGAGTAGGGACGAC TTACGTGCCCCCGCGCGTCGTCGCGTGGAGGTACCGCCGCGGACAGCGGT CTCTACTGCAGGTGCGTGGTGGGAGCTTTTTGGGGCCCGCAACTGTACCC TGTCGTTGACCTCCCTGTCCATGCGTGACTCTACCCTTGCTTGTCGCTGT GGATGAAGACCTGCCTTCGTGCGCGGTAGTTATGTTCCGGACCATTTTGA CGTTCCCGGAAGGGCGCACAAGACTATCCTGGCTGAGCCTTCTCATACAT CCTTGCATCTCCGGGCTTTATGTGTTCCCGTTCTCCCCTATGCGCGTAGA ATCTCGAATCTACACTGGGCGCAGCATCCGATGGTGGAGACCGCTTTCAA GACGAACAACAAGCGGCAAGCGTGGAGGAGAAGCCATTGGACAGACAGGA AGGGGAGACTGTGGAAGCGGGCGGGGGCGAAGGTGACGCAGAGGAGAGTT CTACCGGGGGGGTAGGGGTAGCGGGGGACGCGGCTCCGGCTCAGGGGAAG GCGGACGCCACCGAGGCTGCAATTGTTGCGGAGGAGGAGGAGGAGGTAGA CGTCCCCGAGGAGCTGGAGGACATCGTGGAGGCGCTGCTGTGCGGGCTGA GGGACCGGGACACGGTGGTGCGCTGGTCCGCAGCGAAGGGGATTGGGAGG ATCACCGAGAGACTCCCGCGCGAGCTAGGTACAGTACGAGCCAATTCATG GAAACGTCGTCGGTGGTGTGCATGAGCGCCGGGCCTTGCGCGGGGGGCGG GGGTGGAGTTGCCGTGTTTGTTGCAGAATTGGTGTTGATTTTGGGGACTG GAGGTTAAATATTTTGGTGCCTACGGTCTCCGAGCAAGAATGGTGCTTGG AAAAAACGGAAACAGCCTAGGTGAAATTCGCCTTAAACTTTGATTCGCGT GAGTACCGCGCACGGTGTGGTGGACATCTCCGGGCCGAGCATATGCTGTG GCTTTGACACGTTCCACTGCTGCTGCTGCTGCTGTTGTGTTGCCCACGTT CGCGTCCTTCGACATCAATAATCTACCGGGCTCCCCAAACCCGGCCTTTT CTCTCCTTTTTGTATTGGACCGCACCGCACCGTACCGTACCGCAGCGGAC GACGTGGTGTGCAGCGTGTTGGACCTGTTCGTGGAGGCGGAGTGGGACGG CGCCTGGCACGGCGGGTGCCTCGCCCTGGCGGAGCTTGCCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13942:2285..3530+

>mRNA_Ecto-sp13_S_contig13942.3080.1 ID=mRNA_Ecto-sp13_S_contig13942.3080.1|Name=mRNA_Ecto-sp13_S_contig13942.3080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13942:2285..3530+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTGAAGCTACTGCAGAGAGTAGGGACGACTTACGTGCCCCCGCG
CGTCGTCGCGTGGAGGTACCGCCGCGGACAGCGGTCTCTACTGCAGGTGC
GTGGTGGGAGCTTTTTGGGGCCCGCAACTGCTGCAATTGTTGCGGAGGAG
GAGGAGGAGGTAGACGTCCCCGAGGAGCTGGAGGACATCGTGGAGGCGCT
GCTGTGCGGGCTGAGGGACCGGGACACGGTGGTGCGCTGGTCCGCAGCGA
AGGGGATTGGGAGGATCACCGAGAGACTCCCGCGCGAGCTAGCGGACGAC
GTGGTGTGCAGCGTGTTGGACCTGTTCGTGGAGGCGGAGTGGGACGGCGC
CTGGCACGGCGGGTGCCTCGCCCTGGCGGAGCTTGCCAGGTGA
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