prot_Ecto-sp13_S_contig13933.3071.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13933.3071.1
Unique Nameprot_Ecto-sp13_S_contig13933.3071.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length462
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Match: D8LKP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP9_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 5.940e-92
Identity = 169/233 (72.53%), Postives = 175/233 (75.11%), Query Frame = 0 
Query:   78 MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPLRAIARLFSPSRPPSARRRLASAVLAVYLSLACLTLCLAEEGWTGLDAAYFSTATLTTIGCRDLSVRTAGGKLVASTLSIVGPLVAALFWRDSARATTSRSALPPHQEERGRQGSGIDFTRPLSQRDEEENQARVADAMWALVGFLMVLQGYAGVFLRASRGGEGGAVGDGGDLPATTSVFGAVFSALQALSTVG 310
            MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPL AIARLFSPSRPPSARRRLASAV AVYLSLACLTLCLAE+GWTGLDAAYFSTATLTT                                                  ERGRQGSGIDFTRP+SQ+DEEE+QARVADA+WALVGFLMVL G AGVFLRASRGG GGAV +GGDLPATTSV GAVFSAL ALSTVG
Sbjct:    1 MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPLGAIARLFSPSRPPSARRRLASAVFAVYLSLACLTLCLAEDGWTGLDAAYFSTATLTT--------------------------------------------------ERGRQGSGIDFTRPMSQQDEEEHQARVADAIWALVGFLMVLLGCAGVFLRASRGGGGGAVDEGGDLPATTSVLGAVFSALLALSTVG 183
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BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Match: A0A6H5L1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.960e-32
Identity = 106/133 (79.70%), Postives = 110/133 (82.71%), Query Frame = 0 
Query:  330 MLLGAMIFSRAMWAVVDVLSPPAAGGGLPTALSAGAPTPAAANQTPDREAGDGATVASSCPVGAAKAIGAGGXXXXXXXEKLDAITPXXXXXXXXXXXXXXXXXXXXGFAGSGTPDRGLPQRQLFREDGAAAA 462
            MLLGAMIFSRAMWA+VDVLSPPAAGG L TALSA A       QTPDREAG GAT ASSCPVGAAKA GAG        +KLDAITP XXXXXXXXXXXXXXXXXXX FAGSGTP+RGLPQ+QLFREDGAAAA
Sbjct:    1 MLLGAMIFSRAMWAIVDVLSPPAAGGRLATALSAVAXXXXXXXQTPDREAGGGATGASSCPVGAAKATGAGREAAAAALDKLDAITPQXXXXXXXXXXXXXXXXXXX-FAGSGTPNRGLPQQQLFREDGAAAA 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP9_ECTSI5.940e-9272.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1X2_9PHAE1.960e-3279.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 139..210
e-value: 5.5E-9
score: 35.9
NoneNo IPR availableGENE3D1.10.287.70coord: 109..249
e-value: 2.9E-12
score: 48.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 250..271
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 291..310
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 206..249
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 343..462
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 135..154
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..205
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 272..290
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..114
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 155..187
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 322..342
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 311..321
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..134
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.47
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 132..205
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 188..205
NoneNo IPR availableTMHMMTMhelixcoord: 136..158
NoneNo IPR availableTMHMMTMhelixcoord: 255..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13933contigEcto-sp13_S_contig13933:63..4449 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13933.3071.1mRNA_Ecto-sp13_S_contig13933.3071.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13933 63..4451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13933.3071.1 ID=prot_Ecto-sp13_S_contig13933.3071.1|Name=mRNA_Ecto-sp13_S_contig13933.3071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=462bp
AQQWAWLFQSCTPAAALGFGVPGRTPAPRMSLHRSSRHSLGSSSSRHSTI
SVGGTRYSSRGPSNVHAASLLSLQLWAMSELRDVLPPLGERARAARLAFL
GVVAALAAAMVLSYPLRAIARLFSPSRPPSARRRLASAVLAVYLSLACLT
LCLAEEGWTGLDAAYFSTATLTTIGCRDLSVRTAGGKLVASTLSIVGPLV
AALFWRDSARATTSRSALPPHQEERGRQGSGIDFTRPLSQRDEEENQARV
ADAMWALVGFLMVLQGYAGVFLRASRGGEGGAVGDGGDLPATTSVFGAVF
SALQALSTVGPPPSIAHLPPQARAALIPLMLLGAMIFSRAMWAVVDVLSP
PAAGGGLPTALSAGAPTPAAANQTPDREAGDGATVASSCPVGAAKAIGAG
GAAAAAALEKLDAITPQQRRQQQQQYRRQRAASEGGGFAGSGTPDRGLPQ
RQLFREDGAAAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013099K_chnl_dom