mRNA_Ecto-sp13_S_contig13933.3071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13933.3071.1
Unique NamemRNA_Ecto-sp13_S_contig13933.3071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Match: D8LKP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP9_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 5.940e-92
Identity = 169/233 (72.53%), Postives = 175/233 (75.11%), Query Frame = 1 
Query:  232 MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPLRAIARLFSPSRPPSARRRLASAVLAVYLSLACLTLCLAEEGWTGLDAAYFSTATLTTIGCRDLSVRTAGGKLVASTLSIVGPLVAALFWRDSARATTSRSALPPHQEERGRQGSGIDFTRPLSQRDEEENQARVADAMWALVGFLMVLQGYAGVFLRASRGGEGGAVGDGGDLPATTSVFGAVFSALQALSTVG 930
            MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPL AIARLFSPSRPPSARRRLASAV AVYLSLACLTLCLAE+GWTGLDAAYFSTATLTT                                                  ERGRQGSGIDFTRP+SQ+DEEE+QARVADA+WALVGFLMVL G AGVFLRASRGG GGAV +GGDLPATTSV GAVFSAL ALSTVG
Sbjct:    1 MSELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPLGAIARLFSPSRPPSARRRLASAVFAVYLSLACLTLCLAEDGWTGLDAAYFSTATLTT--------------------------------------------------ERGRQGSGIDFTRPMSQQDEEEHQARVADAIWALVGFLMVLLGCAGVFLRASRGGGGGAVDEGGDLPATTSVLGAVFSALLALSTVG 183
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BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Match: A0A6H5L1X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.960e-32
Identity = 106/133 (79.70%), Postives = 110/133 (82.71%), Query Frame = 1 
Query:  988 MLLGAMIFSRAMWAVVDVLSPPAAGGGLPTALSAGAPTPAAANQTPDREAGDGATVASSCPVGAAKAIGAGGXXXXXXXEKLDAITPXXXXXXXXXXXXXXXXXXXXGFAGSGTPDRGLPQRQLFREDGAAAA 1386
            MLLGAMIFSRAMWA+VDVLSPPAAGG L TALSA A       QTPDREAG GAT ASSCPVGAAKA GAG        +KLDAITP XXXXXXXXXXXXXXXXXXX FAGSGTP+RGLPQ+QLFREDGAAAA
Sbjct:    1 MLLGAMIFSRAMWAIVDVLSPPAAGGRLATALSAVAXXXXXXXQTPDREAGGGATGASSCPVGAAKATGAGREAAAAALDKLDAITPQXXXXXXXXXXXXXXXXXXX-FAGSGTPNRGLPQQQLFREDGAAAA 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13933.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKP9_ECTSI5.940e-9272.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1X2_9PHAE1.960e-3279.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13933contigEcto-sp13_S_contig13933:63..4451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1388
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionTwo pore domain potassium channel domain
Ec32 orthologEc-03_001120.1
Cds size1386
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13933.3071.1prot_Ecto-sp13_S_contig13933.3071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13933 63..4449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.5927851-CDS-Ecto-sp13_S_contig13933:62..4241681462743.5927851-CDS-Ecto-sp13_S_contig13933:62..424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 63..424 +
1681462743.604229-CDS-Ecto-sp13_S_contig13933:1475..16321681462743.604229-CDS-Ecto-sp13_S_contig13933:1475..1632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 1476..1632 +
1681462743.614256-CDS-Ecto-sp13_S_contig13933:2139..22891681462743.614256-CDS-Ecto-sp13_S_contig13933:2139..2289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 2140..2289 +
1681462743.62461-CDS-Ecto-sp13_S_contig13933:2618..27141681462743.62461-CDS-Ecto-sp13_S_contig13933:2618..2714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 2619..2714 +
1681462743.6336393-CDS-Ecto-sp13_S_contig13933:3456..36201681462743.6336393-CDS-Ecto-sp13_S_contig13933:3456..3620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 3457..3620 +
1681462743.6438794-CDS-Ecto-sp13_S_contig13933:3992..44491681462743.6438794-CDS-Ecto-sp13_S_contig13933:3992..4449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13933 3993..4449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13933.3071.1

>prot_Ecto-sp13_S_contig13933.3071.1 ID=prot_Ecto-sp13_S_contig13933.3071.1|Name=mRNA_Ecto-sp13_S_contig13933.3071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=462bp
AQQWAWLFQSCTPAAALGFGVPGRTPAPRMSLHRSSRHSLGSSSSRHSTI
SVGGTRYSSRGPSNVHAASLLSLQLWAMSELRDVLPPLGERARAARLAFL
GVVAALAAAMVLSYPLRAIARLFSPSRPPSARRRLASAVLAVYLSLACLT
LCLAEEGWTGLDAAYFSTATLTTIGCRDLSVRTAGGKLVASTLSIVGPLV
AALFWRDSARATTSRSALPPHQEERGRQGSGIDFTRPLSQRDEEENQARV
ADAMWALVGFLMVLQGYAGVFLRASRGGEGGAVGDGGDLPATTSVFGAVF
SALQALSTVGPPPSIAHLPPQARAALIPLMLLGAMIFSRAMWAVVDVLSP
PAAGGGLPTALSAGAPTPAAANQTPDREAGDGATVASSCPVGAAKAIGAG
GAAAAAALEKLDAITPQQRRQQQQQYRRQRAASEGGGFAGSGTPDRGLPQ
RQLFREDGAAAA
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mRNA from alignment at Ecto-sp13_S_contig13933:63..4451+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13933.3071.1 ID=mRNA_Ecto-sp13_S_contig13933.3071.1|Name=mRNA_Ecto-sp13_S_contig13933.3071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13933:63..4451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACAGCAGTGGGCTTGGCTTTTTCAGTCTTGTACACCTGCTGCTGCTTT
GGGGTTTGGCGTACCCGGACGCACCCCCGCGCCCAGGATGTCCTTACATC
GCTCCTCCAGACACTCCCTCGGGAGCTCGTCCAGCAGGCACTCGACGATT
AGCGTCGGGGGTACGAGGTATTCCTCGAGGGGCCCATCCAATGTGCATGC
TGCCTCGCTCCTGTCTCTGCAGCTGTGGGCGATGTCCGAGCTGCGGGACG
TGCTACCTCCCCTCGGAGAGCGGGCCCGGGCGGCGAGGCTCGCATTCCTG
GGCGTCGTGGCTGCGCTGGCCGCTGCAATGGTGCTGTCATATCCTCTGAG
AGCCATCGCAAGGTGAACAGAAAAGTATGTCTGTTTAGGTCTTGCGATGT
TCAGTTTGAGGACCCGCCCTTGGGGTACACAGCGAGGGGGTACACAGCTA
TTGAGCGCATTTTGAATTCCAGAACGCATTTCAGGGTGCATCATGCCACA
TGGTTTTCTGTTGCGTCTTCTTTCCCCATGTACCAGGTTATGCTGTAATG
TATGTGATTCGCGCCGTCATGAATCGAGGGAAGCTCTGCCGTGCTACAAG
TATATGGTATACCAGTGCCAAAACACTGCTATCATGATTTCACAAACGGC
AAATGTTGGCAACAGATGAAAGTCGGTACTGTTTGGATCATCATATGCAT
CGAAAGAGTCGGCGCATGTTATTACCCGTCCGATACAGCATTATCTTCCG
TACGCCATCTTGGATGTTCTGAGCCCCCTGAACAAAGGGCACGCGTGTGG
TGTGTATGCTAAATTAACGGCGTACTTTACCACACGCCACGCGACGGTCA
GAACCACCCCCCCCTGCAGTGATATGTACCGATCCACCGTTTGACAGGAG
TAACAGAAGTACATCCGGTGGTAACATTGCCATTTCTAAGGGTCAGCATG
GACCCAAGACATGTGGTGACGCTGCAAACGGCAAAACGGGGAGAAACCAA
GTTGCACGACATGACGTTCGACAAAAGCACATGCATCGTGCGTTGAGGCA
ACGTTAGTGTTGATGCTCGAGCGCCGTCTCGGCGTGCATGGCTCGTCTGC
TGCCGTAGTCGATGTAGCTTGTCACCCATCACACCGACTCAGCACAAATA
CTTCCTTCTCCTGTGGCTTATTTAGGTGCACCTTTTAACGTTACAACATA
GGCCCTGAGGTAGTGTTGGTTTTGTTCCGGGGTTAACATGAAACCCTTTT
GGGAAACAAGTCACTGCTTGTTCGGTCGTTGGCAGGCGCACTGCTGCCGC
AGTCGATGTATTATAGCATCTTCTTCAACCTTGTTTGTTCTCTCGGTGCA
CTTGCTGCTGTAGCCCGTTACAACGTCCCCGCACCCGTTGTTCGATTTCG
ATCGGTGTGGCAGGCTATTCAGCCCGTCACGTCCCCCCTCCGCCCGGAGA
CGTCTAGCTTCGGCGGTCTTAGCCGTCTACCTGTCGTTGGCGTGCCTGAC
GCTGTGCCTGGCAGAAGAGGGCTGGACCGGCCTCGACGCCGCCTACTTTT
CCACGGCCACTCTGACCACGGTGAGATTTCAGTTGTCCCTGGGTCAAAAA
CACACGTGGTATTTCGTTTAAACAGATGTCCTTCAGCCGGGAGAAGTGTC
CTTACGGTGAATACCCTTCCTTATGCTGTGAAAACAGAGTTGTCCTTGAC
CGCGAGTGACCTTAAGAATGGTGTCCTTAACCGAAGCGTATCTACGGGAG
TCCGTAGACGATCAAACGCTAAGAGAGCAAGTCGGCGGACGCCGACTTGA
GTTTTGCTCAATATCTGTCTACTCCCGGCGCTCTGGGGCGCAGGAAGTGG
GAGGTCATCTGATAGGCTAGGGGAAACGTGTTTGAGCCACCTTTGGCAAA
GTAGGAAGGAACGATCGGGCATCGGTGATCGGTACTGCGGGAACAATTCG
TCGTCCTCTCGAGGGCGCGTGGTCAATGGTCTAACATCGAAGTCATGCAA
GACATGAGAGTTCCCCACCCCCATTTTTGGTTCCGTTCGTGGGACCGCCG
ATGTTTATCGCGCTACTGGTGAACAAGATTGGATGCCGGGACTTAAGCGT
TCGGACGGCTGGGGGCAAGCTAGTGGCGAGCACGTTGTCGATCGTCGGGC
CGTTGGTTGCGGCTCTTTTCTGGAGGGATTCTGCAAGGGCGACGACGTCT
AGATCTGCTCTGCCTCCGCACCAGGAGGCAAGATACTCGTTCAAGAGCAT
GCATGCGGCGGGCCTGTTAATGTGAACGGGCACGTCGTGGAGTACACGGT
GACGACGATACCTTTGTTGATATTTTCGCCGACCGTTCACACGTCTCTCT
GAGTCTTTTTTTTTTTTTTTTTTGAGAAAACCGTTCCGAATTCAGTGCGT
CATGCACGCGAGTTCTGTGTTGTGCTGCGTCATACCAGTACATAATAAGT
GGTTCCTTCATGTCGTGCGTCGTTTGCGTCGTTTCCGTTTGGTTTGCGTC
ATATCTGAGTGTTTTCTGCATGCTGCGCGTCATGTTTGTGGTGACTTTGG
TGGCAGGAGAGGGGCAGACAGGGCAGCGGCATCGATTTCACGCGTCCTTT
GTCTCAACGAGATGAAGAGGAAAACCAGGCGCGGGTCGCTGACGCTATGT
GGGTGAGCCATGGCGTGTACATGCGGGTATGGTGGGGGTTGGGGGGTGTA
CTTATGCAAACGCATGCCGTAGTCATTAGACCGTAAACCTCGCATTCCTA
CAATGCCGGGACGGAGCGATATTTCAGGTTTGGCCGGCCCAGGCCACGTT
TTACAGGGATGAACCAGAACCTGGCCATCATCCTTGCGCTTGCTGTGCCA
AATGAGATATGCCATCGGTTAATTGGGCATCCCGGCCAGGGGGGGGGGAC
AGGATCGGGATTGCTGATATTCTTTGCCAGGGGTCTCTCAGGGAATATAC
GGAGAGAGAAGTATGCATTCTGTGTTGCCTGAGAGGTCGTGAAGAGCGGA
TCAATCAATGCTTGGGCAACGATTCCCGTGGGACGTGTTGTGCGGGACTT
GCGTCGTGGGGGTGGCGTCGTGGGGGTGGCGTGGTGGGGGTCGTGTCTTG
GTCAGCATACCCGTCTGGAGAAAGCTACCCCTGAAACGGGCAAACCTCTC
GAGAGAATCTTCATCACTACACACCCAACCACGCAGCCGCCGGCTTAGAA
GCGCGCACTGTCCATCGTGCTCCAAGCGTGCAACAACGGCAGACCCATAC
AGACCGTTTCCGGCTTGGCCTGCGGCATACAGTCTCACTCTACAGCCGTG
TTTTTCCACGCTCTTGCTCCGCAGCACGATAGCAGCATTGCGACCCCCCG
CCGACTCTCGCGTGTTTCGTGTTCCTTGCGCGGAAAACCCGCAGGCCTTG
GTGGGTTTCCTGATGGTGTTGCAAGGGTACGCCGGCGTTTTTCTCCGGGC
GTCGCGGGGGGGGGAGGGCGGTGCCGTTGGCGACGGGGGCGACTTGCCGG
CGACGACAAGCGTGTTTGGGGCCGTGTTTTCTGCGCTGCAAGCGCTCAGC
ACCGTAGGGTGAGTTTCGGTGTAACGTAGAAACGTATGTGCGCCACCTTT
AGATTGAAGTGAATCAAATGTTTCCCGATAACTTTTCTTGAGTTTTGATG
ATGGGCGGGTGGCAAAGGAGAACTGGGGGGTTAGATGCGGCAAGGTCGTG
CAGGGTAAACGAACGGACGTCGCCATCGGTCTACCCCCCCCCCCCTAATG
GCCTCGTGTTTGGCCCTTTTGATCTACTTCATGGACGAGACGTGATGTAT
TTGGTGGACACTTCGACATTCGCCAAGCCCGTCACGCACCGTGTAGTCAC
AAGCCTTGTCTTGATTAAGCACCTCCCCCCCCCCTCCCAATGCTGGTTTC
TGCTGTGCCCCCACCGCGCGGGCCTTCAAGCCCTCCTCCTTCTATCGCGC
ATCTCCCTCCCCAGGCGCGCGCGGCACTCATCCCGCTCATGCTCCTCGGG
GCGATGATTTTCTCTCGCGCGATGTGGGCGGTCGTGGACGTGTTGTCACC
CCCTGCCGCTGGGGGGGGGCTCCCCACCGCCTTATCTGCGGGGGCCCCTA
CGCCGGCGGCGGCGAACCAGACTCCCGACCGTGAGGCCGGCGACGGAGCT
ACAGTTGCGTCTTCCTGCCCGGTGGGCGCAGCGAAGGCGATCGGGGCGGG
GGGGGCGGCGGCCGCGGCTGCCCTAGAAAAGCTCGATGCGATAACGCCGC
AGCAGCGGCGGCAGCAGCAGCAGCAGTATCGTCGGCAGCGCGCGGCTTCG
GAGGGCGGAGGGTTTGCTGGTTCCGGCACTCCGGACCGGGGGCTGCCGCA
GCGGCAACTTTTCCGCGAGGATGGGGCGGCAGCGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13933:63..4451+

>mRNA_Ecto-sp13_S_contig13933.3071.1 ID=mRNA_Ecto-sp13_S_contig13933.3071.1|Name=mRNA_Ecto-sp13_S_contig13933.3071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13933:63..4451+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACAGCAGTGGGCTTGGCTTTTTCAGTCTTGTACACCTGCTGCTGCTTT
GGGGTTTGGCGTACCCGGACGCACCCCCGCGCCCAGGATGTCCTTACATC
GCTCCTCCAGACACTCCCTCGGGAGCTCGTCCAGCAGGCACTCGACGATT
AGCGTCGGGGGTACGAGGTATTCCTCGAGGGGCCCATCCAATGTGCATGC
TGCCTCGCTCCTGTCTCTGCAGCTGTGGGCGATGTCCGAGCTGCGGGACG
TGCTACCTCCCCTCGGAGAGCGGGCCCGGGCGGCGAGGCTCGCATTCCTG
GGCGTCGTGGCTGCGCTGGCCGCTGCAATGGTGCTGTCATATCCTCTGAG
AGCCATCGCAAGGCTATTCAGCCCGTCACGTCCCCCCTCCGCCCGGAGAC
GTCTAGCTTCGGCGGTCTTAGCCGTCTACCTGTCGTTGGCGTGCCTGACG
CTGTGCCTGGCAGAAGAGGGCTGGACCGGCCTCGACGCCGCCTACTTTTC
CACGGCCACTCTGACCACGATTGGATGCCGGGACTTAAGCGTTCGGACGG
CTGGGGGCAAGCTAGTGGCGAGCACGTTGTCGATCGTCGGGCCGTTGGTT
GCGGCTCTTTTCTGGAGGGATTCTGCAAGGGCGACGACGTCTAGATCTGC
TCTGCCTCCGCACCAGGAGGAGAGGGGCAGACAGGGCAGCGGCATCGATT
TCACGCGTCCTTTGTCTCAACGAGATGAAGAGGAAAACCAGGCGCGGGTC
GCTGACGCTATGTGGGCCTTGGTGGGTTTCCTGATGGTGTTGCAAGGGTA
CGCCGGCGTTTTTCTCCGGGCGTCGCGGGGGGGGGAGGGCGGTGCCGTTG
GCGACGGGGGCGACTTGCCGGCGACGACAAGCGTGTTTGGGGCCGTGTTT
TCTGCGCTGCAAGCGCTCAGCACCGTAGGCCCTCCTCCTTCTATCGCGCA
TCTCCCTCCCCAGGCGCGCGCGGCACTCATCCCGCTCATGCTCCTCGGGG
CGATGATTTTCTCTCGCGCGATGTGGGCGGTCGTGGACGTGTTGTCACCC
CCTGCCGCTGGGGGGGGGCTCCCCACCGCCTTATCTGCGGGGGCCCCTAC
GCCGGCGGCGGCGAACCAGACTCCCGACCGTGAGGCCGGCGACGGAGCTA
CAGTTGCGTCTTCCTGCCCGGTGGGCGCAGCGAAGGCGATCGGGGCGGGG
GGGGCGGCGGCCGCGGCTGCCCTAGAAAAGCTCGATGCGATAACGCCGCA
GCAGCGGCGGCAGCAGCAGCAGCAGTATCGTCGGCAGCGCGCGGCTTCGG
AGGGCGGAGGGTTTGCTGGTTCCGGCACTCCGGACCGGGGGCTGCCGCAG
CGGCAACTTTTCCGCGAGGATGGGGCGGCAGCGGCG
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