mRNA_Ecto-sp13_S_contig13924.3065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13924.3065.1
Unique NamemRNA_Ecto-sp13_S_contig13924.3065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.810e-82
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQ 399
            GSDR+ALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTY+AVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQ
Sbjct:  705 GSDRIALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYVAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQ 837          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A4D9CZK3_9STRA (RIC1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZK3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.520e-33
Identity = 63/135 (46.67%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASR--HKHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQ 399
            G + +A ++ +PW+ ++L W  + V P Y S N P+  V+ S +G  +AVAG RG A+YSRP  RWRLFGN+ QERE++VAGM WWGE A+VV ++   + G  +L++SR HL + +L+  P+ LP G RPLF++
Sbjct:  521 GVNTLAFLEQRPWNPRLLSWAHVTVPPAY-SVNVPVTLVAQSPSGQQLAVAGKRGLALYSRPQRRWRLFGNVHQERELEVAGMTWWGEDAVVVVAKLWSRAGCDILVYSRHHLDNSSLLCDPVPLPPGTRPLFLE 654          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A1Y1I3Y9_KLENI (RIC1 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3Y9_KLENI)

HSP 1 Score: 86.3 bits (212), Expect = 4.970e-17
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    7 DRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHK---HGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFM 396
            DRV LV S       L   V+P +  YL++N P+ HV+ +  G+Y+A+AG RG  +Y+    RWR+FG+I QE++V   G+ W G   +VVA  H+   + F L L+ R HL   +L+    RLP+  RP+ M
Sbjct:  435 DRVLLVQSDDEEELKLQHLVVPRN--YLAANWPVLHVAANEDGSYLAIAGRRGLTLYNIRAKRWRVFGDIAQEKQVACVGLLWLGR--IVVACLHREATNSFELCLYPRYHLDESSLLC---RLPLPDRPIAM 560          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A388LK90_CHABU (RIC1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LK90_CHABU)

HSP 1 Score: 83.6 bits (205), Expect = 4.410e-16
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    7 DRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHG-FILLLFSRKHLSSDALM 351
            DRV L+ S       +   V+P    Y++SN P+ HV+ +  G+Y+A+AG RG  +Y+  T RWR+FG+I QER V+ AG+ W G   ++   +  +G F L  + R HL   +L+
Sbjct:  466 DRVLLIKSDEKDELTMQHLVIP--HAYMASNWPVFHVAPNDDGSYLAIAGRRGIILYNLRTKRWRVFGDISQERRVRCAGILWMGSMVVICNDKESNGGFELNFYPRYHLDDSSLL 579          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A176WQE0_MARPO (RIC1 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WQE0_MARPO)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKH-GFILLLFSRKHLSSDALM 351
            G DRV LV S       +   VLP+   Y+  N P+ HV+ +  GTY+A+AG RG  +Y     +WR+FG++ QER+VQ  G+ W G+  +V   R     + L L+ R HL   +L+
Sbjct:  400 GEDRVLLVQSDEEDQLKIQHLVLPL--SYIGVNWPVLHVAANEDGTYLAIAGRRGVILYDMQLKKWRVFGDVTQERQVQCVGLLWVGKIVVVCNYRESSKSYELSLYPRYHLDETSLL 515          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A1Q3DCI7_CEPFO (RIC1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3DCI7_CEPFO)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-15
Identity = 48/135 (35.56%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRH---KHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFM 396
            G DR+ +V S+      LL   LPV   Y+S N P++HVS S+ G Y+AVAG  G  +Y     +WR+FG++ QE+++Q  G+ W G+  +VV   +    + + LL + R HL   +L+    R P+  +P+ M
Sbjct:  425 GEDRLLVVQSEDTDELKLLHLNLPV--SYISQNWPVQHVSASKDGMYLAVAGLHGLILYDIRLKKWRVFGDVSQEQKIQCKGLLWLGK--IVVVCNYIDSSNTYELLFYPRYHLDQSSLLC---RKPLLAKPMVM 552          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A7S0BSW3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BSW3_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 3.680e-15
Identity = 40/120 (33.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLL-WRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHG--FILLLFSRKHLSSDALM 351
            GSD++ ++     + + L  W+ +P H  Y+ SN P++ V+ +   T++AVAG RGFAV+   + RWRLFG+++QER +Q   + W G+  +V     +    + +LLF R  L   +++
Sbjct:   63 GSDKLMMLGLNEDAVEELFEWQDIPFHKDYIQSNWPVQLVAVNSDLTFVAVAGQRGFAVFHLRSGRWRLFGDVKQERSIQCCALAWVGKLVVVCCEEEERPGEYEMLLFRRDFLDEASIV 182          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A022QXT0_ERYGU (RIC1 domain-containing protein n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QXT0_ERYGU)

HSP 1 Score: 80.9 bits (198), Expect = 3.790e-15
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRH---KHGFILLLFSRKHLSSDALM 351
            G DR+ +V S+      +L   LPV   Y+S N P+ HV+ SR G Y+AVAG  G  +Y     RWR+FG++ QE+++Q  G+ W G+  +VV   +    + + LL + R HL   +L+
Sbjct:  397 GEDRLLIVQSEDTDELKILHLNLPV--SYISQNWPVLHVAASRDGMYLAVAGRHGLILYDIRLKRWRVFGDVTQEQQIQCQGLLWLGK--IVVVCNYVDSSNTYELLFYPRYHLDQSSLL 512          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: UPI000C1CCCA5 (RAB6A-GEF complex partner protein 1-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CCCA5)

HSP 1 Score: 80.5 bits (197), Expect = 5.160e-15
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRH---KHGFILLLFSRKHLSSDALM 351
            G DR+ LV S+      +L   LPV   Y+S N P+ HV+ S+ G Y+AVAG  G  +Y     RWR+FG++ QE+++Q  G+ W G+  +VV   +    + + LL + R HL  ++L+
Sbjct:  364 GEDRLLLVQSEDTDELKILHLNLPV--SYISQNWPVLHVAASKDGMYLAVAGLHGLILYDIRLKRWRVFGDVTQEQQIQCRGLLWLGK--IVVVCNYIDSSNTYELLFYPRYHLDQNSLL 479          
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Match: A0A5A7RBJ7_STRAF (Quinoprotein amine dehydrogenase n=2 Tax=Orobanchaceae TaxID=91896 RepID=A0A5A7RBJ7_STRAF)

HSP 1 Score: 80.5 bits (197), Expect = 5.180e-15
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAVAGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRH---KHGFILLLFSRKHLSSDALMIPPIRLPVGMRPLFM 396
            G DR+ +V ++      +L   LPV   Y+S N P+ HV+ SR G Y+AVAG  G  +Y     RWR+FG++ QE+++Q  G+ W G+  +VV   +    + + LL + R HL   +L+    R P+  +P+ M
Sbjct:  425 GEDRLLIVHAEDTDELKILHLNLPV--SYISQNWPVLHVAASRDGMYLAVAGLHGLILYDIRLKRWRVFGDVTQEQQIQCRGLLWLGK--IVVICNYVDSSNAYELLFYPRYHLDQSSLLC---RKPLLAQPMVM 552          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13924.3065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB77_ECTSI1.810e-8298.50SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CZK3_9STRA2.520e-3346.67RIC1 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A1Y1I3Y9_KLENI4.970e-1739.10RIC1 domain-containing protein n=1 Tax=Klebsormidi... [more]
A0A388LK90_CHABU4.410e-1637.07RIC1 domain-containing protein n=1 Tax=Chara braun... [more]
A0A176WQE0_MARPO1.100e-1537.29RIC1 domain-containing protein n=2 Tax=Marchantia ... [more]
A0A1Q3DCI7_CEPFO1.100e-1535.56RIC1 domain-containing protein n=1 Tax=Cephalotus ... [more]
A0A7S0BSW3_9RHOD3.680e-1533.33Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A022QXT0_ERYGU3.790e-1536.67RIC1 domain-containing protein n=3 Tax=Erythranthe... [more]
UPI000C1CCCA55.160e-1536.67RAB6A-GEF complex partner protein 1-like n=1 Tax=O... [more]
A0A5A7RBJ7_STRAF5.180e-1534.81Quinoprotein amine dehydrogenase n=2 Tax=Orobancha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13924contigEcto-sp13_S_contig13924:535..1841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score272.7
Seed ortholog evalue9e-71
Seed eggNOG ortholog2880.D8LB77
Model size399
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-27_004900.2
Cds size399
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.1853364-CDS-Ecto-sp13_S_contig13924:534..7111681462743.1853364-CDS-Ecto-sp13_S_contig13924:534..711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13924 535..711 -
1681462743.198042-CDS-Ecto-sp13_S_contig13924:987..11371681462743.198042-CDS-Ecto-sp13_S_contig13924:987..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13924 988..1137 -
1681462743.2071784-CDS-Ecto-sp13_S_contig13924:1769..18411681462743.2071784-CDS-Ecto-sp13_S_contig13924:1769..1841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13924 1770..1841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13924.3065.1prot_Ecto-sp13_S_contig13924.3065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13924 535..1841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13924.3065.1

>prot_Ecto-sp13_S_contig13924.3065.1 ID=prot_Ecto-sp13_S_contig13924.3065.1|Name=mRNA_Ecto-sp13_S_contig13924.3065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
GSDRVALVDSQPWSAQVLLWRVLPVHPGYLSSNAPLRHVSTSRAGTYIAV
AGSRGFAVYSRPTNRWRLFGNIEQEREVQVAGMCWWGESALVVASRHKHG
FILLLFSRKHLSSDALMIPPIRLPVGMRPLFMQ
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mRNA from alignment at Ecto-sp13_S_contig13924:535..1841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13924.3065.1 ID=mRNA_Ecto-sp13_S_contig13924.3065.1|Name=mRNA_Ecto-sp13_S_contig13924.3065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13924:535..1841- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCAGACCGCGTCGCTTTGGTGGACTCGCAGCCGTGGAGCGCGCAGGT TCTCCTGTGGAGGGTGCTACCGGTAAAAACAAGAAAAAAAACGATTCTAC TTGCTTCACCCACAAGGGTGGAGGACATATTTGCCTTTAAAGCTTAGCCG TTATCGTACATGGCTTGGTTCTGGGAAGAATGCTGCGGCCTCCTCGATGC CTTCCGAGTTGTTCTTGTTGTTGTCGTTGTTGTTGTTTTCACGTTAAAAA CTACTTCGGTCTCCGCTCAGCGCCTCATAGTATCCGAATGCACTGCTATT GTTTCGTGCGTTTGTATTCGCTGGAGCTGGTCCGAATTGCGCGTGTGTCC GCTCCTTATGTTAAAAAAACACACGAGTGTTGCACCTCCGCCGCAACCAC GCGTCATACGTAAAGTGCCGCGGTCACTTTGCAATCGATCGCAAACAGTA CATCGGGAGAAGAGGTGGTGGTCGTCAAAGTGCCAAAAATGACGTCGGAT GAAACGAAATTTAGCGAAATATGTTTGAGTTGATAAAAAAGCGCAGAAGA GTAGAGGGAGAGCCCGCGCGTTCTCGTGGCGGTTCCTCTTCCGCGTACGG GCCCGAAAGGGGCTTCGTGTCTCGAAAGGGACGGCTGGTTTATGGTTTAA CAAAGACGAGGTCAACCCCCCCCACACACACACACATGCGCTGTCTGGCC ACAGGTACACCCCGGTTATCTTTCCTCCAACGCTCCGTTGCGTCACGTGA GCACGAGCCGAGCCGGGACCTACATCGCCGTGGCGGGGTCTCGAGGTTTC GCGGTTTACAGCCGGCCCACCAACCGATGGAGGCTCTTCGGGAACATCGA ACAGGTTAAGAGAAGGCCATCGAGCAGCAGCAGCAGCTGCTGCCGACCAT GTACAAAGACTGGTTTTATTCAGTTGGTGTTTTTGTAACCATCCCGTTGC GTTGTTTGTAACCCGTGATTCGCAGTTGGAACCTATCCCGCGGCGGTCTT TTCCGGCAAAGGCTGTGCCAATATTAGGTATACTCCCAGTCGAAGCATTG TTGTCTTGAAGGATATCACGCAAACAGACCAATCTGCTGTGCCCCCTGTA TGCCTGCCCCTCATTTTTTTTTCTGAACAGGAACGAGAAGTGCAAGTGGC TGGGATGTGTTGGTGGGGGGAGTCTGCCCTCGTGGTGGCGTCTCGGCATA AGCACGGCTTCATCCTGCTGCTGTTCTCGAGGAAACACTTAAGCTCGGAC GCCCTCATGATCCCACCGATACGGCTACCCGTGGGCATGCGACCCTTGTT CATGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13924:535..1841-

>mRNA_Ecto-sp13_S_contig13924.3065.1 ID=mRNA_Ecto-sp13_S_contig13924.3065.1|Name=mRNA_Ecto-sp13_S_contig13924.3065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13924:535..1841- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCAGACCGCGTCGCTTTGGTGGACTCGCAGCCGTGGAGCGCGCAGGT
TCTCCTGTGGAGGGTGCTACCGGTACACCCCGGTTATCTTTCCTCCAACG
CTCCGTTGCGTCACGTGAGCACGAGCCGAGCCGGGACCTACATCGCCGTG
GCGGGGTCTCGAGGTTTCGCGGTTTACAGCCGGCCCACCAACCGATGGAG
GCTCTTCGGGAACATCGAACAGGAACGAGAAGTGCAAGTGGCTGGGATGT
GTTGGTGGGGGGAGTCTGCCCTCGTGGTGGCGTCTCGGCATAAGCACGGC
TTCATCCTGCTGCTGTTCTCGAGGAAACACTTAAGCTCGGACGCCCTCAT
GATCCCACCGATACGGCTACCCGTGGGCATGCGACCCTTGTTCATGCAG
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