mRNA_Ecto-sp13_S_contig1392.3063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1392.3063.1
Unique NamemRNA_Ecto-sp13_S_contig1392.3063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1392.3063.1 vs. uniprot
Match: D7FP35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP35_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 1.460e-147
Identity = 252/294 (85.71%), Postives = 263/294 (89.46%), Query Frame = 1 
Query:    1 ASGKQVWADLRTEVTDVVQAQTPNLALAGSFGTKDPETATSPATTPAETPGRRFPILFVGGVFSVLAMVGLVRLFAFTARRMALTVAATWHTYLQRLVSGIVASGLRRPFARLQAELTSALPRLWGAVSNLNLRLGRVEELHRCAMNARGAMCRKARRLDETVEWLTETVLNLEAIVGETXXXXXXXXXXXXXXXXXXXXXXGGAAQLNHVTTLVNGLLTAAAQ--NHFTYEQTQTTPATGGRLRLDPEKPLHLT-VRRVLIMSEVGRHLHDDGLKHERRGGENCKQSKNGQGG 873
            ASGKQ WAD+RTE+T+VVQ QTPNLALA +FGTKDPETATSPATTPAETPGRRFP+L VGGVFSVLAMVGLVRL  FTARRMALTVAAT H YLQR++SGIVASGLRRPFARLQAELTSA+PRLWGAVS +NLRLGRVEELHRCAMNARGAMCR+  RL ETVEWLTETVLNLEA V ET XXXXXXXXXXXXXXXXXX   GGAAQLNHVTTLVNGLLTAAAQ   HFTYEQTQTTPATGGRLRL+PEKP H T VRRVL MSEV R LHD GLK ERRG EN KQSKNGQGG
Sbjct:    7 ASGKQAWADVRTEITEVVQVQTPNLALASTFGTKDPETATSPATTPAETPGRRFPLLLVGGVFSVLAMVGLVRLLTFTARRMALTVAATAHAYLQRMISGIVASGLRRPFARLQAELTSAIPRLWGAVSTINLRLGRVEELHRCAMNARGAMCRERGRLAETVEWLTETVLNLEATVSETRXXXXXXXXXXXXXXXXXXIIGGGAAQLNHVTTLVNGLLTAAAQVNRHFTYEQTQTTPATGGRLRLNPEKPFHPTAVRRVLFMSEVCRQLHD-GLKRERRGRENYKQSKNGQGG 299
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BLAST of mRNA_Ecto-sp13_S_contig1392.3063.1 vs. uniprot
Match: A0A6H5J6H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6H6_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.610e-97
Identity = 179/280 (63.93%), Postives = 183/280 (65.36%), Query Frame = 1 
Query:  202 MVGLVRLFAFTARRMALTVAATWHTYLQRLVSGIVASGLRRPFARLQAELTSALPRLWGAVSNLNLRLGRVEELHRCAMNARGAMCRKARRLDETVEWLTETVLNLEAIVGETXXXXXXXXXXXXXXXXXXXXXXGGAAQLNHVTTLVNG------------------------------------------------------LLTAAA---QNHFTYEQTQTTPATGGRLRLDPEKPLHLTVRRVLIMSEVGRHLHDDGLKHERRGGENCKQSKNGQG 870
            MVGLVRLFAFTARRMAL VAATWH YLQR VSGIVAS LRRPFARLQAELTSALPRLWGAVSNLN RLGRV+ELHRCAMNARGAMCRKAR+LDETVEWLTETVLNLEAI+ ET                      GGAAQLNHVTTL  G                                                      + T      QNHFTYEQTQTTPA GGRLRLDPEKP H TVRRVLIMSEV RHLHDDGLKHERRG ENCK SKNGQG
Sbjct:    1 MVGLVRLFAFTARRMALIVAATWHAYLQRKVSGIVASALRRPFARLQAELTSALPRLWGAVSNLNPRLGRVKELHRCAMNARGAMCRKARQLDETVEWLTETVLNLEAIISETRRLAIIS---------------GGAAQLNHVTTLDGGRARPRCGQALGRVRGKGCGASRRMRNKNRGSVRKNGGRDSGRLRCQATGQCRLEIATTGEPFLQNHFTYEQTQTTPAAGGRLRLDPEKPCHPTVRRVLIMSEVCRHLHDDGLKHERRGRENCKLSKNGQG 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1392.3063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP35_ECTSI1.460e-14785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6H6_9PHAE1.610e-9763.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1392contigEcto-sp13_S_contig1392:12979..16252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size873
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002330.1
Cds size873
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462743.0490499-CDS-Ecto-sp13_S_contig1392:12978..130801681462743.0490499-CDS-Ecto-sp13_S_contig1392:12978..13080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1392 12979..13080 +
1681462743.0603945-CDS-Ecto-sp13_S_contig1392:13563..136191681462743.0603945-CDS-Ecto-sp13_S_contig1392:13563..13619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1392 13564..13619 +
1681462743.0697784-CDS-Ecto-sp13_S_contig1392:13953..144671681462743.0697784-CDS-Ecto-sp13_S_contig1392:13953..14467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1392 13954..14467 +
1681462743.082428-CDS-Ecto-sp13_S_contig1392:16051..162521681462743.082428-CDS-Ecto-sp13_S_contig1392:16051..16252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1392 16052..16252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1392.3063.1prot_Ecto-sp13_S_contig1392.3063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1392 12979..16252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1392.3063.1

>prot_Ecto-sp13_S_contig1392.3063.1 ID=prot_Ecto-sp13_S_contig1392.3063.1|Name=mRNA_Ecto-sp13_S_contig1392.3063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
ASGKQVWADLRTEVTDVVQAQTPNLALAGSFGTKDPETATSPATTPAETP
GRRFPILFVGGVFSVLAMVGLVRLFAFTARRMALTVAATWHTYLQRLVSG
IVASGLRRPFARLQAELTSALPRLWGAVSNLNLRLGRVEELHRCAMNARG
AMCRKARRLDETVEWLTETVLNLEAIVGETRRLVATVEWLATSIVNLKAI
IGGGAAQLNHVTTLVNGLLTAAAQNHFTYEQTQTTPATGGRLRLDPEKPL
HLTVRRVLIMSEVGRHLHDDGLKHERRGGENCKQSKNGQGG
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mRNA from alignment at Ecto-sp13_S_contig1392:12979..16252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1392.3063.1 ID=mRNA_Ecto-sp13_S_contig1392.3063.1|Name=mRNA_Ecto-sp13_S_contig1392.3063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1392:12979..16252+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCCGGGAAGCAGGTGTGGGCGGACCTACGAACGGAGGTAACGGACGT
CGTTCAAGCCCAGACTCCGAACCTTGCACTTGCAGGCTCGTTCGGCACCA
AGGTTTGACAAGAAAACAGCCTTGTTCATGTTCTCCTGTGTTTCGTATAG
TCTTCACAGTCTACCAAACAGTGGACTCTTCCGTCGCACGCTTGACGCAC
ATTTCTGTAAATCAATCATAATACGAATAGGACTTGCGCTGCTCTACTGT
ACACCGTGTTCAGTCGACAGCCAGCCACGTCGAGCGCGGCCAACAAGATT
CTTTAGCTCCGGCTGTCTTCACAGCACCCTCGTACTGTACTGCGCATACG
CTTCGTCGGAGCTGCGGCAGCACACACTCTAGCCTACGTCCCCACTCCGG
TTATTGCGCTGGCTAAGGCCATGTGGATACTCGTGTCGTTGCTGCTTTCT
TCATGTACGCACACATTGAGGAGGGGAATCCCTTGGCACCCGAGACACGA
GGCTGACTCCTAGAACACTCTTTGCTCTTTGGCAATTGCCAAATGCTTTC
GCCCCCTTCCACCTCCTGCCCTATTCCTTAAATAGGATCCGGAAACCGCA
ACATCGCCGGCCACAACCCCCGCCGAGACTCCGGGACGGAGGTAAGCGCG
ATACATGCTGGCAAGCCATCGCAAGAACGATAGGTTGTACATACCCTTTT
ATGCAACTGTCCGCTGCACTGCTTGCCCGCGCATCCAGCTCTTGCAGCGC
ACCACCTACCGCTACCTTTGACCCGCATTCACGAGAATAGCATAGTCCGG
GGTGCTATCATGGTCGTGCATTGATAGCACACTTCAGGATTGACTGAAAC
TTGCGAGAAGAGAACTTCAGTCCAAACAACAACCGGGGTTGGTTACTTCT
ACCGCTGCTTGCACTGGCTGACCCTAATGTTACCGCGGATCCCATCATGA
TCGCTTCATTGGTGGTGTGGTGCAGGTTCCCAATCCTTTTCGTGGGAGGG
GTGTTCTCTGTCCTAGCGATGGTCGGCCTCGTCAGGCTGTTCGCATTCAC
CGCCCGGCGCATGGCATTGACAGTGGCGGCCACGTGGCATACATACCTGC
AGCGACTGGTATCTGGAATCGTCGCCTCCGGCCTGCGAAGGCCTTTTGCC
AGGCTCCAGGCAGAGCTCACGTCTGCCCTTCCTAGGCTGTGGGGAGCGGT
CTCGAACCTGAACCTGCGGCTGGGTCGGGTGGAGGAACTTCACCGATGCG
CCATGAACGCCCGCGGCGCCATGTGCCGCAAGGCACGTCGGCTGGATGAA
ACCGTTGAATGGCTTACAGAAACGGTTTTGAATCTCGAGGCGATAGTCGG
CGAGACACGCCGGCTGGTTGCAACGGTGGAATGGCTGGCAACATCAATTG
TGAACCTCAAAGCGATCATCGGCGGTGGGGCGGCTCAGCTTAACCATGTA
ACAACCTTGGTAAACGGCCTGCTCACCGCTGCTGCCCAGGTGAGGCGAGA
GCTTGACGACGCAAGGCAAGAGGTCGTCGACGTGACACTGCAAAGGGCCG
CGGACCAGATCACATCGATGGCGGCGATCGATAGGATGGCGGAAGAGCAC
GCCCGCGCTGTTGCCAGGCTTTGGGCCGAGAGCGAGGCAAGGGATGCGGC
GCTTCGAGACGAATGTGATACAAGAATCGCGGCAGTCGCAAGAACGGCGG
CCGAGATTCGGGCCGACTTCAACGCCAGGCTACTAGCCAATGCCGACTGG
AGGTAAATAGCTACAATGGGTAGAGGCACCCGGAGGAGGGGATCGAGATG
GCGGAGTGGGGACGTGAAGGAGTTACTGGAACTGTAGAGTGTTTGTTTGT
TGTTGTCGTATTGTAGTAGTATCGTAGTTTGGCTCGTACCCCGTGCCGTG
TGTGTGCAGCCCCGCAAATGCTTGATGAGTGCGCTGCGCCTTAGCGGCGA
GACATGTGTCTTGGCTGCGGTCTGTTGTAGCTTTTCGTGCGAAAAGAGAC
GCGACCGTTGTTTCAGCAAGTGTTGCCATCAACCTCGTGATCGATTTCCG
GGCCTCTTTGCAGCCTTTTCTCTTTTCGTTTTGCCGCTAGGGAAGAAAGT
GATCTCACAGATGTACCGGAAGACTACGTAATAAACAGCGTGTGCGAAAG
GTTTTGTTTGCACAAAGCTCGCACGTGGTGTGCGTTTTTCGCGCCCGCTC
GTATCCCCAAGGTAGCAGGAGAAAAGATTAGTCCGTACGACGGAGCAAAT
TGACGTTTGACGTTTTCGTGTTGTGCTGCAGTCCTTCTTGTTGAAGCGAC
AGATCAACAGCTCATCCACGAGTCATGCAAGCCATCTCACGCAACCGTAC
TTCGACTCATACACGACCACACACGAACCACGACTTCGCTCGCTATCTTT
GTGGCTCTGATTTTTTGTTCTGCCACATTTTGCCGGCATGGTTGTGATAC
ATCGGAAGGGTGTTTGTGAAAAACGCACTGACAAGGTGCCGTGCTCGTCG
AGCCCTAGACTTCACCATGTACAATCAATCGTCCTCCTCGTAGTTGCCCA
CTAGGTGGTCCGGAAGCTAGTCTTAGGTCCCAAGTGTGACACGGACTTCT
TGACGCACTTCGTACATTCGGTCTTCGACAACAAACTTTCATTTCTTTTC
CGACAAACGCCAACGAGGGAAGGATATTCGCCGTTTCTCTTGCTGCAAGA
ATTGCAAAACAAACACCGCGGGGGATACGAAGTTCTGTAAGCTTTCGGCT
GGAAAACGCCTTGACCCCGGCGGTTGGAAAGGACTGGGACATCAAACCAG
TCACGTTCCGATGAATACACTGCGTGAACAGCCTGGACAACAGTTCAGAC
GTGTTAGACTTACCGACTTGACTGACTGCAACTTCGCATCGTGTCTACAC
ACACGCGCGCGAACAATGACACCTGCACAGCACAGACACGCAGTGACAAT
TCTGTTCTATCGTAGTTTGTCCGAGCCTTCGAAGACCATGCAAACTTGCT
GACAGAAGCTTGTCCCTCTACCTCATTTCCTGTTCGCTCCACCTCCGGGG
CCACAGGTGAACCCTTGTCAAAGAATCACTTCACGTACGAACAAACCCAG
ACAACTCCAGCTACAGGCGGAAGGCTGAGGTTGGATCCCGAGAAACCTTT
GCACCTAACTGTGCGGAGAGTACTCATCATGAGCGAGGTCGGCCGGCACC
TACACGATGACGGCCTCAAGCACGAGCGCCGCGGTGGTGAAAACTGCAAA
CAGTCCAAGAACGGGCAGGGTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1392:12979..16252+

>mRNA_Ecto-sp13_S_contig1392.3063.1 ID=mRNA_Ecto-sp13_S_contig1392.3063.1|Name=mRNA_Ecto-sp13_S_contig1392.3063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1392:12979..16252+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCCGGGAAGCAGGTGTGGGCGGACCTACGAACGGAGGTAACGGACGT
CGTTCAAGCCCAGACTCCGAACCTTGCACTTGCAGGCTCGTTCGGCACCA
AGGATCCGGAAACCGCAACATCGCCGGCCACAACCCCCGCCGAGACTCCG
GGACGGAGGTTCCCAATCCTTTTCGTGGGAGGGGTGTTCTCTGTCCTAGC
GATGGTCGGCCTCGTCAGGCTGTTCGCATTCACCGCCCGGCGCATGGCAT
TGACAGTGGCGGCCACGTGGCATACATACCTGCAGCGACTGGTATCTGGA
ATCGTCGCCTCCGGCCTGCGAAGGCCTTTTGCCAGGCTCCAGGCAGAGCT
CACGTCTGCCCTTCCTAGGCTGTGGGGAGCGGTCTCGAACCTGAACCTGC
GGCTGGGTCGGGTGGAGGAACTTCACCGATGCGCCATGAACGCCCGCGGC
GCCATGTGCCGCAAGGCACGTCGGCTGGATGAAACCGTTGAATGGCTTAC
AGAAACGGTTTTGAATCTCGAGGCGATAGTCGGCGAGACACGCCGGCTGG
TTGCAACGGTGGAATGGCTGGCAACATCAATTGTGAACCTCAAAGCGATC
ATCGGCGGTGGGGCGGCTCAGCTTAACCATGTAACAACCTTGGTAAACGG
CCTGCTCACCGCTGCTGCCCAGAATCACTTCACGTACGAACAAACCCAGA
CAACTCCAGCTACAGGCGGAAGGCTGAGGTTGGATCCCGAGAAACCTTTG
CACCTAACTGTGCGGAGAGTACTCATCATGAGCGAGGTCGGCCGGCACCT
ACACGATGACGGCCTCAAGCACGAGCGCCGCGGTGGTGAAAACTGCAAAC
AGTCCAAGAACGGGCAGGGTGGC
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