mRNA_Ecto-sp13_S_contig1386.3017.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1386.3017.1
Unique NamemRNA_Ecto-sp13_S_contig1386.3017.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: D8LC91_ECTSI (PRF3, plastid translation release factor RF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC91_ECTSI)

HSP 1 Score: 794 bits (2050), Expect = 5.530e-286
Identity = 402/420 (95.71%), Postives = 404/420 (96.19%), Query Frame = 1
Query:   10 MNPLDGFGVGGRRAVTRRCIRPRSVLMLSCLVMTSHAFMAPGAQVRAPRQDSRCQSTSVELSEAEAEPGIEPLTEPKLAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            MNPLDGFGVGGRRAV RRCIRPRSVLMLSCLVMTSH FMAPGAQVRAPRQ S CQSTSVELSEAEAEPG        LAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGE+FKGVLDRDT TVHLFERAGRTKKATDMPELDLHDP LPELITEELHEQLLEDVEMLDELVEPLDMERVL GEQSPMFFGSAMTNFGVELFLKRFLTIGQKP+SRRMGNADVILP YNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK
Sbjct:    1 MNPLDGFGVGGRRAVARRCIRPRSVLMLSCLVMTSHGFMAPGAQVRAPRQGSPCQSTSVELSEAEAEPGTXXXXXXXLAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTKTVHLFERAGRTKKATDMPELDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLTGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPSSRRMGNADVILPGYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 420          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A6H5KH59_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH59_9PHAE)

HSP 1 Score: 622 bits (1605), Expect = 3.510e-221
Identity = 315/323 (97.52%), Postives = 317/323 (98.14%), Query Frame = 1
Query:  163 SRCQSTSVELSEAEAEPGIEPLTEPKLAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMG 1131
            SRCQSTSVELSEAEA PG EP TEPKLAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEY GNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGE+FKGVLDRDTNTVHLFERA RTKKATDMPE+DLHDP LPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMG
Sbjct:    8 SRCQSTSVELSEAEAGPGTEPKTEPKLAPVAPTTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYAGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEEFKGVLDRDTNTVHLFERAARTKKATDMPEIDLHDPKLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMG 330          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A836C6V6_9STRA (PRF3, plastid translation release factor RF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V6_9STRA)

HSP 1 Score: 523 bits (1347), Expect = 1.690e-179
Identity = 269/336 (80.06%), Postives = 292/336 (86.90%), Query Frame = 1
Query:  274 GGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRM---GNA-DVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            G QWAA   EI RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSR+DQRKATSDWMELEKQRGISITSTVLSFEY G  INLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVC+LR LPIFTF NKLDRPSLSPFELLDQIE +FG++M PVLWPIGDG +F+GVLDRDTN VHLFER  RT +A +M  L+L DP LP  I E L+ QL EDVE+L+ L+EPLDM +V  GEQSPMFFGSAM NFGVELFLKRFLT+GQ PA R +   GNA + + P+Y EFTGF FKLQANLDPRHRDRLAY+RVVSGR+EKGM+
Sbjct:   69 GAQWAAPAAEIARRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRADQRKATSDWMELEKQRGISITSTVLSFEYAGAQINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCRLRGLPIFTFCNKLDRPSLSPFELLDQIEGDFGLQMVPVLWPIGDGPNFQGVLDRDTNLVHLFERGDRTGRAKEMGTLELDDPELPIAIGETLYNQLREDVEVLEGLIEPLDMAKVHAGEQSPMFFGSAMVNFGVELFLKRFLTLGQGPAPRSISSGGNAAEQLTPEYPEFTGFCFKLQANLDPRHRDRLAYIRVVSGRFEKGMR 404          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A6S9HEF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HEF4_HETAK)

HSP 1 Score: 481 bits (1237), Expect = 4.250e-163
Identity = 244/330 (73.94%), Postives = 286/330 (86.67%), Query Frame = 1
Query:  283 WAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELI-TEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            +AA   E+ RRRNFAIISHPDAGKTT+TEKLLLYGGAIQ+AGAV++R+ QRKATSDWMELEKQRGISITSTVLSFEYDG+ INLLDTPGHQDFSEDTYRTLAAADN+VMLVDAAKGLEPQT+KLFEVC+LR LPIFTF NK+DRP+LSPF+L+DQIE EFG++M PV+WPIG+G+ FKGVL+RD+  ++LFE+  R KKA +   + L DP L  ++  ++L +QL+EDVEMLD L EPLDM RVL GEQSPMFFGSAMTNFGVE+FL+RFLT+GQ P +R    A  + P + EFTGFVFKLQANLDP+HRDRLAYVRV SG++EKGMK
Sbjct:   61 YAAPEKEVIRRRNFAIISHPDAGKTTMTEKLLLYGGAIQDAGAVKTRASQRKATSDWMELEKQRGISITSTVLSFEYDGHAINLLDTPGHQDFSEDTYRTLAAADNSVMLVDAAKGLEPQTKKLFEVCRLRGLPIFTFCNKMDRPALSPFDLVDQIEGEFGLQMCPVVWPIGNGDRFKGVLERDSGLIYLFEKGQRGKKAEETT-VRLDDPGLRGILGDDQLFDQLMEDVEMLDGLFEPLDMARVLAGEQSPMFFGSAMTNFGVEVFLRRFLTLGQAPPARTTA-AGPLAPTHPEFTGFVFKLQANLDPKHRDRLAYVRVCSGKFEKGMK 388          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A7S2WHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WHP1_9STRA)

HSP 1 Score: 471 bits (1213), Expect = 6.010e-160
Identity = 250/363 (68.87%), Postives = 286/363 (78.79%), Query Frame = 1
Query:  199 AEAEPGIEPLTEPKLAPVAPTTTSKGGQ--WAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGN----HINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            AEA PG E     K AP        GG   + A   EI+RRRN AII+HPDAGKTTLTEKLLLYGGA+Q+AGAVR+R++QR ATSDWMELE+QRGISITSTVLSFEY+      H+NLLDTPGHQDFSEDTYRTLAA DNAVMLVDAAKGLEPQTRKL EVC+L  LPIFTF NK+DRP+LSP EL+DQIE EFG+   PV+WPIGDG +F+GVLDR    V+LFER  RT KA D   + L DP+L ELI E L+ QL+EDVE+LD L+EPLDM+RV  G+QSPMFFGSAM NFGVELFLK+FL +G  P    +    V+  DY EFTGFVFKLQANLDP+HRDRLAY+R+VSGR+EKGMK
Sbjct:   56 AEAPPGTEAK---KGAPAG------GGSSLFLAPRTEIERRRNLAIIAHPDAGKTTLTEKLLLYGGALQQAGAVRTRANQRAATSDWMELEQQRGISITSTVLSFEYEHGDRQLHVNLLDTPGHQDFSEDTYRTLAACDNAVMLVDAAKGLEPQTRKLLEVCRLSGLPIFTFCNKMDRPALSPLELIDQIEGEFGLNCHPVVWPIGDGPEFQGVLDRQEGLVYLFERGDRTGKAKDKATVSLDDPDLEELIGERLYSQLMEDVEVLDGLMEPLDMDRVRDGDQSPMFFGSAMNNFGVELFLKKFLDMGTTPQPMEVPGG-VLTADYGEFTGFVFKLQANLDPKHRDRLAYIRIVSGRFEKGMK 408          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A7S2FZH2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZH2_9STRA)

HSP 1 Score: 446 bits (1148), Expect = 1.720e-149
Identity = 229/338 (67.75%), Postives = 272/338 (80.47%), Query Frame = 1
Query:  301 EIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPN-LPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMG--------NADVILP------DYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            EI+RRRN AII+HPDAGKTTLTEKLLLYGGA+Q+AGAVR+R+DQR ATSDWMELEKQRGISITSTVLSF+Y G HINLLDTPGHQDFSEDTYRTLAA+DNAV L+DAAKGLEPQTRKL EV KL  +P+FTF NK+DRP+LSPFEL+DQIE +F +   PV+WPIG GE+F+G+L+R+T TVHLFE+  RT KA DM  + L D   L +L+  +++ QLLED EMLD L+EPLD++ V+ G Q+PMFFGSAM NFGVELFL+ FL  G +P  R +           DVI+       D +EF+ FVFKLQAN+DP+HRDRLAY+RVVSGRY KGMK
Sbjct:   63 EIERRRNLAIIAHPDAGKTTLTEKLLLYGGAVQQAGAVRTRADQRAATSDWMELEKQRGISITSTVLSFDYLGKHINLLDTPGHQDFSEDTYRTLAASDNAVTLIDAAKGLEPQTRKLLEVTKLSGIPVFTFCNKMDRPALSPFELIDQIEADFKLTCVPVVWPIGMGEEFRGLLERETKTVHLFEKGIRTGKAVDMATVPLDDAETLEDLLGADVYAQLLEDAEMLDGLIEPLDLDEVMDGNQTPMFFGSAMNNFGVELFLRFFLQWGSRPQKRLISPPXXXPKATDDVIVEEEFIEADDSEFSAFVFKLQANIDPKHRDRLAYLRVVSGRYNKGMK 400          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: A0A1Z5KM76_FISSO (Peptide chain release factor 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM76_FISSO)

HSP 1 Score: 445 bits (1144), Expect = 3.250e-149
Identity = 215/338 (63.61%), Postives = 276/338 (81.66%), Query Frame = 1
Query:  259 TTTSKGGQWAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITE-ELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            ++ S    + A   EI +RRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR +++QR   SD++ +E++RGISI+STVL+F+Y    I LLDTPGHQDFSEDTYR LAA D A+ML+DAAKGLEPQTRKLFEVC+LR +P+FTFVNK+DRP+LSP++++DQIE+EFG++  P+LWPIGDG+ FKGVLDR TNTVHL+++A +     +  E+ L D  L +LI + EL+++L+ED E+L+E++ PLDMERV+IG+QSP+FFGSAMTNFGV+LFL  F  +G +P  R      +I PDY EFTGFVFK QANLDP+HRDRLAYVR+VSG+YEKGMK
Sbjct:   40 SSESSSSTYQAPLSEITKRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRHKAEQRATQSDFLAMEQERGISISSTVLNFDYQDYTIRLLDTPGHQDFSEDTYRALAATDQALMLMDAAKGLEPQTRKLFEVCQLRSIPLFTFVNKMDRPALSPYDIMDQIEQEFGLEPHPILWPIGDGDRFKGVLDRTTNTVHLYQKAEKRGAKAEATEVALDDEQLKDLIGDSELYDKLMEDAELLNEMIPPLDMERVMIGKQSPLFFGSAMTNFGVQLFLDHFCRMGTEPLGRETSKDILITPDYGEFTGFVFKTQANLDPKHRDRLAYVRIVSGKYEKGMK 377          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: B7G1B1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1B1_PHATC)

HSP 1 Score: 441 bits (1133), Expect = 6.600e-147
Identity = 220/336 (65.48%), Postives = 272/336 (80.95%), Query Frame = 1
Query:  283 WAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDP-NLPELIT-EELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRM-----GNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            + A   EIDRRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR +++QR   SD+ME+E++RGISI+STV++FEY    I L+DTPGHQDFSEDTYR LAAADNA+ML+DAAKGLEPQTRKLFEVC++R LP+FTF NK+DRP+LSP+E++DQIE EFG++  P+LWPIGDG+ FKGVLDR TN VHL+++A +      + E+ L D   L   I  EEL  +LLED E+L+EL+ PLDMERV+ GEQSP+FFGSAMTNFGV+LFL +F ++G KP  R          ++I P++ EFTGF+FK QANLDP+HRDRLAYVRVVSGRYEKGMK
Sbjct:   87 YQAPQIEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATQSDFMEMEQERGISISSTVMNFEYQDFGIRLMDTPGHQDFSEDTYRALAAADNALMLLDAAKGLEPQTRKLFEVCRMRRLPLFTFCNKMDRPALSPYEIMDQIEDEFGLETHPILWPIGDGDRFKGVLDRTTNVVHLYQKAEKRGGKAGVQEVPLEDTVTLKATIDDEELFHKLLEDAELLEELINPLDMERVMKGEQSPLFFGSAMTNFGVQLFLDKFCSMGTKPMGRMADTKSENEEEMIGPNHEEFTGFIFKTQANLDPKHRDRLAYVRVVSGRYEKGMK 422          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: B5YM78_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM78_THAPS)

HSP 1 Score: 439 bits (1129), Expect = 1.520e-146
Identity = 223/355 (62.82%), Postives = 278/355 (78.31%), Query Frame = 1
Query:  283 WAATPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKA----TDMPELDLHDPNLPELITE-ELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNAD---------------------VILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            ++A   EI+RRRN AIISHPD+GKTT+TEKLLLYGGA+Q+AGAVR + +QR   SD+ME+E+QRGISI++TV+SF+Y+  HIN+LDTPGHQDFSEDTYR LAAADNAVML+DAAKGLEPQTRKLFEVC++R+LP+FTFVNK+DRP+L+P+E++DQIE EFG++  P+LWPIGDGE FKGVLDR  N VHLF+RA R  K+      M +LD     L E I + EL ++LLED E+L+EL+ PLDMERV+ GEQSP+FFGSAMTNFGV+LFL +F  +G KP+ R     D                     +I P+Y +FTGFVFK QANLDP+HRDRLAY+R+VSG ++KGMK
Sbjct:   55 YSAPLTEINRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRMKGEQRGTQSDFMEMERQRGISISATVMSFDYNALHINILDTPGHQDFSEDTYRALAAADNAVMLLDAAKGLEPQTRKLFEVCRMRQLPLFTFVNKMDRPALTPYEIMDQIEAEFGLETHPILWPIGDGERFKGVLDRLENMVHLFDRAERGSKSEVRQVSMSDLD----TLKECINDDELFDKLLEDQELLEELINPLDMERVIAGEQSPLFFGSAMTNFGVQLFLDKFCAMGTKPSGRLAKRMDEVKGKKAKEAASSIDDDEGDELIGPEYEDFTGFVFKTQANLDPKHRDRLAYIRIVSGSFQKGMK 405          
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Match: W7TN94_9STRA (Peptide chain release factor 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN94_9STRA)

HSP 1 Score: 441 bits (1133), Expect = 3.060e-146
Identity = 221/326 (67.79%), Postives = 265/326 (81.29%), Query Frame = 1
Query:  292 TPFEIDRRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWMELEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVMLVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIEREFGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLHDPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMTNFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPRHRDRLAYVRVVSGRYEKGMK 1269
            T  ++  RR FAIISHPD+GKTTLTEKLLLYGGAI EAGAVRSR+ QRK  SD+ME+EKQRGISI+STVL+F+Y G  INLLDTPGH DF EDTYRTL+AADNA+MLVDA KGLE QTRKLFEVC+LR LPI+TFVNK+DRP+  P EL+D+IERE G+++ P++WPIGDGEDFKGV DR+   VHLFER GR +KA  +  L L DP LP+L+   L  QL EDVE+LD L+  LD+ +V+ GEQ+PMFFGSAM+NFGV LFL +FL I + PA R    A  I P++ EFTGFVFKLQANL+P+HRDR+AYVR+ SG++EKGMK
Sbjct:  150 TKSKVLERRTFAIISHPDSGKTTLTEKLLLYGGAINEAGAVRSRASQRKTQSDFMEMEKQRGISISSTVLTFDYSGFQINLLDTPGHADFGEDTYRTLSAADNALMLVDAGKGLEAQTRKLFEVCRLRGLPIYTFVNKMDRPAKGPVELVDEIEREMGLEVVPMVWPIGDGEDFKGVYDREARVVHLFERQGRKEKAAALDALPLSDPGLPKLLGSTLFAQLEEDVELLDALMPSLDVAKVMRGEQTPMFFGSAMSNFGVALFLNKFLAISEPPAPRET-TAGSIGPEHPEFTGFVFKLQANLNPKHRDRVAYVRICSGKFEKGMK 474          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1386.3017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC91_ECTSI5.530e-28695.71PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A6H5KH59_9PHAE3.510e-22197.52Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A836C6V6_9STRA1.690e-17980.06PRF3, plastid translation release factor RF3 n=1 T... [more]
A0A6S9HEF4_HETAK4.250e-16373.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WHP1_9STRA6.010e-16068.87Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2FZH2_9STRA1.720e-14967.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KM76_FISSO3.250e-14963.61Peptide chain release factor 3 n=2 Tax=Fistulifera... [more]
B7G1B1_PHATC6.600e-14765.48Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B5YM78_THAPS1.520e-14662.82Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
W7TN94_9STRA3.060e-14667.79Peptide chain release factor 3 n=2 Tax=Monodopsida... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1386contigEcto-sp13_S_contig1386:9835..14253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score798.5
Seed ortholog evalue1.5e-228
Seed eggNOG ortholog2880.D8LC91
Model size1276
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0480@1,KOG0465@2759
Ec32 ortholog descriptionPRF3, plastid translation release factor RF3
Ec32 orthologEc-14_005650.1
Cds size1266
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1386.3017.1prot_Ecto-sp13_S_contig1386.3017.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1386 9844..14253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.2499666-UTR-Ecto-sp13_S_contig1386:9834..98431681462739.2499666-UTR-Ecto-sp13_S_contig1386:9834..9843Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1386 9835..9843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462739.2656865-CDS-Ecto-sp13_S_contig1386:9843..99931681462739.2656865-CDS-Ecto-sp13_S_contig1386:9843..9993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 9844..9993 +
1681462739.273961-CDS-Ecto-sp13_S_contig1386:10879..109511681462739.273961-CDS-Ecto-sp13_S_contig1386:10879..10951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 10880..10951 +
1681462739.2819946-CDS-Ecto-sp13_S_contig1386:11206..113771681462739.2819946-CDS-Ecto-sp13_S_contig1386:11206..11377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 11207..11377 +
1681462739.290052-CDS-Ecto-sp13_S_contig1386:11888..120411681462739.290052-CDS-Ecto-sp13_S_contig1386:11888..12041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 11889..12041 +
1681462739.297555-CDS-Ecto-sp13_S_contig1386:12369..124741681462739.297555-CDS-Ecto-sp13_S_contig1386:12369..12474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 12370..12474 +
1681462739.305398-CDS-Ecto-sp13_S_contig1386:12711..128671681462739.305398-CDS-Ecto-sp13_S_contig1386:12711..12867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 12712..12867 +
1681462739.3133059-CDS-Ecto-sp13_S_contig1386:13162..133291681462739.3133059-CDS-Ecto-sp13_S_contig1386:13162..13329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 13163..13329 +
1681462739.321264-CDS-Ecto-sp13_S_contig1386:13612..137601681462739.321264-CDS-Ecto-sp13_S_contig1386:13612..13760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 13613..13760 +
1681462739.3394315-CDS-Ecto-sp13_S_contig1386:14109..142531681462739.3394315-CDS-Ecto-sp13_S_contig1386:14109..14253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1386 14110..14253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1386.3017.1

>prot_Ecto-sp13_S_contig1386.3017.1 ID=prot_Ecto-sp13_S_contig1386.3017.1|Name=mRNA_Ecto-sp13_S_contig1386.3017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp
MNPLDGFGVGGRRAVTRRCIRPRSVLMLSCLVMTSHAFMAPGAQVRAPRQ
DSRCQSTSVELSEAEAEPGIEPLTEPKLAPVAPTTTSKGGQWAATPFEID
RRRNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVRSRSDQRKATSDWME
LEKQRGISITSTVLSFEYDGNHINLLDTPGHQDFSEDTYRTLAAADNAVM
LVDAAKGLEPQTRKLFEVCKLRELPIFTFVNKLDRPSLSPFELLDQIERE
FGMKMAPVLWPIGDGEDFKGVLDRDTNTVHLFERAGRTKKATDMPELDLH
DPNLPELITEELHEQLLEDVEMLDELVEPLDMERVLIGEQSPMFFGSAMT
NFGVELFLKRFLTIGQKPASRRMGNADVILPDYNEFTGFVFKLQANLDPR
HRDRLAYVRVVSGRYEKGMKAR
back to top

mRNA from alignment at Ecto-sp13_S_contig1386:9835..14253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1386.3017.1 ID=mRNA_Ecto-sp13_S_contig1386.3017.1|Name=mRNA_Ecto-sp13_S_contig1386.3017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:9835..14253+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAAGCGAGATGAATCCGTTGGACGGGTTTGGTGTGGGCGGCAGGAGAGC TGTGACTCGAAGATGTATTCGTCCAAGATCGGTGTTGATGCTCAGTTGCC TGGTGATGACGTCTCACGCCTTCATGGCACCGGGCGCCCAAGTCCGGGCT CCGCGACAGGTGAGAGCAGTACCTCATGAAGGCATTCCCCTTAGGTGGTC GCTTCATCGTCTGGGTTCCCGTTATTCTCTCGTTGATTAGGGTGTCGTTG TCGGGTTCCGTATACACGCTTCTGTCCCTCTTTGTCGCCATCTCATCGCA CCCCCTGTGCTCGAACATGAAATTGTCACAGTCCCGTGACTGCTTGTTCG ACGTGAGGCACCCCCAATGGAACACTCTTGCGGGACACTGGAAAACTGGT ACTCTCCGCCAATCCCACGAGCAATTTGCTTGGTTTCCACCACACATAAT GTGGCCGGTACAGCAGTAGCGGACACGATGTCGCTTGTTGGGGGCAGGTC GCGGGATGTGTGAGGGATGGGTTGTTATCGTAAACCGGACATTCCAACTG CTCTACAATTGTAAATACCATCGTTTGTCCGTGCACCCCTTCATGGCTGA GTCAAGACACATCTTAATCGCAAGAGACGAGCAAGCTACGGCTGTCCGGC TTGTTGTCCCAGCAGTTAAAAGCCAATTGGCACGCGCCAAGACGGCGGTG GCACAGCCCCATCGTACTGACAAGGGCTGCACCGCTTGTTTTTTTATCTG ACACACGTGGTACACCAAACCTGGAGAAAGCTGATCTTGATTCATACGTT GCTCTGCTGGGAATTTGAGCCGAACCTTGAAGAAATGGAGACATTTGGAG ACGTACTTTATAGTTCTACGAGTAAGCAAGGTTTCCAACTGATGGTGACA GCCACCCGGCGGGAACAAAGACGATTTGCTACATGGCGCGGTCTATTCCC GATACTTGAACCCAACACGCAACAGACTGCCGACCATCCGACGACACTGC CTTACATTTCTCCCGCTTGACAACTCTGCCGCATTTTTCACGCAGGACTC TCGCTGCCAGTCCACCTCGGTGGAGCTGAGTGAAGCCGAGGCCGAACCAG GGATCGAACCATTGACGGTACGTCCTTCACGTAAGGTGTGACCTGGCTTC CGTCGTCTGTCGGGGGGGGGATGGGGGGGTACTCATAGTCGTGCATGCCG TAGTCGTTCGACCACTGACCTCGCTGTCGGGGAGGGGGGTATTCGACAAA AGACTAGACTTCGATATGCATACTCGCACCCTCTCCCGTCCTCACGTGTC CGTAAATACGCGTGGCGGTTGGGCGTGAGTACCTTTTTTGTCGATGTCTC ATTCTATCCGCCGCTACATCAGGAGCCTAAGCTAGCACCGGTGGCGCCGA CCACAACGTCCAAGGGAGGGCAGTGGGCAGCGACGCCGTTCGAGATCGAC AGGCGGCGAAATTTCGCGATTATCTCGCACCCCGACGCCGGCAAGACTAC CTTGACGGAGAAGCTTCTTCTCTACGGTGGTGCTATTCAGGAGGTATGTA TGTGTGTGTGTTTTTTTTACTCGATTGGAACGCGCGAACGATTGACCAAT GACAAGACGTCAGTCTCAGTGCGGTCAACACAAGGTTGTGTGTGTGCGGC GTGCGTGTTTTGAGCCCAGTATTTGAGATGGCGAAGCTTCTCCTTCGCGA TACCGTCATGCCAGCATTGCGAGGAAGAACACAGCCGTCGCTTGACGACA GAGGTCACGATGCTCCTTGCCCTTCGTGACTGTCTCGAGGTTCGGGCGAA ACTTGGACATTTTTTTGTCTTTACCTGGCGTGGTGGCCAAGGTTGCACAA TCGCTCGATTGATGTCGTTTGTAACGTAGTGTTGCCGCGGGCGATCTGCG TCAAGTCTTGCGCATTTGCTATCAGACTACGGGTCAGCCGCCGCACACAC ATAAGAGATTGTGTTTGTCTGCCGTTCCTGGTAACTTTTGATCTCTTCTC AGTGATGATCATAGTCCATGCACAATGCGTTCGCGCACGATATGGCCGCA ACAGGCTGGAGCCGTGCGGTCACGGTCTGATCAGCGCAAGGCGACGTCGG ACTGGATGGAGCTGGAGAAACAGAGGGGAATCTCGATCACGTCGACCGTG CTGTCCTTCGAGTACGACGGGAACCACATCAACCTGCTCGACACGCCTGG TCACCAGGTGCGCGCACGTGGATACTCGAGTTCGTGGGGGAGACCATTGG CTGTTGGTTGCACTGTGGCTGATTTCGTGGCGATAGGTCGGGCCTTTCGC GGCATGTGCCCGCCTCTCAACAAAGCGGGTTGTTACGTGGGCGAAATATG GAAGTATCAGCTTTTGTTTGTTCTGTGGGCCGAATCGTTTTCAAACATGC CGGCGTATTCGTAGCGAGGCCGTTGATACGTCATGTTTTCAACCCCGTAC GTTGTTGGTAAAAGGCACGCGTAAAATCGCTCCGTCTCTGCTGTCGTCGG ACGTATCATACGTGGGTTGTGGTGTCTGTCCGCAGGATTTTTCGGAAGAC ACGTACAGGACCCTTGCTGCCGCCGACAATGCGGTGATGTTGGTGGACGC TGCGAAAGGGCTGGAGCCGCAAACTCGCAAGCTCTTCGAGGTGAGGAGCA GGAAAGCGTGCGTAGCTTCTTTACCTGGAACACCTGCAGCTTCGGACCAT GGCGTTAGACTGTTTGCCGGAACGCGGTGTACGTACACTGTCATACACCC TTGATTGGCGGGTGTTAATGGAAACATCCTCCACTCTAAGGGGCGCGGCT TTGTTAGCAGAATATTTGCAGTAGTAATATGTTCCCCTCCCTCGCTACCG GACGGGGTGTTGCGCGTTCTCGTACAGGTGTGCAAGCTACGGGAACTCCC CATCTTCACGTTCGTGAACAAGTTGGACAGACCAAGCCTCAGTCCGTTCG AGCTGCTGGACCAAATCGAGCGAGAGTTCGGCATGAAGATGGCCCCTGTG TTGTGGCCTATCGGCGACGGCGAAGACTTCAAGGTAAGCTCTTTGATGGC GACAAACGTCGCGGGAGGGGAGTGACTTCGTCGGTGCTCTTTCGCAGCCT GCTAGGCGAGTTCGGTCGAAACACCTCCTTTGCGGCACCAGGTTTCCCCT TGCCACTTCGACGAACGGTCCTGGTTGAAATATCTGCGGCCGTGTTTCAA ACCTCTGGGCAGGCCGTTGTTGTAGATGAAGAGAGGTACGGCAAGTCAGG GGGAGCCGAACTTTTCCACTGAGTGGCGACGACGACACCACCGGCGTGAC CGTTTCGTGCGTTTCCGACGCTGCGCAGGGGGTGCTGGATCGCGATACGA ACACGGTGCACCTGTTCGAGAGGGCTGGCCGCACCAAGAAAGCGACAGAC ATGCCGGAGCTCGACCTGCACGACCCCAACCTTCCGGAGCTGATCACGGA AGAGCTACACGAGCAGCTCCTGGAAGATGTCGAGATGCTCGACGAGTGAG TTGCAACCGCCAGAGAGGTCGTGCTTCAAAAGGCAGAATTGGTGTCGCCT CATAAAGCAGCCTTCGTTTTGCTTTTTGAATCAGTATTTGTTTCCCTCCA CAGCCCCCCGAGGACTGCGTTTGCGCAAGCGACCCCGAAAACACAAAACA CTAAGCGAATCTTACTGGCTTGAAACAACGGCTACCGGACGATCGTTGCG ATTTGGGCAAGCTGAGGAGTCGATTTTAACACTCTCTTCCCTGTGTTGCT CTGCATACCATGGAACGTTTCCCGCCAGACTCGTGGAGCCCCTGGACATG GAGCGCGTCCTCATCGGGGAGCAGAGCCCCATGTTCTTCGGGTCGGCGAT GACCAACTTCGGCGTGGAGCTCTTCCTGAAGCGTTTCCTCACGATCGGGC AGAAGCCTGCGTCTCGACGAATGGGGGTGAGATAGATCTGTCCAGGGTTG CCTGGTTCGTAGGCAGGACCGCAAGCGGGGTGACCAAGCCGATCGCTATG TATGTAGGCTCTCGAACCAGGAAGATGCTGTTGGTGGTTGACTTTCTTGT CTCCTCTTGAGCGGGGAAAGCCACTCGCATTTGGCACGCTGCTCTTGCGG GTAAGTTGAGACACCTGTCCGTTGTGTGAGATGTTTTGGCCCGTGTTGCA AGCATCGCCGATTGCACCTGTGGTGTTGAGTCGGTTGGATACACACGAGA TGCTTCACATTGTTTTGACGGTCGCGTCCACCACACTCTGTCCCCCCGTA CGCTCTTGCTGGTGCTATCGCAAAGAATGCCGACGTGATTTTACCTGACT ACAACGAATTCACGGGGTTCGTGTTCAAGCTGCAAGCCAACTTGGACCCA CGTCACCGGGACCGTCTGGCCTACGTTCGGGTGGTCTCCGGGCGCTACGA AAAGGGGATGAAGGCGAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1386:9835..14253+

>mRNA_Ecto-sp13_S_contig1386.3017.1 ID=mRNA_Ecto-sp13_S_contig1386.3017.1|Name=mRNA_Ecto-sp13_S_contig1386.3017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:9835..14253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCCGTTGGACGGGTTTGGTGTGGGCGGCAGGAGAGCTGTGACTCG
AAGATGTATTCGTCCAAGATCGGTGTTGATGCTCAGTTGCCTGGTGATGA
CGTCTCACGCCTTCATGGCACCGGGCGCCCAAGTCCGGGCTCCGCGACAG
GACTCTCGCTGCCAGTCCACCTCGGTGGAGCTGAGTGAAGCCGAGGCCGA
ACCAGGGATCGAACCATTGACGGAGCCTAAGCTAGCACCGGTGGCGCCGA
CCACAACGTCCAAGGGAGGGCAGTGGGCAGCGACGCCGTTCGAGATCGAC
AGGCGGCGAAATTTCGCGATTATCTCGCACCCCGACGCCGGCAAGACTAC
CTTGACGGAGAAGCTTCTTCTCTACGGTGGTGCTATTCAGGAGGCTGGAG
CCGTGCGGTCACGGTCTGATCAGCGCAAGGCGACGTCGGACTGGATGGAG
CTGGAGAAACAGAGGGGAATCTCGATCACGTCGACCGTGCTGTCCTTCGA
GTACGACGGGAACCACATCAACCTGCTCGACACGCCTGGTCACCAGGATT
TTTCGGAAGACACGTACAGGACCCTTGCTGCCGCCGACAATGCGGTGATG
TTGGTGGACGCTGCGAAAGGGCTGGAGCCGCAAACTCGCAAGCTCTTCGA
GGTGTGCAAGCTACGGGAACTCCCCATCTTCACGTTCGTGAACAAGTTGG
ACAGACCAAGCCTCAGTCCGTTCGAGCTGCTGGACCAAATCGAGCGAGAG
TTCGGCATGAAGATGGCCCCTGTGTTGTGGCCTATCGGCGACGGCGAAGA
CTTCAAGGGGGTGCTGGATCGCGATACGAACACGGTGCACCTGTTCGAGA
GGGCTGGCCGCACCAAGAAAGCGACAGACATGCCGGAGCTCGACCTGCAC
GACCCCAACCTTCCGGAGCTGATCACGGAAGAGCTACACGAGCAGCTCCT
GGAAGATGTCGAGATGCTCGACGAACTCGTGGAGCCCCTGGACATGGAGC
GCGTCCTCATCGGGGAGCAGAGCCCCATGTTCTTCGGGTCGGCGATGACC
AACTTCGGCGTGGAGCTCTTCCTGAAGCGTTTCCTCACGATCGGGCAGAA
GCCTGCGTCTCGACGAATGGGGAATGCCGACGTGATTTTACCTGACTACA
ACGAATTCACGGGGTTCGTGTTCAAGCTGCAAGCCAACTTGGACCCACGT
CACCGGGACCGTCTGGCCTACGTTCGGGTGGTCTCCGGGCGCTACGAAAA
GGGGATGAAGGCGAGA
back to top