mRNA_Ecto-sp13_S_contig1386.3016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI) HSP 1 Score: 530 bits (1366), Expect = 5.370e-188 Identity = 265/270 (98.15%), Postives = 265/270 (98.15%), Query Frame = 1
Query: 4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 813
MNNCY PLAAPAQND KSKRRDRDGKAPNGTATKEPSL STTR DGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRE RGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK
Sbjct: 1 MNNCYKPLAAPAQNDAKSKRRDRDGKAPNGTATKEPSLASTTREDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 270
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA) HSP 1 Score: 245 bits (626), Expect = 5.290e-76 Identity = 138/275 (50.18%), Postives = 179/275 (65.09%), Query Frame = 1
Query: 4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTR------GDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 810
M NCYTP AP P A +E + ++R GDGR ++R+VY+D+GVV+ A+GSAY+E +HTKVICAVYGPHAQ+ D+AFSEEGQL+CD APFA P R E RG + D+ERELS L+Q LE+S+++ LTK+ V V+V VL ADGG L A TCAS+ALA+A IEL+DLV AC+ Q++LDPT +EE + G + +A+MP S++VTQW Q GR + A A+ELC DGC V MM A+L A K
Sbjct: 1 MLNCYTPRRAP----------------PAAVAVEEQTSADSSRKRPEHRGDGRKASELRRVYLDLGVVSQASGSAYLELDHTKVICAVYGPHAQSM-DTAFSEEGQLKCDLRMAPFAQPK-RSEVRG-QTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLAQVDK 256
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA) HSP 1 Score: 234 bits (598), Expect = 2.560e-71 Identity = 128/263 (48.67%), Postives = 173/263 (65.78%), Query Frame = 1
Query: 94 TATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPG---------GRREARGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCG-TQMVLDPTK---------EEEKSG----------AGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 792
T +E ++ +R DGR +MR+V++DVG+++ A+GSAY+E N TKVIC + GPHA + D FSE+GQL+ D YAPFA G RR+ ++ D ER+ S L+RQ LE+SIQ+H L KS++ V++ VLQADGGEL A TCAS+AL+DAGIEL+DLV CSVG G ++++LDPT+ E+ SG AGVMT+ P SQ+VTQWWQEG+FD + +A L LC DGC +HK+M+ KL
Sbjct: 13 TDEQERTIIKPSRADGRDDKEMRKVFIDVGILSCASGSAYIELNMTKVICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD) HSP 1 Score: 206 bits (525), Expect = 1.040e-60 Identity = 123/270 (45.56%), Postives = 168/270 (62.22%), Query Frame = 1
Query: 4 MNNCYTPL-AAPAQNDGKSKRRDRDGKAPNGTATKEPS---LTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK-MMEAKL 792
M NCY P+ A PA+ G +K +D A +P L R D R+ D +RQ +M +GVV+ A+GSAYVEFN T+V+C+VYGP T FS EGQL CDF YAPFA P GRRE G+ DE E+S++L Q L ++ + +L K VV ++V+VL++DGGELA A CAS+AL DA +E+YD+VTA G +++VLDP +EE G G + +A MP +VT Q G+ + ++ EA++LCTD C V K +M A L
Sbjct: 1 MQNCYFPVNAKPARAHGAAKDKD---------AAVDPIKALLEKAVRLDELRSSSDELRQAFMKLGVVSGASGSAYVEFNRTRVVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLMTASL 259
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL) HSP 1 Score: 205 bits (522), Expect = 2.300e-60 Identity = 117/259 (45.17%), Postives = 158/259 (61.00%), Query Frame = 1
Query: 4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK 774
M NCY P A + G ++ + D + + T R D RA D MR +M +GVV+ A GSAYVEFN T+V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE E+S++L Q L ++ + +L K VV ++V+VL++DG +LA A CAS+AL DA +E+YD+VTA S G +Q+VLDP EEE G G + +A MP Q+T Q G+ ++ EA++LCTD C V K
Sbjct: 1 MQNCYFPAIAKPRGGGDAQSKQDD----------QVMIDKTLRLDRIRASADEMRPAFMRLGVVSGAAGSAYVEFNRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMK 247
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN) HSP 1 Score: 199 bits (506), Expect = 6.890e-58 Identity = 116/264 (43.94%), Postives = 156/264 (59.09%), Query Frame = 1
Query: 4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG--RAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEA 786
M NCY P AA A S D + + T R D R+ +MR +M +GVV+ A GSAYVEF+ T+V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE ELS++L Q L ++ + +L K VV + V+VL++DGGELA A CAS+AL DA +E+YD+VTA S +++VLDP EE G G + +A MP ++T Q GR ++ EA++LCT C G + M+ A
Sbjct: 1 MQNCYFPXAAVAPERSSSTDATSD--------AQRALIDKTLRLDRVRRSADEMRPTFMKLGVVSGAAGSAYVEFHRTRVVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNMLTA 254
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT) HSP 1 Score: 194 bits (492), Expect = 5.330e-56 Identity = 112/270 (41.48%), Postives = 155/270 (57.41%), Query Frame = 1
Query: 4 MNNCYTPL------AAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 792
M NCY PL AAP +D +R D+ S T D +MR+ +M +G V+ A GSAYVE T+V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L ++ +H+L K ++ V V +L+ DGG LA A CAS+ALADA +E+YD+VTA S G +VLDP++EEE+ G G + +A MP +VT Q G+ ++ EA++LCTD C G + ++ A L
Sbjct: 1 MQNCYYPLPVQPQLAAPKDDDAPMERLDK----------------SRTSSD-----EMRRPFMQLGAVSGAAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: L8HCU8_ACACA (3' exoribonuclease family, domain 1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCU8_ACACA) HSP 1 Score: 191 bits (484), Expect = 1.590e-54 Identity = 103/230 (44.78%), Postives = 147/230 (63.91%), Query Frame = 1
Query: 136 DGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK*PLE 825
DGR+P + R V++ GV++ A GSAY+E N TKVIC VYGP QT + +SE+G+L C F A FA G RR+ K +E+ELS L+ Q LE S+++ KS + V V+VL+ GG + A T AS+ALADAGIE+YDLV +CSVG + ++LDP+ EEK+ + +A+MP + ++TQ Q G + K EA+ELC DGC +++MM L + +K +E
Sbjct: 41 DGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPR-QTP-KTVYSEKGKLNCFFKLATFAENGERRKYVSDK--EEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLETAAQKLSME 266
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: A0A5D6XTG5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTG5_9STRA) HSP 1 Score: 188 bits (477), Expect = 9.640e-54 Identity = 110/271 (40.59%), Postives = 158/271 (58.30%), Query Frame = 1
Query: 4 MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDG-RAPYD-MRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKLKASTT 807
M NCY P+AA A P+ L S R DG RA D +R ++ +GVV+ A GSAYVE T+V+C+ +GP T FS +GQL CD +APFA GRRE + DE ELS +L Q L ++ +H+L K V+ ++V+VL++DGGELA A CAS+AL DA +E+YD+VTA + G ++VLDP ++E+ G G + +A MP + +VT Q G+ ++ EA++LCTD C G + ++ A L + T
Sbjct: 1 MQNCYFPVAAAA---------------PDARDPVRALLESARRLDGARASSDELRAAFLQLGVVSGAAGSAYVELGRTRVVCSAFGPRNDTRSRREFSNQGQLVCDVKFAPFADRVGRRER--AQDADELELSAVLAQALAPAVMLHKLPKCVMSLYVVVLESDGGELAAAINCASLALVDAAVEMYDIVTAAAAGVVNGKVVLDPCQQEQLHGDGHVVLAYMPTADKVTYMLQAGKIQHAQLQEAVDLCTDACTGVMKTLVTASLLQAAT 254
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM) HSP 1 Score: 187 bits (476), Expect = 1.280e-53 Identity = 98/214 (45.79%), Postives = 136/214 (63.55%), Query Frame = 1
Query: 154 DMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRREARGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 792
+MR+ +M +G V+ A GSAYVE T+V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L ++ +H+L K V+ + V VL+ DGG A A CAS+ALADA +E+YD+VTA S G + +VLDP++EEE+ G G M +A MP +VT Q G+ ++ EA++LCTD C G ++ A L
Sbjct: 36 EMRRSFMQLGAVSGAAGSAYVELGRTRVVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1386.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1386.3016.1 >prot_Ecto-sp13_S_contig1386.3016.1 ID=prot_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp MNNCYTPLAAPAQNDGKSKRRDRDGKAPNGTATKEPSLTSTTRGDGRAPYback to top mRNA from alignment at Ecto-sp13_S_contig1386:6497..8867- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1386.3016.1 ID=mRNA_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:6497..8867- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1386:6497..8867- >mRNA_Ecto-sp13_S_contig1386.3016.1 ID=mRNA_Ecto-sp13_S_contig1386.3016.1|Name=mRNA_Ecto-sp13_S_contig1386.3016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1386:6497..8867- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |