mRNA_Ecto-sp13_S_contig13840.3003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI) HSP 1 Score: 322 bits (824), Expect = 2.340e-102 Identity = 159/169 (94.08%), Postives = 160/169 (94.67%), Query Frame = 1
Query: 1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 507
IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNV LEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQ+DADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP
Sbjct: 633 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVK-------ELEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQMDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 794
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A6H5JBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ8_9PHAE) HSP 1 Score: 214 bits (546), Expect = 1.250e-65 Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 1
Query: 1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDT 441
+PFEAVDVWVPLC++DQEGSEVVLFHAGYFTNV L+EWGDYSTNFSFRQGQG+PGRV+ +N+SE+ ENVVNL+ + FLRLNGA IGI TSF +PVVSRWGVTFVIVFY+R +Q+DA+ K FIE V W+ DATVDT
Sbjct: 146 VPFEAVDVWVPLCDRDQEGSEVVLFHAGYFTNVK-------ELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQLDAEKKVFIENMVRGWELDATVDT 285
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI8_ECTSI) HSP 1 Score: 186 bits (472), Expect = 9.100e-55 Identity = 91/131 (69.47%), Postives = 107/131 (81.68%), Query Frame = 1
Query: 1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAF 393
+PFEAVDVWVPLC++DQEGS+VVLFHAGYFTNV L+EWGDYSTNFSFRQGQG+PGRV+ +N+SE+ ENVVNL+ + FLRLNGA IGI TSF +PVVSRWGVTFVIVFY+R +Q + AF
Sbjct: 192 VPFEAVDVWVPLCDRDQEGSDVVLFHAGYFTNVK-------ELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQGEKRESAF 315
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.140e-53 Identity = 98/146 (67.12%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVD 438
+PFEAVDVWVPL Q+ G VVLFHAGYFTN LEEWG+YSTNFSF +G+GLPGRV+ +N SEWQE+V L H FLRLNGA+ GIRT+FGVPVVSR GVTFVIVFYSR V V+ ++AFIERTV +WKFDA VD
Sbjct: 489 VPFEAVDVWVPLARQET-GGRVVLFHAGYFTN---------ELEEWGEYSTNFSFEKGEGLPGRVFGSNTSEWQEDVHLLGHNMFLRLNGAIKTGIRTTFGVPVVSRRGVTFVIVFYSRKTVHVNPALRAFIERTVRSWKFDANVD 624
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1Z5KJS1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJS1_FISSO) HSP 1 Score: 103 bits (257), Expect = 4.970e-22 Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1
Query: 1 IPFEAVDVWVP-LCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAK 480
+PFE VD+WVP D G+E+ L+HAG T L + + E+G+YST FSF G GLPGRVY +K W+ ++ + F R GA G++T FGVPVVS+ V+VFYS +Q D M I ++S + V GD+ P ++
Sbjct: 415 LPFEHVDLWVPSFAEGDGPGNEMRLYHAGQGTRGDLDASLYYRMCEYGEYSTKFSFAVGHGLPGRVYCTDKPSWERHIHEQDPKIFERAGGAKMYGVKTGFGVPVVSKSIGRIVVVFYSVHDIQPDLQMMERIVASLSKYSPTPKWKLVVEMGDSKPVPSQ 575
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1Z5KSW9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSW9_FISSO) HSP 1 Score: 94.0 bits (232), Expect = 1.070e-18 Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 1 IPFEAVDVWVP-LCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSA 414
+PFE VD+WVP + G+E+ L+H G T L + + E+G+YST FSF G GLPGRVY+ + W+ ++ + F R GA G++T FGVPV+S+ V+VFYS + D M +ER V+A
Sbjct: 415 LPFEHVDLWVPSFAEGNGPGNEMRLYHGGQGTRGDLDASLYYRMCEYGEYSTRFSFAVGHGLPGRVYSTDMPSWERHIHEQDPKIFERAGGARMYGVKTGFGVPVLSKSIGRIVVVFYSVHDIPQDLQM---MERIVAA 550
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A7S2WGT5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGT5_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.330e-12 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query: 1 IPFEAVDVWVP--LCNQDQEGS-------EVVLFHAGYFT------------NVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYS 354
+PFE +D WVP + N + GS + L AG + L+ + +L+ +G+YS NFSF G GLPGRVY + + W+++V N H HF R GA + G+RT G+PV S VIV YS
Sbjct: 275 VPFEHIDAWVPSFVPNGETSGSGCNVGDTDCRLCFAGSASAALQQSPNNEQMTTPLTQDQFTNLKAFGEYSQNFSFNIGCGLPGRVYQSGIATWEQSVHNAPHHHFERCGGAKSWGVRTVVGIPVPSPNVGRIVIVMYS 413
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1H9K2K9_9EURY (PAS domain S-box-containing protein n=1 Tax=Natrinema salaciae TaxID=1186196 RepID=A0A1H9K2K9_9EURY) HSP 1 Score: 63.2 bits (152), Expect = 4.630e-8 Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 127 LEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVD 375
L E+ +S +F+F +G+GLPGRV+A+ + EW ++ N + F RL+ A+++G+++S GVPVVS V V+ F R + D
Sbjct: 404 LTEFAAFSESFTFARGEGLPGRVWASGEFEWAADLSNGSRDEFPRLDEALDVGLQSSVGVPVVSDDTVVAVLTFIVRTPRETD 486
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A844GSM8_9CHRO (EAL domain-containing protein n=3 Tax=Cyanobacterium TaxID=102234 RepID=A0A844GSM8_9CHRO) HSP 1 Score: 61.6 bits (148), Expect = 1.510e-7 Identity = 38/137 (27.74%), Postives = 71/137 (51.82%), Query Frame = 1
Query: 7 FEAVDVWVPLCNQDQEGSEVVLFHAG--YFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVS 411
++ +VW+P + V + YF N L+ L ++ +S +FSF +GLPG+V+A K+ W +N+ +HF R N A G++T+ G+PV+ + + VF++ ++ ++ D+ F+E S
Sbjct: 314 WDFAEVWLPNFEGNVYNYSVAWYRKDNPYFDNFPLA------LADFQQHSYDFSFHFEEGLPGKVWAERKAIWWQNIHR--DSHFRRKNYAKQSGLKTALGIPVMVGDEIIAIFVFFTHKSLSINYDLINFLETITS 442
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A6P1AJ46_9CYAN (PAS domain S-box protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P1AJ46_9CYAN) HSP 1 Score: 61.2 bits (147), Expect = 1.920e-7 Identity = 33/123 (26.83%), Postives = 69/123 (56.10%), Query Frame = 1
Query: 43 QDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVS 411
Q ++G E+++ + ++ + SL ++ S NF+F + +G+PGRV+A+ K+EW +V + A FLR++ A + ++ + GVP+++ + ++VF+S A+ D + + S
Sbjct: 171 QIKKGEEILILNPAWYGDNP-------SLGKFRQGSKNFTFTKSEGVPGRVWASRKAEWNNDVSLCSKADFLRVDLAKEVKLKGALGVPIIANEKIVAILVFFSLKALTEDERLVEIVTSVAS 286 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13840.3003.1 >prot_Ecto-sp13_S_contig13840.3003.1 ID=prot_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFback to top mRNA from alignment at Ecto-sp13_S_contig13840:661..2894+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13840.3003.1 ID=mRNA_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13840:661..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13840:661..2894+ >mRNA_Ecto-sp13_S_contig13840.3003.1 ID=mRNA_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13840:661..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |