mRNA_Ecto-sp13_S_contig13840.3003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13840.3003.1
Unique NamemRNA_Ecto-sp13_S_contig13840.3003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 2.340e-102
Identity = 159/169 (94.08%), Postives = 160/169 (94.67%), Query Frame = 1
Query:    1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 507
            IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNV         LEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQ+DADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP
Sbjct:  633 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVK-------ELEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQMDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAKPPGPAGIRP 794          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A6H5JBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ8_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.250e-65
Identity = 104/147 (70.75%), Postives = 121/147 (82.31%), Query Frame = 1
Query:    1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDT 441
            +PFEAVDVWVPLC++DQEGSEVVLFHAGYFTNV         L+EWGDYSTNFSFRQGQG+PGRV+ +N+SE+ ENVVNL+ + FLRLNGA  IGI TSF +PVVSRWGVTFVIVFY+R  +Q+DA+ K FIE  V  W+ DATVDT
Sbjct:  146 VPFEAVDVWVPLCDRDQEGSEVVLFHAGYFTNVK-------ELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQLDAEKKVFIENMVRGWELDATVDT 285          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: D8LLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI8_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 9.100e-55
Identity = 91/131 (69.47%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAF 393
            +PFEAVDVWVPLC++DQEGS+VVLFHAGYFTNV         L+EWGDYSTNFSFRQGQG+PGRV+ +N+SE+ ENVVNL+ + FLRLNGA  IGI TSF +PVVSRWGVTFVIVFY+R  +Q +    AF
Sbjct:  192 VPFEAVDVWVPLCDRDQEGSDVVLFHAGYFTNVK-------ELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQGEKRESAF 315          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.140e-53
Identity = 98/146 (67.12%), Postives = 112/146 (76.71%), Query Frame = 1
Query:    1 IPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVD 438
            +PFEAVDVWVPL  Q+  G  VVLFHAGYFTN          LEEWG+YSTNFSF +G+GLPGRV+ +N SEWQE+V  L H  FLRLNGA+  GIRT+FGVPVVSR GVTFVIVFYSR  V V+  ++AFIERTV +WKFDA VD
Sbjct:  489 VPFEAVDVWVPLARQET-GGRVVLFHAGYFTN---------ELEEWGEYSTNFSFEKGEGLPGRVFGSNTSEWQEDVHLLGHNMFLRLNGAIKTGIRTTFGVPVVSRRGVTFVIVFYSRKTVHVNPALRAFIERTVRSWKFDANVD 624          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1Z5KJS1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJS1_FISSO)

HSP 1 Score: 103 bits (257), Expect = 4.970e-22
Identity = 62/161 (38.51%), Postives = 87/161 (54.04%), Query Frame = 1
Query:    1 IPFEAVDVWVP-LCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKFDATVDTDVCQGDAAPATAK 480
            +PFE VD+WVP     D  G+E+ L+HAG  T   L    +  + E+G+YST FSF  G GLPGRVY  +K  W+ ++   +   F R  GA   G++T FGVPVVS+     V+VFYS   +Q D  M   I  ++S +         V  GD+ P  ++
Sbjct:  415 LPFEHVDLWVPSFAEGDGPGNEMRLYHAGQGTRGDLDASLYYRMCEYGEYSTKFSFAVGHGLPGRVYCTDKPSWERHIHEQDPKIFERAGGAKMYGVKTGFGVPVVSKSIGRIVVVFYSVHDIQPDLQMMERIVASLSKYSPTPKWKLVVEMGDSKPVPSQ 575          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1Z5KSW9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSW9_FISSO)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-18
Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 IPFEAVDVWVP-LCNQDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSA 414
            +PFE VD+WVP     +  G+E+ L+H G  T   L    +  + E+G+YST FSF  G GLPGRVY+ +   W+ ++   +   F R  GA   G++T FGVPV+S+     V+VFYS   +  D  M   +ER V+A
Sbjct:  415 LPFEHVDLWVPSFAEGNGPGNEMRLYHGGQGTRGDLDASLYYRMCEYGEYSTRFSFAVGHGLPGRVYSTDMPSWERHIHEQDPKIFERAGGARMYGVKTGFGVPVLSKSIGRIVVVFYSVHDIPQDLQM---MERIVAA 550          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A7S2WGT5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGT5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.330e-12
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query:    1 IPFEAVDVWVP--LCNQDQEGS-------EVVLFHAGYFT------------NVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYS 354
            +PFE +D WVP  + N +  GS       +  L  AG  +               L+   + +L+ +G+YS NFSF  G GLPGRVY +  + W+++V N  H HF R  GA + G+RT  G+PV S      VIV YS
Sbjct:  275 VPFEHIDAWVPSFVPNGETSGSGCNVGDTDCRLCFAGSASAALQQSPNNEQMTTPLTQDQFTNLKAFGEYSQNFSFNIGCGLPGRVYQSGIATWEQSVHNAPHHHFERCGGAKSWGVRTVVGIPVPSPNVGRIVIVMYS 413          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A1H9K2K9_9EURY (PAS domain S-box-containing protein n=1 Tax=Natrinema salaciae TaxID=1186196 RepID=A0A1H9K2K9_9EURY)

HSP 1 Score: 63.2 bits (152), Expect = 4.630e-8
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  127 LEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVD 375
            L E+  +S +F+F +G+GLPGRV+A+ + EW  ++ N +   F RL+ A+++G+++S GVPVVS   V  V+ F  R   + D
Sbjct:  404 LTEFAAFSESFTFARGEGLPGRVWASGEFEWAADLSNGSRDEFPRLDEALDVGLQSSVGVPVVSDDTVVAVLTFIVRTPRETD 486          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A844GSM8_9CHRO (EAL domain-containing protein n=3 Tax=Cyanobacterium TaxID=102234 RepID=A0A844GSM8_9CHRO)

HSP 1 Score: 61.6 bits (148), Expect = 1.510e-7
Identity = 38/137 (27.74%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    7 FEAVDVWVPLCNQDQEGSEVVLFHAG--YFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVS 411
            ++  +VW+P    +     V  +     YF N  L+      L ++  +S +FSF   +GLPG+V+A  K+ W +N+     +HF R N A   G++T+ G+PV+    +  + VF++  ++ ++ D+  F+E   S
Sbjct:  314 WDFAEVWLPNFEGNVYNYSVAWYRKDNPYFDNFPLA------LADFQQHSYDFSFHFEEGLPGKVWAERKAIWWQNIHR--DSHFRRKNYAKQSGLKTALGIPVMVGDEIIAIFVFFTHKSLSINYDLINFLETITS 442          
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Match: A0A6P1AJ46_9CYAN (PAS domain S-box protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P1AJ46_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 1.920e-7
Identity = 33/123 (26.83%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   43 QDQEGSEVVLFHAGYFTNVSLSVKGWGSLEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVS 411
            Q ++G E+++ +  ++ +         SL ++   S NF+F + +G+PGRV+A+ K+EW  +V   + A FLR++ A  + ++ + GVP+++   +  ++VF+S  A+  D  +   +    S
Sbjct:  171 QIKKGEEILILNPAWYGDNP-------SLGKFRQGSKNFTFTKSEGVPGRVWASRKAEWNNDVSLCSKADFLRVDLAKEVKLKGALGVPIIANEKIVAILVFFSLKALTEDERLVEIVTSVAS 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13840.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LER0_ECTSI2.340e-10294.08RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBQ8_9PHAE1.250e-6570.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLI8_ECTSI9.100e-5569.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCD8_9STRA1.140e-5367.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KJS1_FISSO4.970e-2238.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KSW9_FISSO1.070e-1839.57Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2WGT5_9STRA3.330e-1236.69Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1H9K2K9_9EURY4.630e-839.76PAS domain S-box-containing protein n=1 Tax=Natrin... [more]
A0A844GSM8_9CHRO1.510e-727.74EAL domain-containing protein n=3 Tax=Cyanobacteri... [more]
A0A6P1AJ46_9CYAN1.920e-726.83PAS domain S-box protein n=2 Tax=Oscillatoriales T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13840contigEcto-sp13_S_contig13840:661..2894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score157.9
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog2880.D8LER0
Model size626
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Ring finger
EggNOG OGs28HE3@1,2RTIT@2759
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13840.3003.1prot_Ecto-sp13_S_contig13840.3003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13840 2056..2778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.3286953-UTR-Ecto-sp13_S_contig13840:660..7861681462738.3286953-UTR-Ecto-sp13_S_contig13840:660..786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13840 661..786 +
1681462738.3408322-UTR-Ecto-sp13_S_contig13840:1466..15621681462738.3408322-UTR-Ecto-sp13_S_contig13840:1466..1562Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13840 1467..1562 +
1681462738.348827-UTR-Ecto-sp13_S_contig13840:2004..20551681462738.348827-UTR-Ecto-sp13_S_contig13840:2004..2055Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13840 2005..2055 +
1681462738.375478-UTR-Ecto-sp13_S_contig13840:2778..28941681462738.375478-UTR-Ecto-sp13_S_contig13840:2778..2894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13840 2779..2894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.356728-CDS-Ecto-sp13_S_contig13840:2055..21511681462738.356728-CDS-Ecto-sp13_S_contig13840:2055..2151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13840 2056..2151 +
1681462738.3676803-CDS-Ecto-sp13_S_contig13840:2637..27781681462738.3676803-CDS-Ecto-sp13_S_contig13840:2637..2778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13840 2638..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13840.3003.1

>prot_Ecto-sp13_S_contig13840.3003.1 ID=prot_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQVDADMKAFIERTVSAWKF
DATVDTDVCQGDAAPATAKPPGPAGIRP*
back to top

mRNA from alignment at Ecto-sp13_S_contig13840:661..2894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13840.3003.1 ID=mRNA_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13840:661..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCCTTCGAAGCCGTCGACGTCTGGGTGCCGCTGTGCAACCAAGACCA GGAGGGAAGCGAAGTCGTGCTGTTCCACGCCGGGTACTTCACCAATGTGA GCCTGAGCGTCAAGGGGTGGGGTTCGGTTTTTCTGTAGTTTTGTGGTCAG CCCTGTTTTTGGATGCCAAGATACGTGCAAGGAAGTTTTGACGACCATTT AGCGTTTTGGTTTGATGTACCATAGCAGACATGCCTTGAGGTTTGATGTA CATACAGCGGTAGATTGAGAGGATTCAGGAGCCTTTCCCACCGAGGTGTC GTTCGGTATTCTTCCCACGTCGACCCGGCAATGCAACAGTCAGCGGTGCA TCGTGGCCATGGTTTGGCATCTCTCAATGTGCTACCTACCCTTGCCGGCT TCGTCGCAAATTGCTTGCGCTTAGAAACCTCTTCCCCTCGAGGCTCGTTT CGTTTCCTCTTGTGTAAGGGGCAGTTCAACCAAACGTCGACTACGTGTAC ACCGGGTCCTTGCAGGATTCTTGACTCGAACATCTATCTGTTCTTACGGA CCAAGTTCTGTTGTTTTGACTTTTTTTTGCTTTTGTGAAGCACCGCGGGA AGTGTGAGTAGGGGACCCCAGGGGAAGGAAACCTTCTGTGTGACCACAGG TTGGGTGGGGTCAACGGCACGATCAAGTGCTGCGAGCTCTGATTTCAAGT AAAGAACGACAAGTACAAAATCTCACCAATTTCTCAGCAGCCCATTTCTC AAGTGGCGGCGCGCTACCTGTGTGATGTACCTTCGTTGCGCGTCCAGGTG AAGGAGCTGGAGGAGTGGGGGGACTACTCGACGAATTTCTCGTTCCGGCA AGGACAAGGCCTGCCTGGCCGCGTGTACGCCAACAATAAGAGCGAATGGC AGGTGTGCATGTACACGCGTCGACGTCCGTCATGTCGTGCTGTTGGCGGC TTACGAAACCATGCAGCAGCAGCAGTAGTAGTAGTGCCTGGACGAAGATG CAGAGGCGGGTGGCGGAATTACGCAAAGCGTTGGAGGACGCGAGATGGGT CGTTCACTAACGGCGTCAGCTGCAGCGGTGCATGTCTTGTGAGGTTCGAC GTTCGGATGGTGCCGCTGGTCCCGGCGCAGATGCTGCCTTGTAACCGTGC CGTATACCAATCGACGGCGGCTTGTGTGTAAATCGGTATTGTCTTGTGTT ATGTTCGATACCGCGGTGCACGTTCAAGACTTCGCAAAATACAGCCCACT TCTTCCTGAAGTGTTTTCTTTCCCTGTTTTATTGTTATTTTTAATCCTTT CCTTCTCCGGTTCTTGTGGGCCATAAAACTGTCTTGTCTTGCAGGAGAAC GTGGTCAACCTGAATCACGCCCACTTCCTCCGCCTCAACGGGGCAATGAA CATCGGCATCCGGACGAGCTTCGGGGTCCCCGTGGTTAGTCGCTGGGGGG TCACCTTTGTCATCGTCTTCTACAGCCGTGTCGCCGTTCAGGTATGTATG TGCGTATCTATGTTGCCTCCATGCCATCTATCTATCAGAGTGACCAATGG AAATACGTCAGTCTCAGTGCGGTTGACAACGAAAAGTGCTTCTAAATTTG TGTAATTGTCTATGTTACAGGGGTCTACGTTCCTATCCGACGACGTTGGT CTCAGCAGAGCAGCTACAAAGAACTGGCGTGACCTTGAATTTTGCCTGAA TCTTCCCTCCCCCTACTGTGTGTCAGCTTTCGGCGTCCTCCGCACCAGCA TCCGTCCTGCACGTGCAAGATGCTATTATACCAGCAGTCCATGGCGTGGA TATTTCGCCACCTCACGACAAATCGTTCGATACCGCCCCCCGCCCTCCTG GTCAAAGGTCTCACGACTATGGTATGCAAAACTTGAGTACCCCCCCTCCC CCCCCCCTCCTGTCTGCGTGTACTCCTGCCTGCGAACTAACTCCACGGAT CGCAATGGTGGTGCGGTGCCACGACAGGTTGACGCGGACATGAAGGCCTT CATCGAGCGGACGGTGAGCGCCTGGAAGTTCGATGCGACGGTAGACACGG ACGTGTGTCAGGGGGATGCGGCTCCCGCAACTGCCAAGCCCCCGGGCCCC GCGGGCATCCGACCCTAGTTATTTTATTAATCGGGGGCTCCGTGGGCACC TGACCTTGATTGGGGGGACAGGAGGGCATCACCCCATGGCTGCCGAGCCC CCCGCCCGCCCGCCCGCCCCTGGGCATCCGACCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13840:661..2894+

>mRNA_Ecto-sp13_S_contig13840.3003.1 ID=mRNA_Ecto-sp13_S_contig13840.3003.1|Name=mRNA_Ecto-sp13_S_contig13840.3003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13840:661..2894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACATCGGCATCCGGACGAGCTTCGGGGTCCCCGTGGTTAGTCGCTG
GGGGGTCACCTTTGTCATCGTCTTCTACAGCCGTGTCGCCGTTCAGGTTG
ACGCGGACATGAAGGCCTTCATCGAGCGGACGGTGAGCGCCTGGAAGTTC
GATGCGACGGTAGACACGGACGTGTGTCAGGGGGATGCGGCTCCCGCAAC
TGCCAAGCCCCCGGGCCCCGCGGGCATCCGACCCTAG
back to top