mRNA_Ecto-sp13_S_contig13835.2999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13835.2999.1
Unique NamemRNA_Ecto-sp13_S_contig13835.2999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: D7FKA0_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA0_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 5.080e-75
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 1
Query:   37 QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQ   IFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK
Sbjct:  332 QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQ---IFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 451          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A6H5JYD5_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.420e-70
Identity = 117/131 (89.31%), Postives = 117/131 (89.31%), Query Frame = 1
Query:   37 QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARG--------IFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARG        IFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSAS      TNK
Sbjct:  221 QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGANQSSIEEIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASDDATAVTNK 351          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A835YQF5_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF5_9STRA)

HSP 1 Score: 234 bits (598), Expect = 5.960e-70
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 1
Query:   25 STISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            S + Q +IFVVHGGLFPHDGVT +HI+GMSRKREPPIHG +FEDQ   +FEAMLWSDPRPIQGRQ+SARGAGVEFGQD+THEFLRTNHAAL+IRSHECVREGFELLHSGRLITLFSASRYCG+QTNK
Sbjct:  326 SALIQGKIFVVHGGLFPHDGVTFDHIRGMSRKREPPIHGEAFEDQ---LFEAMLWSDPRPIQGRQLSARGAGVEFGQDVTHEFLRTNHAALVIRSHECVREGFELLHSGRLITLFSASRYCGLQTNK 449          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: W7TZP1_9STRA (Serine/threonine-protein phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZP1_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.340e-52
Identity = 84/124 (67.74%), Postives = 108/124 (87.10%), Query Frame = 1
Query:   37 QERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRP-IQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            QE+IFVVHGGLF +D V+L+H++G+SRKREPP+H + FED+   ++E MLWSDPR  + G+Q+S RGAG+EFGQD+T EFLRTN  ALI+RSHECV EG++L+H+GRL+TLFSASRYCG+QTNK
Sbjct:  351 QEKIFVVHGGLFSNDAVSLDHLRGISRKREPPVHSDVFEDR---LYEEMLWSDPRAHLAGKQISTRGAGIEFGQDVTFEFLRTNQLALIVRSHECVAEGYDLVHNGRLMTLFSASRYCGLQTNK 471          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: M4BRF7_HYAAE (Serine/threonine-protein phosphatase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRF7_HYAAE)

HSP 1 Score: 179 bits (454), Expect = 2.130e-50
Identity = 85/125 (68.00%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            + Q++IFVVHGGLF  D VTL H++G+SRKREPP+H  +FED+   IFE MLWSDPRPIQ RQ S RGAGVEFG  +T+ F   N  ALIIRSHECV +G+E+LH GRLITLFSASRYCG Q NK
Sbjct:   70 VLQQKIFVVHGGLFSRDNVTLAHLRGISRKREPPLHETNFEDK---IFEDMLWSDPRPIQSRQPSERGAGVEFGIHVTNNFCLVNKIALIIRSHECVLDGYEILHGGRLITLFSASRYCGTQMNK 191          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: H3GLM9_PHYRM (Serine/threonine-protein phosphatase n=22 Tax=Phytophthora TaxID=4783 RepID=H3GLM9_PHYRM)

HSP 1 Score: 180 bits (457), Expect = 4.260e-50
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            + Q++IFVVHGGLF  D VTL H++G++RKREPP+H  +FED+   IFE MLWSDPRPIQ RQ S RGAGVEFG ++T+ F   N  ALIIRSHECV EGFE+LH GRLITLFSASRYCG Q NK
Sbjct:  335 VLQQKIFVVHGGLFSRDNVTLAHLRGIARKREPPLHQTNFEDK---IFEDMLWSDPRPIQTRQPSERGAGVEFGVNVTNNFCLVNKIALIIRSHECVIEGFEILHGGRLITLFSASRYCGTQMNK 456          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A3F2RNE9_9STRA (Serine/threonine-protein phosphatase n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNE9_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.040e-49
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            + Q++IFVVHGGLF  D VTL H++G++RKREPP+H  +FED+   IFE MLWSDPRPIQ RQ S RGAGVEFG  +T+ F   N  ALIIRSHECV EGFE+LH GRLITLFSASRYCG Q NK
Sbjct:  313 VLQQKIFVVHGGLFSRDNVTLAHLRGITRKREPPLHQMNFEDK---IFEDMLWSDPRPIQTRQPSERGAGVEFGVSVTNNFCLVNKIALIIRSHECVVEGFEILHGGRLITLFSASRYCGTQMNK 434          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A662XRH0_9STRA (Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRH0_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.710e-49
Identity = 85/125 (68.00%), Postives = 97/125 (77.60%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            + Q +IFVVHGGLF  D VTL H++G++RKREPP+H   FED+   IFE MLWSDPR IQ RQ S RGAGVEFG ++T+ F   N  ALIIRSHECV EGFE+LH GRLITLFSASRYCG Q NK
Sbjct:  418 VLQSKIFVVHGGLFSRDNVTLAHLRGIARKREPPLHQLGFEDK---IFEDMLWSDPRAIQSRQPSERGAGVEFGVNVTNNFCLVNKIALIIRSHECVPEGFEILHGGRLITLFSASRYCGTQMNK 539          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A3R7XX99_9STRA (Serine/threonine-protein phosphatase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XX99_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.750e-49
Identity = 86/125 (68.80%), Postives = 99/125 (79.20%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            I Q++IFVVHGGLF  D VTL H++G+SRKREPP+H  +F+D+   IFE +LWSDPRPIQ RQ S RGAGVEFG  +T+ F   N  ALIIRSHECV EGFE+LH GRLITLFSASRYCG Q NK
Sbjct: 1119 IIQDKIFVVHGGLFSRDNVTLAHLRGISRKREPPLHQLNFQDK---IFEDLLWSDPRPIQSRQPSERGAGVEFGITVTNNFCFVNKIALIIRSHECVIEGFEILHGGRLITLFSASRYCGTQMNK 1240          
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Match: A0A8K1C608_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C608_PYTOL)

HSP 1 Score: 177 bits (448), Expect = 7.010e-49
Identity = 83/125 (66.40%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   31 ISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSFEDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALIIRSHECVREGFELLHSGRLITLFSASRYCGMQTNK 405
            + Q++IFVVHGGLF  D VTL H+K +SRKREPP+H   +ED+   I+E MLWSDPR IQ RQ S RGAGVEFG ++T+ F   N  AL+IRSHECV+EGFE+LH GRLITLFSASRYCG Q NK
Sbjct:  339 VIQQKIFVVHGGLFSRDNVTLAHLKAISRKREPPLHQTGYEDK---IYEDMLWSDPRSIQSRQPSERGAGVEFGVEVTNNFCLVNKIALVIRSHECVQEGFEILHGGRLITLFSASRYCGTQMNK 460          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13835.2999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKA0_ECTSI5.080e-7597.56Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5JYD5_9PHAE2.420e-7089.31Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A835YQF5_9STRA5.960e-7085.83Serine/threonine-protein phosphatase n=1 Tax=Tribo... [more]
W7TZP1_9STRA3.340e-5267.74Serine/threonine-protein phosphatase n=2 Tax=Monod... [more]
M4BRF7_HYAAE2.130e-5068.00Serine/threonine-protein phosphatase n=1 Tax=Hyalo... [more]
H3GLM9_PHYRM4.260e-5068.80Serine/threonine-protein phosphatase n=22 Tax=Phyt... [more]
A0A3F2RNE9_9STRA1.040e-4968.80Serine/threonine-protein phosphatase n=4 Tax=Phyto... [more]
A0A662XRH0_9STRA2.710e-4968.00Serine/threonine-protein phosphatase (Fragment) n=... [more]
A0A3R7XX99_9STRA4.750e-4968.80Serine/threonine-protein phosphatase n=2 Tax=Peron... [more]
A0A8K1C608_PYTOL7.010e-4966.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13835contigEcto-sp13_S_contig13835:2820..4595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score247.3
Seed ortholog evalue4.1e-63
Seed eggNOG ortholog2880.D7FKA0
Model size405
KEGG koko:K13807
KEGG Pathwayko04745,map04745
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule binding
EggNOG OGsCOG0639@1,COG5244@1,KOG0377@2759,KOG0971@2759
EC3.1.3.16
Cds size405
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462738.0378354-CDS-Ecto-sp13_S_contig13835:2819..29871681462738.0378354-CDS-Ecto-sp13_S_contig13835:2819..2987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13835 2820..2987 +
1681462738.0500047-CDS-Ecto-sp13_S_contig13835:3773..39821681462738.0500047-CDS-Ecto-sp13_S_contig13835:3773..3982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13835 3774..3982 +
1681462738.059291-CDS-Ecto-sp13_S_contig13835:4567..45951681462738.059291-CDS-Ecto-sp13_S_contig13835:4567..4595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13835 4568..4595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13835.2999.1prot_Ecto-sp13_S_contig13835.2999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13835 2820..4595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13835.2999.1

>prot_Ecto-sp13_S_contig13835.2999.1 ID=prot_Ecto-sp13_S_contig13835.2999.1|Name=mRNA_Ecto-sp13_S_contig13835.2999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MHPTDRRHSTISQERIFVVHGGLFPHDGVTLNHIKGMSRKREPPIHGNSF
EDQARGIFEAMLWSDPRPIQGRQMSARGAGVEFGQDITHEFLRTNHAALI
IRSHECVREGFELLHSGRLITLFSASRYCGMQTNK
back to top

mRNA from alignment at Ecto-sp13_S_contig13835:2820..4595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13835.2999.1 ID=mRNA_Ecto-sp13_S_contig13835.2999.1|Name=mRNA_Ecto-sp13_S_contig13835.2999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13835:2820..4595+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCCTACCGATCGCCGTCATTCTACAATTTCGCAGGAGAGAATATT CGTGGTCCACGGTGGGCTCTTCCCTCACGATGGCGTAACCTTGAACCACA TCAAAGGCATGAGCCGGAAGAGGGAGCCGCCGATTCACGGGAATTCCTTC GAGGACCAGGCGCGTGGCGTGTATCAGTAGCGAACCAGCCCTAGCGGAAG GGGTGGTGCAGTCTGGCACACGTTTTGCTAGAACCACCTGTGCGGGAACC CACCGCCGGACCCCTTTCGGTGATAATGCCCGATCGGTCCTGCTTTGTTG ACTGAACTCGATGAGGAGTAGGCTGGGTTAAAATGAGCGCGTACCGTCCC GGTTGTCTAGTGCGATAGCGCTAAAATCCAGTGAACTCGTGAGGTCTATT GCACAGGTTTTGTTGTCATGTCTTTTACTCCTGCCTCTTGAGGTCACCCG TTTAGGAGGTGAGTGTGATGGATCAATATACGTTCTGGGTCGTGCAACAG ATTGTGCCGCGGTGACGACAACCTACTGCAAGGCAGACTACGTAGCACCC TCCGTGGTCCTGCCGACTACAATAACTACAACAACACCACACTCCTTCGA AAAGGGTTTTCGAAATAATTTTCGCTCACGCCAGCGAGAACCAAAAAAAA TCTCTGTGTTTTCACTGTTTGATGCGAACGTCCTGAGACCAAACACACAG GCGACACTTTCCGTATCCCAACCGGAAAGACCTCAGCGTAAAAGAAACCG TGCGAGGCAAACCCCATATTTTCTAAGCCAACCGGCAAACCCTACCCTGT ACCTCAGCTCAACCCTACCCGGAGCTTGACCGTTCTCTGCACACGACCTG ATCCAAATCCCAATCAAACCCAATCTTCCAACACCACCCAACCGCAACCC ACACGCAACCACAATCCTAACCCCACCACCCCATGCACCCCGGACCACCG ACAGATATTCGAGGCGATGCTCTGGTCGGACCCGCGACCTATCCAGGGCC GCCAGATGTCGGCCAGAGGAGCCGGGGTCGAGTTCGGGCAGGACATTACC CACGAGTTCCTCAGGACGAACCATGCGGCCCTAATCATCCGCAGCCACGA GTGCGTGAGGGAGGGCTTTGAGCTCCTCCACAGCGGTCGCCTGATCACGC TCTTCTCGGCGAGGTGCGAGGGGAGAGTGGGGAAAATATGGCATGCGCGT GAGGCCTGGGGTTTGGGGGAGATACCCGATATCTGAAAACGTCGTCCGCG TCTCCAGACGAGGAGGCGGGGGGGATCGTATCGGCCTAGCTGAAGCACGA ATGATCCACAGCGACCGGTTGGTAGATACACGGGTGGTAAATACACATGT CCAGCAGGTTATCCGTCGACGTACTCCGTTAGGAATGTTCACCGTTCGAA ATGGCTCTTACTGCGAGATTCGAACCGTCTGAACGGAAGCTCACGAAGCA CATCTTAGCAGAAGGATCAAGATGCATTGGTCAAAGTTCAAAACGTCGTG AATGTGGGGGCAGCACAACATACAGTGACGATGCAACTGCTATGGTATGT GATGAGCGTTTCATCATGCCATTCAAAAAGGTGCAACACGAATGTCTCTC TCTGTATTTCGTTTCTTCTCTCTCTCTCTGAACTCTCACTCTCACACACC CCCTCTCTCTCTTCTTCGTCTTCGTCTTGTTCTTCTTCTCTCCCCCCTTC CGTTCTTTCGTCCATCCGTCGTCTCCGCAATGTGAATCCTAACACCAGCC GATACTGCGGCATGCAGACCAACAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13835:2820..4595+

>mRNA_Ecto-sp13_S_contig13835.2999.1 ID=mRNA_Ecto-sp13_S_contig13835.2999.1|Name=mRNA_Ecto-sp13_S_contig13835.2999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13835:2820..4595+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCCTACCGATCGCCGTCATTCTACAATTTCGCAGGAGAGAATATT
CGTGGTCCACGGTGGGCTCTTCCCTCACGATGGCGTAACCTTGAACCACA
TCAAAGGCATGAGCCGGAAGAGGGAGCCGCCGATTCACGGGAATTCCTTC
GAGGACCAGGCGCGTGGCATATTCGAGGCGATGCTCTGGTCGGACCCGCG
ACCTATCCAGGGCCGCCAGATGTCGGCCAGAGGAGCCGGGGTCGAGTTCG
GGCAGGACATTACCCACGAGTTCCTCAGGACGAACCATGCGGCCCTAATC
ATCCGCAGCCACGAGTGCGTGAGGGAGGGCTTTGAGCTCCTCCACAGCGG
TCGCCTGATCACGCTCTTCTCGGCGAGCCGATACTGCGGCATGCAGACCA
ACAAG
back to top