mRNA_Ecto-sp13_S_contig1382.2991.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 2.230e-139 Identity = 221/290 (76.21%), Postives = 235/290 (81.03%), Query Frame = 2
Query: 2 MASRQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASY---DEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANRNASADEAGATFCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAYAV 862
MASRQ DG LH ETSALHLELSAALK + D ++ H+ S + +V A+ RKEMEMLSDPKRGWQGRVGGVAPTT V G GRQKAPR+TQRSVDTA+ GGAKAGPLRAPKDHAQFQRDWRRRCR NGERRDYLRLVGPKN SALFRVEMEPDVLGQV+S VC+EFPFQP RID AT ATQENEER GAPTRGDAAGS A+TAN NASADEAGA C+EWLRALSRTGRFAVNILFL NEKQALARAFDL TAV GDE EISSLR+AYAV
Sbjct: 1 MASRQGDGTLHLETSALHLELSAALKARGCEPEEDGRDEKTSHSYGSKLRRIQAHGLVRSAKPCHGVRKEMEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRGGAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFGDE---EISSLRKAYAV 287
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI) HSP 1 Score: 370 bits (949), Expect = 2.840e-126 Identity = 191/220 (86.82%), Postives = 199/220 (90.45%), Query Frame = 2
Query: 203 MEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANRNASADEAGATFCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAYAV 862
MEMLS PKRGWQGRVGGVAPTTKV GSTGRQKAPR+TQRSVDTAI+GGAKAGPLRAPKDHAQFQRDWRRRC NGERRDYLRL+GPKNVSALFRVEMEPDVLGQVLS VCQEFP P R+DTA AT ENEER GAPTRGDA GSAA TAN +ASAD+AGA FCVEWL ALSRTGRFAVNILFL EKQ LARAFDLI+AVLGDEDDEEISSLR+AYAV
Sbjct: 1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQRSVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFPLHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLRKAYAV 220
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK) HSP 1 Score: 126 bits (317), Expect = 1.230e-31 Identity = 72/170 (42.35%), Postives = 105/170 (61.76%), Query Frame = 2
Query: 20 DGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAV 529
DG+L+ T L EL L++D + ++TD+MKKRAIH A +YDEFR+MV CA PVTRKE+E LS P +GWQ + T L T +A ++T + A L PK+ +F+RDWRR+C + ++ YLRLVGP+ ++ALF +++ +LGQ+L A+
Sbjct: 9 DGSLN--TKKLQKELIQGLEDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGWQN-----SRTQSGLPGTSSARAKKKTGQGEIKASK------KLEVPKNSVEFERDWRRKCNTDLKKIKYLRLVGPRRLAALFAGDLDAALLGQLLGAL 165
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.080e-24 Identity = 95/288 (32.99%), Postives = 141/288 (48.96%), Query Frame = 2
Query: 41 TSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANR------------NASADEAGAT----FCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAY 856
T+ + EL+ +LKED + TDE KK+ I A+YDEFRHMV+ A V+R EME L +GW+ + TK+ +TG +K+ R +R ++ P P QF+RDWRR C+ G + YLRL G + V A+F+ E++ +LG++L+A+ A + E R G T G +AA ASA EA F + LRAL +TGRF++N+ FL +K ++A + + LG ED + + R Y
Sbjct: 79 TTMIQKELADSLKEDRNYHNTDEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQK-------TKL--TTGAKKSAR-AKRQQTKGSKKLSQEFPTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAAL----------------AGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL-GELGVEDAGALEATRALY 339
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA) HSP 1 Score: 106 bits (265), Expect = 4.050e-23 Identity = 66/177 (37.29%), Postives = 100/177 (56.50%), Query Frame = 2
Query: 11 RQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
++S G+L + L ELS AL+ED TDE KKR I TAASYDEFRH+V+CA L ++R E+E LS K+GW AP ++ R++ + +V + P++ P +F+RDW+R CR++ +R YL L P ++ LF +M+ ++ +V+SA C F
Sbjct: 39 QESSGSLRQDV--LVSELSMALEEDRKHHVTDEAKKRHITTAASYDEFRHLVACADLKRLSRSEIESLSQKKKGWAR----PAPASQAGARPSRRRGNKARGAAVPIS------QFPVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSEVISA-CAHF 202
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A1V9Z8T6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8T6_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.200e-21 Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 2
Query: 35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAV 529
F+T AL EL AL+ED K TDEMKKRAIHTA SYDEFR+ V CA LNPVT KE++ LS +R P ++ R+ + ++ N PK A+F R+W+R C +N + +YL L P+ + LF+ E+E D+ ++ +
Sbjct: 9 FDTEALQKELVNALEEDRKYKATDEMKKRAIHTAGSYDEFRNFVLCADLNPVTSKELQNLSKSQR---------QPNRLYK----KKSQTRERVKLLNATDN-------FAIPKTSAEFLRNWKRNCSSNALKYEYLVLTTPERLGRLFQAEIEADLFVNIVDCM 153
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.220e-21 Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 2
Query: 35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
F+T+AL EL+ AL+ED KKTDEMKKRAIHTAASYDEFR+ V CA L PV+ K+++ LS R + R+ P + S + + + DT+ F R WRR C + ++ Y+RL P +F E+E D++ Q++ + +EF
Sbjct: 9 FDTAALQKELAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDRR-RNRMYQTKPNNPLDASRAKTLSACKKTTPPDTS----------------GDFLRTWRRSCPTHRDKYQYMRLTTPARFRKMFASELEADLMIQLIECMSEEF 160
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.660e-21 Identity = 87/267 (32.58%), Postives = 128/267 (47.94%), Query Frame = 2
Query: 104 DEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANR------------NASADEAGAT----FCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAY 856
DE KK+ I A+YDEFRHMV+ A V+R EME L +GW+ + TK+ +TG +K+ R +R ++ P P QF+RDWRR C+ G + YLRL G + V A+F+ E++ +LG++L+A+ A + E R G T G +AA ASA EA F + LRAL +TGRF++N+ FL +K ++A + + LG ED + + R Y
Sbjct: 5 DEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQK-------TKL--TTGAKKSAR-AKRQQTKGSKKLSQEFPTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAAL----------------AGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL-GELGVEDAGALEATRALY 244
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.510e-21 Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 2
Query: 35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKR----GWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
F+T+AL EL AL+ED K TD+MKKRAIHTAASYD+FR+ V CA L PV+ KE++ LS +R G+Q + T+K G+Q D A+ P +F R WRR C ++ YL++ P V+ LF+ E++ D++ Q+++ + +F
Sbjct: 9 FDTAALQKELVIALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERKRNRGYQTKSLLHVDTSKAKTLVGKQ----------DAAV----------PPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQF 161
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A485L547_9STRA (Aste57867_16283 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L547_9STRA) HSP 1 Score: 100 bits (248), Expect = 7.360e-21 Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 2
Query: 35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF-PFQPH 556
F+T+AL EL+ AL+ED K TDEMKKRAIHTA SYDEFR+ V CA L PV+ KE++ LS R G A TT G T Q D ++ P +F R W R C + YL L P + ALF E+ D+L Q+++ + +F PH
Sbjct: 10 FDTAALQQELAQALEEDRKYKLTDEMKKRAIHTAGSYDEFRNFVLCADLKPVSSKELQNLSRSARKRNRGFLGDATTTTSRGKT--------LQGKRDASV----------PPATSVEFVRTWHRSCTTQATKYAYLELTTPARLQALFSAELGTDLLFQLVACLNAQFVDLNPH 166 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1382.2991.1 >prot_Ecto-sp13_S_contig1382.2991.1 ID=prot_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp MASRQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEback to top mRNA from alignment at Ecto-sp13_S_contig1382:2378..4771- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1382.2991.1 ID=mRNA_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1382:2378..4771- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1382:2378..4771- >mRNA_Ecto-sp13_S_contig1382.2991.1 ID=mRNA_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1382:2378..4771- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |