mRNA_Ecto-sp13_S_contig1382.2991.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1382.2991.1
Unique NamemRNA_Ecto-sp13_S_contig1382.2991.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.230e-139
Identity = 221/290 (76.21%), Postives = 235/290 (81.03%), Query Frame = 2
Query:    2 MASRQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASY---DEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANRNASADEAGATFCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAYAV 862
            MASRQ DG LH ETSALHLELSAALK      + D   ++  H+  S     +   +V  A+     RKEMEMLSDPKRGWQGRVGGVAPTT V G  GRQKAPR+TQRSVDTA+ GGAKAGPLRAPKDHAQFQRDWRRRCR NGERRDYLRLVGPKN SALFRVEMEPDVLGQV+S VC+EFPFQP RID AT ATQENEER GAPTRGDAAGS A+TAN NASADEAGA  C+EWLRALSRTGRFAVNILFL  NEKQALARAFDL TAV GDE   EISSLR+AYAV
Sbjct:    1 MASRQGDGTLHLETSALHLELSAALKARGCEPEEDGRDEKTSHSYGSKLRRIQAHGLVRSAKPCHGVRKEMEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRGGAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFGDE---EISSLRKAYAV 287          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 2.840e-126
Identity = 191/220 (86.82%), Postives = 199/220 (90.45%), Query Frame = 2
Query:  203 MEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANRNASADEAGATFCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAYAV 862
            MEMLS PKRGWQGRVGGVAPTTKV GSTGRQKAPR+TQRSVDTAI+GGAKAGPLRAPKDHAQFQRDWRRRC  NGERRDYLRL+GPKNVSALFRVEMEPDVLGQVLS VCQEFP  P R+DTA  AT ENEER GAPTRGDA GSAA TAN +ASAD+AGA FCVEWL ALSRTGRFAVNILFL   EKQ LARAFDLI+AVLGDEDDEEISSLR+AYAV
Sbjct:    1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQRSVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFPLHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLRKAYAV 220          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK)

HSP 1 Score: 126 bits (317), Expect = 1.230e-31
Identity = 72/170 (42.35%), Postives = 105/170 (61.76%), Query Frame = 2
Query:   20 DGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAV 529
            DG+L+  T  L  EL   L++D + ++TD+MKKRAIH A +YDEFR+MV CA   PVTRKE+E LS P +GWQ      + T   L  T   +A ++T +    A         L  PK+  +F+RDWRR+C  + ++  YLRLVGP+ ++ALF  +++  +LGQ+L A+
Sbjct:    9 DGSLN--TKKLQKELIQGLEDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGWQN-----SRTQSGLPGTSSARAKKKTGQGEIKASK------KLEVPKNSVEFERDWRRKCNTDLKKIKYLRLVGPRRLAALFAGDLDAALLGQLLGAL 165          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.080e-24
Identity = 95/288 (32.99%), Postives = 141/288 (48.96%), Query Frame = 2
Query:   41 TSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANR------------NASADEAGAT----FCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAY 856
            T+ +  EL+ +LKED +   TDE KK+ I   A+YDEFRHMV+ A    V+R EME L    +GW+ +       TK+  +TG +K+ R  +R         ++  P   P    QF+RDWRR C+  G +  YLRL G + V A+F+ E++  +LG++L+A+                A +  E R G  T G    +AA                  ASA EA       F +  LRAL +TGRF++N+ FL   +K ++A   + +   LG ED   + + R  Y
Sbjct:   79 TTMIQKELADSLKEDRNYHNTDEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQK-------TKL--TTGAKKSAR-AKRQQTKGSKKLSQEFPTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAAL----------------AGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL-GELGVEDAGALEATRALY 339          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.050e-23
Identity = 66/177 (37.29%), Postives = 100/177 (56.50%), Query Frame = 2
Query:   11 RQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
            ++S G+L  +   L  ELS AL+ED     TDE KKR I TAASYDEFRH+V+CA L  ++R E+E LS  K+GW       AP ++      R++  +    +V  +        P++ P    +F+RDW+R CR++ +R  YL L  P ++  LF  +M+  ++ +V+SA C  F
Sbjct:   39 QESSGSLRQDV--LVSELSMALEEDRKHHVTDEAKKRHITTAASYDEFRHLVACADLKRLSRSEIESLSQKKKGWAR----PAPASQAGARPSRRRGNKARGAAVPIS------QFPVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSEVISA-CAHF 202          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A1V9Z8T6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8T6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.200e-21
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 2
Query:   35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAV 529
            F+T AL  EL  AL+ED   K TDEMKKRAIHTA SYDEFR+ V CA LNPVT KE++ LS  +R          P         ++   R+  + ++   N          PK  A+F R+W+R C +N  + +YL L  P+ +  LF+ E+E D+   ++  +
Sbjct:    9 FDTEALQKELVNALEEDRKYKATDEMKKRAIHTAGSYDEFRNFVLCADLNPVTSKELQNLSKSQR---------QPNRLYK----KKSQTRERVKLLNATDN-------FAIPKTSAEFLRNWKRNCSSNALKYEYLVLTTPERLGRLFQAEIEADLFVNIVDCM 153          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.220e-21
Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
            F+T+AL  EL+ AL+ED   KKTDEMKKRAIHTAASYDEFR+ V CA L PV+ K+++ LS   R  + R+    P   +  S  +  +  +     DT+                  F R WRR C  + ++  Y+RL  P     +F  E+E D++ Q++  + +EF
Sbjct:    9 FDTAALQKELAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDRR-RNRMYQTKPNNPLDASRAKTLSACKKTTPPDTS----------------GDFLRTWRRSCPTHRDKYQYMRLTTPARFRKMFASELEADLMIQLIECMSEEF 160          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.660e-21
Identity = 87/267 (32.58%), Postives = 128/267 (47.94%), Query Frame = 2
Query:  104 DEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEERFGAPTRGDAAGSAAMTANR------------NASADEAGAT----FCVEWLRALSRTGRFAVNILFLGYNEKQALARAFDLITAVLGDEDDEEISSLRRAY 856
            DE KK+ I   A+YDEFRHMV+ A    V+R EME L    +GW+ +       TK+  +TG +K+ R  +R         ++  P   P    QF+RDWRR C+  G +  YLRL G + V A+F+ E++  +LG++L+A+                A +  E R G  T G    +AA                  ASA EA       F +  LRAL +TGRF++N+ FL   +K ++A   + +   LG ED   + + R  Y
Sbjct:    5 DEAKKKYITKCATYDEFRHMVASADQKRVSRAEMETLGKTTKGWEQK-------TKL--TTGAKKSAR-AKRQQTKGSKKLSQEFPTTPPATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAAL----------------AGRAAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL-GELGVEDAGALEATRALY 244          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.510e-21
Identity = 64/173 (36.99%), Postives = 95/173 (54.91%), Query Frame = 2
Query:   35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKR----GWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF 541
            F+T+AL  EL  AL+ED   K TD+MKKRAIHTAASYD+FR+ V CA L PV+ KE++ LS  +R    G+Q +      T+K     G+Q          D A+           P    +F R WRR C    ++  YL++  P  V+ LF+ E++ D++ Q+++ +  +F
Sbjct:    9 FDTAALQKELVIALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERKRNRGYQTKSLLHVDTSKAKTLVGKQ----------DAAV----------PPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQF 161          
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Match: A0A485L547_9STRA (Aste57867_16283 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L547_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.360e-21
Identity = 68/175 (38.86%), Postives = 88/175 (50.29%), Query Frame = 2
Query:   35 FETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDEFRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKAPRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRLVGPKNVSALFRVEMEPDVLGQVLSAVCQEF-PFQPH 556
            F+T+AL  EL+ AL+ED   K TDEMKKRAIHTA SYDEFR+ V CA L PV+ KE++ LS   R       G A TT   G T         Q   D ++           P    +F R W R C     +  YL L  P  + ALF  E+  D+L Q+++ +  +F    PH
Sbjct:   10 FDTAALQQELAQALEEDRKYKLTDEMKKRAIHTAGSYDEFRNFVLCADLKPVSSKELQNLSRSARKRNRGFLGDATTTTSRGKT--------LQGKRDASV----------PPATSVEFVRTWHRSCTTQATKYAYLELTTPARLQALFSAELGTDLLFQLVACLNAQFVDLNPH 166          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1382.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ59_9PHAE2.230e-13976.21RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
D7G465_ECTSI2.840e-12686.82RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S4DL22_HETAK1.230e-3142.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C1V5_9STRA1.080e-2432.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2REI2_9STRA4.050e-2337.29Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9Z8T6_9STRA1.200e-2138.18Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A6G0X454_9STRA1.220e-2137.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2C2K5_9STRA1.660e-2132.58Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4H561_9STRA4.510e-2136.99Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A485L547_9STRA7.360e-2138.86Aste57867_16283 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1382contigEcto-sp13_S_contig1382:2378..4771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score113.6
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog42099.EPrPV00000014032
Model size1043
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0015630,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0046983,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
Exons3
EggNOG free text desc.PR46b. Source PGD
EggNOG OGs1MF2W@121069,2CFN8@1,2S3J2@2759
Cds size864
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462737.253095-UTR-Ecto-sp13_S_contig1382:2377..25551681462737.253095-UTR-Ecto-sp13_S_contig1382:2377..2555Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1382 2378..2555 -
1681462737.2985694-UTR-Ecto-sp13_S_contig1382:4770..47711681462737.2985694-UTR-Ecto-sp13_S_contig1382:4770..4771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1382 4771..4771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462737.270784-CDS-Ecto-sp13_S_contig1382:2555..32281681462737.270784-CDS-Ecto-sp13_S_contig1382:2555..3228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1382 2556..3228 -
1681462737.2816212-CDS-Ecto-sp13_S_contig1382:3597..37101681462737.2816212-CDS-Ecto-sp13_S_contig1382:3597..3710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1382 3598..3710 -
1681462737.2901123-CDS-Ecto-sp13_S_contig1382:4692..47701681462737.2901123-CDS-Ecto-sp13_S_contig1382:4692..4770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1382 4693..4770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1382.2991.1prot_Ecto-sp13_S_contig1382.2991.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1382 2556..4770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1382.2991.1

>prot_Ecto-sp13_S_contig1382.2991.1 ID=prot_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MASRQSDGALHFETSALHLELSAALKEDVSRKKTDEMKKRAIHTAASYDE
FRHMVSCAQLNPVTRKEMEMLSDPKRGWQGRVGGVAPTTKVLGSTGRQKA
PRQTQRSVDTAINGGAKAGPLRAPKDHAQFQRDWRRRCRNNGERRDYLRL
VGPKNVSALFRVEMEPDVLGQVLSAVCQEFPFQPHRIDTATTATQENEER
FGAPTRGDAAGSAAMTANRNASADEAGATFCVEWLRALSRTGRFAVNILF
LGYNEKQALARAFDLITAVLGDEDDEEISSLRRAYAV*
back to top

mRNA from alignment at Ecto-sp13_S_contig1382:2378..4771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1382.2991.1 ID=mRNA_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1382:2378..4771- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGCATCGAGACAGAGCGATGGAGCTCTTCATTTTGAGACTTCAGCGT TGCACCTAGAGCTGAGCGCAGCTCTCAAGGCGAGTGCGTTTCAGAACCTG CTGCGTGTATCTTTGCACACTGCCAACCTTTCGCCCCTGACAAATGCACG TGCAGAGGTGTCTCTGTCTGTGGAATCCCACACGCAAAACAAGTCGGGTG AATGTTAGCTGCTTTGCCTATCTCCAGTACGCGCCACCACCCAATGTTCC GTGTTACTACCCTACTGCAAGTACAATTTTGTTCGTGTTCTACAGCAGTG CTGCCGACGATTTTATGACGAGTACTGGTGTACATGGGGCAGTAGTACAT GGTTGTCGACGAATTCCTGTACATGCAATTACACGTACATGGCAGTGTAG AACGTGTGTGCTACATAAATGAGCGGAAGCTAGCCACTACGGTAGATCGC AGTTGCATTCTTGCTTTTTGTCGCACTTGTTTGGGTCAAATCACACCCTT CATCGTCGGTTTATCGTACAGTACGGGCACGGAGAAAAGAAACGTCAAAA TCGGATCGAGGCTCAATCCCTTATTTTGCGTCGAAACATTAGCCAAAGGC GTCCCTTTCTTATTCCTTTCGACTCTGTCGCATCCTCCTGATTCAATTAT TTCTCGTTTTTCTTTAATTTCTGGCTAAGAATATGCATATAACAACACCA AACATTCATGCAGCAATGGGCAAAGCAGCCTGCGGAGGCGCCGAGTAGCT AAAAAGCGCGGAGGCGGGGGGGGGCAGCGCCAACAATGACTCTCCCCCGC TATAAAACAAAACGTTGGCCCGCTAGGTACCGGGGGAGTGGCAGCACGAA AAGAGCAGCAGTGGAACGTTTCTCATGGAAATGCTCCCCCAGCAGCCCTT GTTTCTTATGTATTGGGGGCATCGCACGATCATGTTCTTATTGGGACGTT TCTCACGTTGTGGCCGAGATTGAGCTGTGGTTCTTTTTGTTCGTAAAAGC TTTTTTTTTTTCACGGATTTTTTCTTAATTGCGGGCCCGTACTGTATCTT CTGTTATTTAGGAGGATGTGAGCCGGAAGAAGACGGACGAGATGAAAAAA CGAGCCATTCATACTGCAGCAAGCTACGATGAATTCAGGCACATGGTCTC GTGCGCTCAGCTAAACCCTGTCACGTAAGACCTACTTGTGCTGTCGGACC CTGGACCGGCAAGGGCACACCAACCAATCTGTCAGCGTATGCGCATGGAG TGATAAGACTACATATTCAGGGTGCATGAGTAAACTTGTTAGTGCTGCAG TTCGCCACTGCCGTAGACTTCAATACCACTTCACCCACATCCCGTATGGG GAGATAATAGCCCACGAGGCTTTCTACGACGAAGCCACTCGATCGTTCCA GGGAAGGACGAAACGAACCCACAGCGAAACGCCCCCACAGCGCGTCCTGA AGGGACAGGGGTCTGTGTGGTTTGTGGGCACAACTATGTTTAGTCTATAC TTCGTATGTCAACCTGTCTTTGCCGCCACGTTGCTTGCGGCAGGCGCAAA GAGATGGAAATGCTCTCAGACCCCAAAAGGGGTTGGCAAGGGCGAGTTGG TGGTGTCGCCCCCACCACGAAGGTTTTAGGGAGCACTGGCCGACAGAAAG CGCCCAGACAAACACAACGGTCTGTCGACACTGCAATCAATGGCGGGGCG AAGGCAGGCCCTTTGCGCGCCCCGAAAGACCATGCGCAGTTCCAGCGGGA TTGGCGAAGGCGGTGCCGCAACAACGGCGAACGGCGCGACTACCTTCGCC TAGTCGGCCCCAAGAACGTATCAGCATTGTTTCGCGTTGAGATGGAACCG GACGTTCTGGGACAAGTGCTGTCGGCGGTATGTCAAGAGTTTCCCTTTCA GCCGCACCGGATCGACACTGCCACGACGGCAACGCAAGAGAACGAGGAAC GGTTTGGTGCTCCAACAAGAGGAGACGCGGCTGGTAGTGCCGCCATGACT GCAAACAGGAATGCCTCTGCAGATGAAGCTGGTGCAACGTTTTGCGTGGA GTGGCTTCGGGCACTGTCTAGGACGGGCCGGTTTGCGGTGAACATCCTGT TCTTGGGGTACAATGAAAAACAAGCGTTGGCGCGAGCGTTCGATCTGATA ACTGCCGTACTTGGTGACGAAGACGACGAGGAAATTAGCAGCCTTCGGAG GGCTTACGCAGTGTAGACACATCGTTCGTCGTCGATACCTCTACGAATGT CTCACCAAGAACTAAATGTGTGATCTTGATTTGTCGTTAAATGAAGGTTG CTCAAGGATTGTGGCATTGCACGCGGCTGAGAGTTCCGTTCCACGCCAAA TCTTGGCAACAGCCAGTTACCAACGGCAAATCTCTACGAGTTTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1382:2378..4771-

>mRNA_Ecto-sp13_S_contig1382.2991.1 ID=mRNA_Ecto-sp13_S_contig1382.2991.1|Name=mRNA_Ecto-sp13_S_contig1382.2991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1382:2378..4771- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCGAGACAGAGCGATGGAGCTCTTCATTTTGAGACTTCAGCGTT
GCACCTAGAGCTGAGCGCAGCTCTCAAGGAGGATGTGAGCCGGAAGAAGA
CGGACGAGATGAAAAAACGAGCCATTCATACTGCAGCAAGCTACGATGAA
TTCAGGCACATGGTCTCGTGCGCTCAGCTAAACCCTGTCACGCGCAAAGA
GATGGAAATGCTCTCAGACCCCAAAAGGGGTTGGCAAGGGCGAGTTGGTG
GTGTCGCCCCCACCACGAAGGTTTTAGGGAGCACTGGCCGACAGAAAGCG
CCCAGACAAACACAACGGTCTGTCGACACTGCAATCAATGGCGGGGCGAA
GGCAGGCCCTTTGCGCGCCCCGAAAGACCATGCGCAGTTCCAGCGGGATT
GGCGAAGGCGGTGCCGCAACAACGGCGAACGGCGCGACTACCTTCGCCTA
GTCGGCCCCAAGAACGTATCAGCATTGTTTCGCGTTGAGATGGAACCGGA
CGTTCTGGGACAAGTGCTGTCGGCGGTATGTCAAGAGTTTCCCTTTCAGC
CGCACCGGATCGACACTGCCACGACGGCAACGCAAGAGAACGAGGAACGG
TTTGGTGCTCCAACAAGAGGAGACGCGGCTGGTAGTGCCGCCATGACTGC
AAACAGGAATGCCTCTGCAGATGAAGCTGGTGCAACGTTTTGCGTGGAGT
GGCTTCGGGCACTGTCTAGGACGGGCCGGTTTGCGGTGAACATCCTGTTC
TTGGGGTACAATGAAAAACAAGCGTTGGCGCGAGCGTTCGATCTGATAAC
TGCCGTACTTGGTGACGAAGACGACGAGGAAATTAGCAGCCTTCGGAGGG
CTTACGCAGTGTAG
back to top