mRNA_Ecto-sp13_S_contig13807.2982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13807.2982.1
Unique NamemRNA_Ecto-sp13_S_contig13807.2982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Match: A0A6H5KCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF3_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.100e-57
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR 285
            MYFVYGCPKVLSLRPEPK GEQILEVAFNPSGSL AVASTSRLCLWSGGKDHVPLG+LTLPLRGLA TSLLWKRDSSLLGMVSSAGKLVLVSVKR
Sbjct:    1 MYFVYGCPKVLSLRPEPKRGEQILEVAFNPSGSLFAVASTSRLCLWSGGKDHVPLGILTLPLRGLAATSLLWKRDSSLLGMVSSAGKLVLVSVKR 95
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BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.370e-52
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:    1 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR 285
            MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLG LTLPLRGLAGTSLLWKRDSSLLG+VSSAGKLVLVSVKR
Sbjct:   49 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGTLTLPLRGLAGTSLLWKRDSSLLGIVSSAGKLVLVSVKR 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCF3_9PHAE2.100e-5795.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI1.370e-5297.89SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13807contigEcto-sp13_S_contig13807:1342..1626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score187.6
Seed ortholog evalue2.7e-45
Seed eggNOG ortholog2880.D8LB77
Model size285
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
Cds size285
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.7123094-CDS-Ecto-sp13_S_contig13807:1341..16261681462736.7123094-CDS-Ecto-sp13_S_contig13807:1341..1626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13807 1342..1626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13807.2982.1prot_Ecto-sp13_S_contig13807.2982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13807 1342..1626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13807.2982.1

>prot_Ecto-sp13_S_contig13807.2982.1 ID=prot_Ecto-sp13_S_contig13807.2982.1|Name=mRNA_Ecto-sp13_S_contig13807.2982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGK
DHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR
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mRNA from alignment at Ecto-sp13_S_contig13807:1342..1626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13807.2982.1 ID=mRNA_Ecto-sp13_S_contig13807.2982.1|Name=mRNA_Ecto-sp13_S_contig13807.2982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13807:1342..1626- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTTGTGTATGGTTGCCCGAAAGTGCTATCCTTGCGCCCGGAGCC
CAAGCCCGGAGAGCAAATCCTCGAGGTCGCGTTCAACCCGTCCGGGTCCC
TGCTTGCCGTAGCGTCCACTTCGCGATTGTGCCTCTGGTCGGGCGGCAAG
GACCATGTCCCTCTAGGCCTCCTGACGCTCCCGCTACGTGGCTTAGCAGG
CACGAGCCTGCTGTGGAAGAGAGACTCGAGTTTGCTCGGAATGGTGTCGT
CTGCTGGAAAGCTGGTGCTGGTTTCGGTCAAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13807:1342..1626-

>mRNA_Ecto-sp13_S_contig13807.2982.1 ID=mRNA_Ecto-sp13_S_contig13807.2982.1|Name=mRNA_Ecto-sp13_S_contig13807.2982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13807:1342..1626- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTTGTGTATGGTTGCCCGAAAGTGCTATCCTTGCGCCCGGAGCC
CAAGCCCGGAGAGCAAATCCTCGAGGTCGCGTTCAACCCGTCCGGGTCCC
TGCTTGCCGTAGCGTCCACTTCGCGATTGTGCCTCTGGTCGGGCGGCAAG
GACCATGTCCCTCTAGGCCTCCTGACGCTCCCGCTACGTGGCTTAGCAGG
CACGAGCCTGCTGTGGAAGAGAGACTCGAGTTTGCTCGGAATGGTGTCGT
CTGCTGGAAAGCTGGTGCTGGTTTCGGTCAAGCGG
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