prot_Ecto-sp13_S_contig13807.2982.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13807.2982.1
Unique Nameprot_Ecto-sp13_S_contig13807.2982.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length95
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Match: A0A6H5KCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF3_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 2.100e-57
Identity = 91/95 (95.79%), Postives = 92/95 (96.84%), Query Frame = 0 
Query:    1 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR 95
            MYFVYGCPKVLSLRPEPK GEQILEVAFNPSGSL AVASTSRLCLWSGGKDHVPLG+LTLPLRGLA TSLLWKRDSSLLGMVSSAGKLVLVSVKR
Sbjct:    1 MYFVYGCPKVLSLRPEPKRGEQILEVAFNPSGSLFAVASTSRLCLWSGGKDHVPLGILTLPLRGLAATSLLWKRDSSLLGMVSSAGKLVLVSVKR 95
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BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.370e-52
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0 
Query:    1 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR 95
            MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLG LTLPLRGLAGTSLLWKRDSSLLG+VSSAGKLVLVSVKR
Sbjct:   49 MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGKDHVPLGTLTLPLRGLAGTSLLWKRDSSLLGIVSSAGKLVLVSVKR 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13807.2982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCF3_9PHAE2.100e-5795.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI1.370e-5297.89SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 19..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13807contigEcto-sp13_S_contig13807:1342..1626 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13807.2982.1mRNA_Ecto-sp13_S_contig13807.2982.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13807 1342..1626 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13807.2982.1 ID=prot_Ecto-sp13_S_contig13807.2982.1|Name=mRNA_Ecto-sp13_S_contig13807.2982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MYFVYGCPKVLSLRPEPKPGEQILEVAFNPSGSLLAVASTSRLCLWSGGK
DHVPLGLLTLPLRGLAGTSLLWKRDSSLLGMVSSAGKLVLVSVKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf