mRNA_Ecto-sp13_S_contig13795.2979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13795.2979.1
Unique NamemRNA_Ecto-sp13_S_contig13795.2979.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 8.270e-63
Identity = 118/167 (70.66%), Postives = 118/167 (70.66%), Query Frame = 3 
Query:    3 DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:   89 DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.220e-60
Identity = 111/167 (66.47%), Postives = 117/167 (70.06%), Query Frame = 3 
Query:    3 DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            DYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:   28 DYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 199 bits (505), Expect = 2.710e-59
Identity = 110/166 (66.27%), Postives = 115/166 (69.28%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   52 YNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 192 bits (488), Expect = 4.530e-57
Identity = 109/166 (65.66%), Postives = 113/166 (68.07%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   29 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 4.750e-56
Identity = 105/166 (63.25%), Postives = 113/166 (68.07%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALYK+KKEKPRS
Sbjct:   27 YCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 189 bits (480), Expect = 6.710e-56
Identity = 104/166 (62.65%), Postives = 113/166 (68.07%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:   27 YTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.430e-55
Identity = 104/166 (62.65%), Postives = 113/166 (68.07%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DEN                                                 DEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   29 WNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEN-------------------------------------------------DEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 187 bits (474), Expect = 5.310e-55
Identity = 103/166 (62.05%), Postives = 114/166 (68.67%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            Y K +S+TAM+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct:   27 YCKKNSITAMRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO)

HSP 1 Score: 186 bits (473), Expect = 7.990e-55
Identity = 104/166 (62.65%), Postives = 111/166 (66.87%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DEN                                                 DEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct:   29 YNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDEN-------------------------------------------------DEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.130e-54
Identity = 104/166 (62.65%), Postives = 110/166 (66.27%), Query Frame = 3 
Query:    6 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 503
            YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DEN                                                 DEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct:   29 YNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDEN-------------------------------------------------DEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI8.270e-6370.66Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA3.220e-6066.47Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
A0A4W5LQ08_9TELE2.710e-5966.2740S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
M4BPE8_HYAAE4.530e-5765.66Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A7R9WFA5_9STRA4.750e-5663.25Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
B8C1Z7_THAPS6.710e-5662.65RS23, ribosomal protein 23 40S small ribosomal sub... [more]
W7TKK2_9STRA1.430e-5562.6540s ribosomal protein s23 n=2 Tax=Monodopsidaceae ... [more]
A0A6U0RBQ4_9STRA5.310e-5562.05Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A5A8EIQ0_CAFRO7.990e-5562.65Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A8E8PJI4_9STRA1.130e-5462.6540S ribosomal protein S23 n=2 Tax=Placidida sp. Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13795contigEcto-sp13_S_contig13795:2037..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score194.1
Seed ortholog evalue4.9e-47
Seed eggNOG ortholog2880.D7FUM9
Preferred nameRPS23
Model size1165
KEGG koko:K02973,ko:K03124
KEGG Pathwayko03010,ko03022,ko05169,ko05203,map03010,map03022,map05169,map05203
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001666,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006606,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017038,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030490,GO:0030867,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034063,GO:0034248,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0036293,GO:0036294,GO:0042175,GO:0042221,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990145,GO:1990904,GO:2000112,GO:2000638,GO:2000640,GO:2001141
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1749@2759
Cds size474
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.5450635-UTR-Ecto-sp13_S_contig13795:2036..20681681462736.5450635-UTR-Ecto-sp13_S_contig13795:2036..2068Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13795 2037..2068 +
1681462736.5797696-UTR-Ecto-sp13_S_contig13795:3189..38481681462736.5797696-UTR-Ecto-sp13_S_contig13795:3189..3848Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13795 3190..3848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.5553715-CDS-Ecto-sp13_S_contig13795:2068..21271681462736.5553715-CDS-Ecto-sp13_S_contig13795:2068..2127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13795 2069..2127 +
1681462736.5636015-CDS-Ecto-sp13_S_contig13795:2648..29221681462736.5636015-CDS-Ecto-sp13_S_contig13795:2648..2922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13795 2649..2922 +
1681462736.5717149-CDS-Ecto-sp13_S_contig13795:3048..31891681462736.5717149-CDS-Ecto-sp13_S_contig13795:3048..3189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13795 3049..3189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13795.2979.1prot_Ecto-sp13_S_contig13795.2979.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13795 2069..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13795.2979.1

>prot_Ecto-sp13_S_contig13795.2979.1 ID=prot_Ecto-sp13_S_contig13795.2979.1|Name=mRNA_Ecto-sp13_S_contig13795.2979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFV
PRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNIL
RENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKD
KKEKPRS*
back to top

mRNA from alignment at Ecto-sp13_S_contig13795:2037..3848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13795.2979.1 ID=mRNA_Ecto-sp13_S_contig13795.2979.1|Name=mRNA_Ecto-sp13_S_contig13795.2979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1812bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13795:2037..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACTACAACAAGTCTCACTCGGTAACCGCGATGAAGGCCAACCCCCTC
GGTGGCTCTTCCATGGCCAAGGGCATCGTGTTGGAGAAGATGTGAGTTTG
TTCTGGAGCCTCTCGCTACCCCTCCTTCCCCCGCACGCTCCGTCATGGTA
CATACACGCACACCAAAGACTGCCGAAGATGGCTATTCAGACGAGTCTTT
GGTTGTGGGGTATGGCGGCATACAGGTGGCTCCTTGATGCTTTACGTCTG
AGCAGTTCACGCTCTTCGTGGTGATGGTCATGATTCCGAGTAGGTACACG
CATAGGGCGCGCAACAAAGCGGTACCACCCCTACGTTGCTAAACACATGC
CTAAATCCGATACTACCCCGTCGAATAGACCGGCCAGGTTCGTGTGCTGG
TTCAGTCTCCTTTCAGCTGTCCTGCCTGCCCTCTGTGCTTCCTACTGCCG
TCCTTCTCGAAGCACTCGCAACGCCTTTTTATGTTCACCCCTTTTTGCCT
GTCTAGTCTCTGTCGGGTACACCCCCACTTCGGTGCTGGAATCCAATTAT
TTCATTTTTCAAAATCTTTTGCGAAAACATTGCACTCTGTTTTTCCCATC
ATGAATTTGCAGCGGTATCGAGGCCAAGCAGCCTAACTCTGCCATCCGGA
AGTGCGTGCGCGTACAGCTCATCAAGAACGGAAAGAAGCTGGCGGCCTTC
GTGCCGCGCGACGGTTGCCTCAACTTCACGGACGAGAACGTGAGTCCTTT
TTTTTTCTGTTGTTTTAGTGCCGATGACGTGAACTCAACGGGTGAACTTA
AATTTGTCTGTCTGTTCATATGGGTATGGTCCTGCAATTTACTCAACATT
TTACGAGAAAACAGCGAGTTTCGCCCTATCACTTTTGTCCAGTCACTTGC
AAGGTGAACTTTTTCTTGTCTGTGGGTATTGTCATTGTCGTCCCGCACCG
AGATCACCACTGGATGCGTAGAGATACTATAACCCATCTGACACCTTTCT
TTGTTTTTGCAGGACGAGGTGCTCATCTCCGGATTCGGTCGCCGCGGTCA
CGCCGTGGGTGACATCCCCGGTGTCCGGTTCAAGGTGGTCAAGGTGGCCG
GTGTCGCGCTGCTGGCCCTCTACAAGGACAAGAAGGAGAAGCCGCGGTCC
TAAGAACGTTCTCTCGAGAACGGACCTAGGTCGCGCTCTCTCTCTTCTCT
AAAGCTCGTTACAGCGCCTCGGAGGGAGGGGGTAACGCGGATTCATGAGT
GCGAGCATGTCGCCATGTAGGTCCAATTTTTTCGTGGCGATACGGAGGAT
TTTTGGTCTGGGAGAGGTAGCTCTTGTGATGGGAGAGCTTGTTCGTTCCC
ATCTGCTGTGTCCCGCGCTCTTGAAATGAAATATGCTGCTGCTGCTTTTG
CTCCGAGGGGCGTTGCCCCACTGGATGGGAAAAATCCCGGAAATGTCTTC
ATTACTGCTGCGAAGATGAAGATATGTTTCCCGTCTTTCTTTTTTGGTCG
TGCGTGGGTGTCGCCGCTTGGTGAAAGCCCAACACACGCGTACCGCCGAC
AGACAACGATGACATGGCATGCCAAAGTGCATGGGCCGCATTGCTGTCGT
CAATCGTGGCGATCCCTTGACGGAGCTACAGCCAGCCGTGACTAGCCAAG
TCAGGGTCAAGCTATCTCGTTACACAGCTCGCTTGCTCGTCGCACTTGTA
CCAAACCAATGAGGCAGCTTGTCTTGGCCTCTGCTCACATGCAAGCTCAC
GCTCTCAGATGTACAGTTCGTTTCCTTGCTGCTTGGGAAGGTCTCGTGCG
GTTGGAATCCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13795:2037..3848+

>mRNA_Ecto-sp13_S_contig13795.2979.1 ID=mRNA_Ecto-sp13_S_contig13795.2979.1|Name=mRNA_Ecto-sp13_S_contig13795.2979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13795:2037..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCCAACCCCCTCGGTGGCTCTTCCATGGCCAAGGGCATCGTGTT
GGAGAAGATCGGTATCGAGGCCAAGCAGCCTAACTCTGCCATCCGGAAGT
GCGTGCGCGTACAGCTCATCAAGAACGGAAAGAAGCTGGCGGCCTTCGTG
CCGCGCGACGGTTGCCTCAACTTCACGGACGAGAACGTGAGTCCTTTTTT
TTTCTGTTGTTTTAGTGCCGATGACGTGAACTCAACGGGTGAACTTAAAT
TTGTCTGTCTGTTCATATGGGTATGGTCCTGCAATTTACTCAACATTTTA
CGAGAAAACAGCGAGTTTCGCCCTATCACTTTTGACGAGGTGCTCATCTC
CGGATTCGGTCGCCGCGGTCACGCCGTGGGTGACATCCCCGGTGTCCGGT
TCAAGGTGGTCAAGGTGGCCGGTGTCGCGCTGCTGGCCCTCTACAAGGAC
AAGAAGGAGAAGCCGCGGTCCTAA
back to top