prot_Ecto-sp13_S_contig13795.2979.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13795.2979.1
Unique Nameprot_Ecto-sp13_S_contig13795.2979.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length158
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 6.610e-59
Identity = 108/157 (68.79%), Postives = 108/157 (68.79%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct:   99 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.040e-56
Identity = 102/157 (64.97%), Postives = 107/157 (68.15%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct:   38 MKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE)

HSP 1 Score: 183 bits (464), Expect = 2.160e-56
Identity = 102/157 (64.97%), Postives = 106/157 (67.52%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct:   61 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.580e-55
Identity = 98/157 (62.42%), Postives = 107/157 (68.15%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            M+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct:   36 MRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.500e-55
Identity = 99/157 (63.06%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALYK+KKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.400e-54
Identity = 98/157 (62.42%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DEN                                                 DEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct:   38 MKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDEN-------------------------------------------------DEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A5D6XQ53_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ53_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.480e-54
Identity = 99/157 (63.06%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK VRVQLIKN KK+AAFVPRDGCLN+ DEN                                                 DEVLI+GFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSVRVQLIKNSKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLIAGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS)

HSP 1 Score: 176 bits (447), Expect = 3.740e-54
Identity = 97/157 (61.78%), Postives = 105/157 (66.88%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DEN                                                 DEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct:   36 MKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: A0A0W8DH21_PHYNI (Actin-depolymerizing factor 10 n=5 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DH21_PHYNI)

HSP 1 Score: 175 bits (443), Expect = 5.000e-54
Identity = 99/157 (63.06%), Postives = 104/157 (66.24%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLN+ DEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNYVDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 108
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BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE)

HSP 1 Score: 176 bits (446), Expect = 5.660e-54
Identity = 100/157 (63.69%), Postives = 104/157 (66.24%), Query Frame = 0 
Query:    1 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNILRENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 157
            MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK  RVQLIKN KK+AAFVPRDGCLNF DEN                                                 DEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct:   38 MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDEN-------------------------------------------------DEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13795.2979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUM9_ECTSI6.610e-5968.79Ribosomal protein S23, component of cytosolic 80S ... [more]
A0A835Z8V8_9STRA1.040e-5664.97Putative ribosomal protein S23 n=1 Tax=Tribonema m... [more]
A0A4W5LQ08_9TELE2.160e-5664.9740S ribosomal protein S23 n=31 Tax=Eukaryota TaxID... [more]
A0A6U0RBQ4_9STRA4.580e-5562.42Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A7R9WFA5_9STRA6.500e-5563.06Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
W7TKK2_9STRA1.400e-5462.4240s ribosomal protein s23 n=2 Tax=Monodopsidaceae ... [more]
A0A5D6XQ53_9STRA2.480e-5463.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
B8C1Z7_THAPS3.740e-5461.78RS23, ribosomal protein 23 40S small ribosomal sub... [more]
A0A0W8DH21_PHYNI5.000e-5463.06Actin-depolymerizing factor 10 n=5 Tax=Peronospora... [more]
M4BPE8_HYAAE5.660e-5463.69Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..64
e-value: 8.6E-19
score: 69.4
NoneNo IPR availableGENE3D2.40.50.140coord: 83..157
e-value: 9.7E-20
score: 72.2
NoneNo IPR availablePANTHERPTHR11652:SF4040S RIBOSOMAL PROTEIN S23-1-RELATEDcoord: 4..64
coord: 112..157
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 112..156
e-value: 2.0E-14
score: 53.2
coord: 2..62
e-value: 4.8E-26
score: 90.6
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 107..157
e-value: 6.2E-6
score: 23.6
coord: 1..64
e-value: 6.0E-17
score: 59.2
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..64
coord: 112..157
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 25..32
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..62
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 111..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13795contigEcto-sp13_S_contig13795:2069..3189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13795.2979.1mRNA_Ecto-sp13_S_contig13795.2979.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13795 2037..3848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13795.2979.1 ID=prot_Ecto-sp13_S_contig13795.2979.1|Name=mRNA_Ecto-sp13_S_contig13795.2979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFV
PRDGCLNFTDENVSPFFFCCFSADDVNSTGELKFVCLFIWVWSCNLLNIL
RENSEFRPITFDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKD
KKEKPRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold