mRNA_Ecto-sp13_S_contig13794.2978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: D8LEL5_ECTSI (UDP-glucose 4-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL5_ECTSI) HSP 1 Score: 501 bits (1289), Expect = 1.320e-178 Identity = 238/251 (94.82%), Postives = 242/251 (96.41%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
IGSHTVVLLLEAGYNVVVADNLCNS + +SLRRVRVLTGCAPER+VFHNVDLCD AALGKVLEACP FHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVG PRVGDLACVYADPA+AAEDLGWKAQFGLD
Sbjct: 18 IGSHTVVLLLEAGYNVVVADNLCNSSE-----ESLRRVRVLTGCAPERLVFHNVDLCDAAALGKVLEACPQFHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGPPRVGDLACVYADPAKAAEDLGWKAQFGLD 263
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A835YY50_9STRA (UDP-glucose 4-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY50_9STRA) HSP 1 Score: 295 bits (756), Expect = 2.860e-96 Identity = 157/332 (47.29%), Postives = 199/332 (59.94%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSD--------KGKD----WAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
IGSHT ++LLEAG++VVV D+ NS +SL RV +T C PER+ +H +DLCD AAL ++L PPF SCIHFAGLK + IEEIL+DF SD +G + W I+ LRYFNPTGAH SGDIGEDP G PNNL PY++QVAVG+RE LT+FG YDT DGTGVRDY+HV+DLA GHLKAL++L+K CG++THNLG+G+GYSVL+MV+AM+KASG+ +P+ +G R GDLA VYADP+ A ++LGW+ G+D
Sbjct: 23 IGSHTALVLLEAGFDVVVLDSFVNSSP-----ESLERVLKITNCGPERLKWHKLDLCDQAALHEILLQYPPFDSCIHFAGLKAVNESLHEPLLYYHNNIVSTLNLLKELDERTCRKLVFSSSATVYGNAPAPITEESHVGQGITNPYGRTKYFIEEILRDFTISDDHHATNAKEGHELSSRWKIESLRYFNPTGAHPSGDIGEDPRGPPNNLAPYLSQVAVGRREQLTIFGGDYDTVDGTGVRDYVHVLDLAEGHLKALEYLDKVPCGFHTHNLGSGSGYSVLQMVKAMEKASGRPVPHVIGPRRQGDLASVYADPSLAKKELGWECTRGID 349
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A6H5JNE0_9PHAE (Epimerase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE0_9PHAE) HSP 1 Score: 282 bits (722), Expect = 1.670e-94 Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1
Query: 250 MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDI 648
MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSG+IGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKD+
Sbjct: 1 MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGEIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDV 133
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A448YZL8_9STRA (UDP-glucose 4-epimerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZL8_9STRA) HSP 1 Score: 283 bits (725), Expect = 1.090e-91 Identity = 159/332 (47.89%), Postives = 186/332 (56.02%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTG----CAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK----------------------------------------------------------------------FMIEEILKDFVKS----DKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHT+ LLE GY VVV DNL NS A SL RV LTG ER+VFH VDLCD AL +V E P F +CIHFAGLK +M+EEIL+DF KS D DW++ LRYFNP GAH SG IGEDPNGIPNNLMPYVAQVA G+RE LTVFGD Y T DGTGVRDY+HV+DLA GH+ A++++EKK G +T NLGTG G SV++MV AM KA G +I YKVG R GD+A YAD + A +LGW+A+ L+ C
Sbjct: 21 IGSHTIFCLLEQGYGVVVLDNLSNSSVA-----SLDRVAELTGLDEAARRERLVFHQVDLCDRDALKRVFETSPRFAACIHFAGLKAVGESTRIPLKYYHNNITGTLFLLELLDEFGCHSIVFSSSATVYGAADKMPITEETPVGTGITNAYGRTKYMLEEILRDFYKSKTLGDAETDWSVALLRYFNPIGAHPSGKIGEDPNGIPNNLMPYVAQVATGRREFLTVFGDDYPTPDGTGVRDYLHVMDLAEGHISAIEYMEKKKSGTFTFNLGTGNGCSVIDMVRAMSKACGHEIKYKVGPRRPGDIATCYADASLAKNELGWEAKLTLEDMC 347
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A1E7F5A5_9STRA (UDP-glucose 4-epimerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5A5_9STRA) HSP 1 Score: 275 bits (703), Expect = 2.690e-88 Identity = 158/333 (47.45%), Postives = 182/333 (54.65%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTG----CAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK----------------------------------------------------------------------FMIEEILKDFVKS----DKGK-DWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHT+V LLE GYNVVV DNL NS A +L RV L ER+VFHNVD+CD AL KV E P FH+CIHFAGLK +MIEEIL+DF S + G DW++ LRYFNP GAH SG IGEDP+GIPNNLMPYVAQVA G+RE LTVFGD Y T DGTGVRDY+HV+DLA GH+ A+++ KK G YT NLGTG G SV +M +AM KA G +I KVG R GD+A YAD A LGW+A+ LD C
Sbjct: 23 IGSHTIVCLLEQGYNVVVVDNLINSSLA-----ALDRVAELVNLDDAARKERLVFHNVDICDRNALKKVFETSPTFHACIHFAGLKAVGESTKIPLKYYHNNLTGTFFLLELMDEFGCHSIVFSSSATVYGAADKMPITEETTVGTGITNAYGRTKYMIEEILRDFYNSKTLGESGTTDWSVVILRYFNPIGAHPSGKIGEDPDGIPNNLMPYVAQVAAGRREFLTVFGDDYPTPDGTGVRDYLHVMDLAEGHIAAIEYAGKKEAGTYTFNLGTGNGCSVFDMTKAMGKACGHEIKCKVGARRPGDIATCYADATLAKTKLGWEAKLTLDEMC 350
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A7S1XTS9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTS9_9STRA) HSP 1 Score: 274 bits (700), Expect = 7.520e-87 Identity = 152/323 (47.06%), Postives = 186/323 (57.59%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHT ++LLEAGY V V DNLCNS +SL RV LTG + + F VD+ D ++ +L+ P SCIHFAGLK +MIEEIL+D S GK+W+I LRYFNP GAH SG IGEDPNG PNNLMPYV+QVAVG+RE L+V+G+ YDT DGTGVRDYIHV+DLA GHLKAL++++++G G Y NLGTG G SVLEMV AM+KASG++IPY + D R GDLA VYA +A ++LGW A L+ C
Sbjct: 105 IGSHTCLVLLEAGYEVTVVDNLCNSSP-----ESLTRVADLTGKG-DCLHFFEVDIRDKDSVQDLLKKIPKVDSCIHFAGLKAVGESTKLPLLYYENNVQATVTLLQVLQEAGVKGFVFSSSATVYGDAPVPITEESPVGNGITNAYGRSKYMIEEILRDLSNSPDGKEWSISILRYFNPVGAHPSGRIGEDPNGPPNNLMPYVSQVAVGRREKLSVYGNDYDTPDGTGVRDYIHVMDLADGHLKALEYMDREGAGNYVFNLGTGKGNSVLEMVAAMRKASGREIPYVITDRRPGDLATVYAATDKARDELGWTATRSLEDMC 421
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: I2CQM0_NANGC (UDP-glucose 4-epimerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM0_NANGC) HSP 1 Score: 269 bits (687), Expect = 1.180e-85 Identity = 151/322 (46.89%), Postives = 184/322 (57.14%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGC--GWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
IGSHTV+LL+EAGY VVV D+L NS + ++LRRV LTG PE+++F DL D AL V F +C+HFAGLK + IE+ L+DF +S GK W + LRYFNP GAH SG IGEDP+G PNNLMPYV+QVAVG+R LTVFG Y T+DGTGVRDYIHV+DLA GHL ALD+ + +G G + NLGTG GYSVLEMV AM+KASG+ I Y +G+ R GDL VY+DP++A +LGWKA GLD
Sbjct: 50 IGSHTVLLLVEAGYEVVVVDSLVNSCE-----EALRRVGALTG-HPEKIIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIMVFSSSATVYGSAQSPVTEDQPVGQGITNPYGQTKYFIEKFLEDFQRSPDGKSWKVVILRYFNPVGAHESGRIGEDPSGTPNNLMPYVSQVAVGRRPQLTVFGGNYQTRDGTGVRDYIHVMDLAEGHLAALDYAKARGHHGGCFVFNLGTGKGYSVLEMVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLD 365
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: M1VE42_CYAM1 (UDP-glucose 4-epimerase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VE42_CYAM1) HSP 1 Score: 265 bits (678), Expect = 1.150e-84 Identity = 154/325 (47.38%), Postives = 183/325 (56.31%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKG-KDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKK--GCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHTVV LLE+GY+VVV DNL NS + ++LRRVR LTG + +R+ F VDL D AL + P +CIHFAGLK IEE L+D S G +DW I LRYFNP GAH+SG IGEDP GIPNNLMP++AQVAVG+RE L+V+G+ Y T DGTGVRDYIHVVDLA GH+ AL+ LEK G NLGTG GYSVLEMV+A +KASG+ IPYK+ R GD A VYADP+ A LGW+A+ G+D C
Sbjct: 16 IGSHTVVELLESGYDVVVLDNLSNSSE-----EALRRVRELTGASEQRLQFQAVDLTDGVALDAAVAKSAPISACIHFAGLKAVGESVEQPLRYYRNNLIGTLNLLQSLNRHGCRRFVFSSSATVYGQAEKVPISETSPLGATNPYGKTKLFIEEFLRDLHASPHGGRDWHILILRYFNPVGAHASGRIGEDPVGIPNNLMPFIAQVAVGRREFLSVYGNDYPTPDGTGVRDYIHVVDLAKGHVAALEKLEKDEANVGCVAVNLGTGRGYSVLEMVKAFEKASGRRIPYKIVARRPGDAAVVYADPSFAKTFLGWEAKLGIDEMC 335
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A3A4SA16_9DELT (UDP-glucose 4-epimerase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4SA16_9DELT) HSP 1 Score: 263 bits (673), Expect = 4.000e-84 Identity = 154/322 (47.83%), Postives = 182/322 (56.52%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHT + LLEAGY V+VADNL NS +SLRRV+ LTG ++++FH VDL D + L + ++ S IHFAGLK MIEEILKD SD W I LRYFNP GAH SG IGEDPNGIPNNL+PYV+QVAVGK E L+V+G+ Y TKDGTGVRDYIHVVDLA GH+KAL LE T+NLGTG GYSVLEMV+A +KASGK +PY++ R GD+A YADP A ++LGW AQ GL+ C
Sbjct: 12 IGSHTCLELLEAGYEVIVADNLVNSNP-----ESLRRVQELTG---KKIIFHKVDLRDKSGLDAIFQSAS-IQSVIHFAGLKAVGESVSIPLAYYHNNITGTLILCDVMKEHNVRNFVFSSSATVYGDPHTVPIKEDFPVSVTNPYGRTKLMIEEILKDLHGSDP--TWNIALLRYFNPVGAHPSGRIGEDPNGIPNNLLPYVSQVAVGKLEKLSVYGNDYPTKDGTGVRDYIHVVDLAKGHIKALAKLESGNGQLLTYNLGTGQGYSVLEMVKAFEKASGKKVPYQIVGRRTGDIATCYADPTLAKKELGWTAQQGLEEMC 322
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A1V5GY22_9DELT (UDP-glucose 4-epimerase n=1 Tax=Deltaproteobacteria bacterium ADurb.BinA179 TaxID=1852872 RepID=A0A1V5GY22_9DELT) HSP 1 Score: 263 bits (672), Expect = 5.160e-84 Identity = 154/323 (47.68%), Postives = 184/323 (56.97%), Query Frame = 1
Query: 1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGC-GWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
IGSHT V LLEAGY V+VADNL NS++ +SLRRV +TG +R+ FH VDL D AL + A + IHFAGLK MIE IL+D SD G W I LRYFNP GAH+SG IGEDPNG PNNLMP+++QVAVGK L+VFG+ Y T+DGTGVRDYIHVVDLA GH+ AL LE+ C G T+NLGTG GYSVLEMV A +KASG+ IPY++ + R GD+A YADP++A +LGWKAQ G+D C
Sbjct: 12 IGSHTCVELLEAGYEVIVADNLSNSKE-----ESLRRVEAITG---KRLTFHKVDLLDREALSSIF-ARSEIRAVIHFAGLKAVGESVSVPLRYYHNNVTGTLILCSVMMEHGVRNMVFSSSATVYGDPERVPIREDFPLGATNPYGRSKLMIEVILRDLHASDAG--WNIALLRYFNPVGAHASGLIGEDPNGTPNNLMPFISQVAVGKLPMLSVFGNDYPTRDGTGVRDYIHVVDLAQGHIHALKKLEQ--CPGIVTYNLGTGQGYSVLEMVRAFEKASGRKIPYRIAERRPGDIASCYADPSKAESELGWKAQRGIDDMC 321 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13794.2978.1 >prot_Ecto-sp13_S_contig13794.2978.1 ID=prot_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVback to top mRNA from alignment at Ecto-sp13_S_contig13794:186..4597- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13794.2978.1 ID=mRNA_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13794:186..4597- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13794:186..4597- >mRNA_Ecto-sp13_S_contig13794.2978.1 ID=mRNA_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13794:186..4597- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |