mRNA_Ecto-sp13_S_contig13794.2978.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13794.2978.1
Unique NamemRNA_Ecto-sp13_S_contig13794.2978.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: D8LEL5_ECTSI (UDP-glucose 4-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL5_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 1.320e-178
Identity = 238/251 (94.82%), Postives = 242/251 (96.41%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
            IGSHTVVLLLEAGYNVVVADNLCNS +     +SLRRVRVLTGCAPER+VFHNVDLCD AALGKVLEACP FHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVG PRVGDLACVYADPA+AAEDLGWKAQFGLD
Sbjct:   18 IGSHTVVLLLEAGYNVVVADNLCNSSE-----ESLRRVRVLTGCAPERLVFHNVDLCDAAALGKVLEACPQFHSCIHFAGLKFMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGPPRVGDLACVYADPAKAAEDLGWKAQFGLD 263          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A835YY50_9STRA (UDP-glucose 4-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY50_9STRA)

HSP 1 Score: 295 bits (756), Expect = 2.860e-96
Identity = 157/332 (47.29%), Postives = 199/332 (59.94%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSD--------KGKD----WAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
            IGSHT ++LLEAG++VVV D+  NS       +SL RV  +T C PER+ +H +DLCD AAL ++L   PPF SCIHFAGLK                                                                     + IEEIL+DF  SD        +G +    W I+ LRYFNPTGAH SGDIGEDP G PNNL PY++QVAVG+RE LT+FG  YDT DGTGVRDY+HV+DLA GHLKAL++L+K  CG++THNLG+G+GYSVL+MV+AM+KASG+ +P+ +G  R GDLA VYADP+ A ++LGW+   G+D
Sbjct:   23 IGSHTALVLLEAGFDVVVLDSFVNSSP-----ESLERVLKITNCGPERLKWHKLDLCDQAALHEILLQYPPFDSCIHFAGLKAVNESLHEPLLYYHNNIVSTLNLLKELDERTCRKLVFSSSATVYGNAPAPITEESHVGQGITNPYGRTKYFIEEILRDFTISDDHHATNAKEGHELSSRWKIESLRYFNPTGAHPSGDIGEDPRGPPNNLAPYLSQVAVGRREQLTIFGGDYDTVDGTGVRDYVHVLDLAEGHLKALEYLDKVPCGFHTHNLGSGSGYSVLQMVKAMEKASGRPVPHVIGPRRQGDLASVYADPSLAKKELGWECTRGID 349          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A6H5JNE0_9PHAE (Epimerase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE0_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.670e-94
Identity = 131/133 (98.50%), Postives = 133/133 (100.00%), Query Frame = 1
Query:  250 MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDI 648
            MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSG+IGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKD+
Sbjct:    1 MIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGEIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDV 133          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A448YZL8_9STRA (UDP-glucose 4-epimerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZL8_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.090e-91
Identity = 159/332 (47.89%), Postives = 186/332 (56.02%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTG----CAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK----------------------------------------------------------------------FMIEEILKDFVKS----DKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHT+  LLE GY VVV DNL NS  A     SL RV  LTG       ER+VFH VDLCD  AL +V E  P F +CIHFAGLK                                                                      +M+EEIL+DF KS    D   DW++  LRYFNP GAH SG IGEDPNGIPNNLMPYVAQVA G+RE LTVFGD Y T DGTGVRDY+HV+DLA GH+ A++++EKK  G +T NLGTG G SV++MV AM KA G +I YKVG  R GD+A  YAD + A  +LGW+A+  L+  C
Sbjct:   21 IGSHTIFCLLEQGYGVVVLDNLSNSSVA-----SLDRVAELTGLDEAARRERLVFHQVDLCDRDALKRVFETSPRFAACIHFAGLKAVGESTRIPLKYYHNNITGTLFLLELLDEFGCHSIVFSSSATVYGAADKMPITEETPVGTGITNAYGRTKYMLEEILRDFYKSKTLGDAETDWSVALLRYFNPIGAHPSGKIGEDPNGIPNNLMPYVAQVATGRREFLTVFGDDYPTPDGTGVRDYLHVMDLAEGHISAIEYMEKKKSGTFTFNLGTGNGCSVIDMVRAMSKACGHEIKYKVGPRRPGDIATCYADASLAKNELGWEAKLTLEDMC 347          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A1E7F5A5_9STRA (UDP-glucose 4-epimerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5A5_9STRA)

HSP 1 Score: 275 bits (703), Expect = 2.690e-88
Identity = 158/333 (47.45%), Postives = 182/333 (54.65%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTG----CAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK----------------------------------------------------------------------FMIEEILKDFVKS----DKGK-DWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHT+V LLE GYNVVV DNL NS  A     +L RV  L         ER+VFHNVD+CD  AL KV E  P FH+CIHFAGLK                                                                      +MIEEIL+DF  S    + G  DW++  LRYFNP GAH SG IGEDP+GIPNNLMPYVAQVA G+RE LTVFGD Y T DGTGVRDY+HV+DLA GH+ A+++  KK  G YT NLGTG G SV +M +AM KA G +I  KVG  R GD+A  YAD   A   LGW+A+  LD  C
Sbjct:   23 IGSHTIVCLLEQGYNVVVVDNLINSSLA-----ALDRVAELVNLDDAARKERLVFHNVDICDRNALKKVFETSPTFHACIHFAGLKAVGESTKIPLKYYHNNLTGTFFLLELMDEFGCHSIVFSSSATVYGAADKMPITEETTVGTGITNAYGRTKYMIEEILRDFYNSKTLGESGTTDWSVVILRYFNPIGAHPSGKIGEDPDGIPNNLMPYVAQVAAGRREFLTVFGDDYPTPDGTGVRDYLHVMDLAEGHIAAIEYAGKKEAGTYTFNLGTGNGCSVFDMTKAMGKACGHEIKCKVGARRPGDIATCYADATLAKTKLGWEAKLTLDEMC 350          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A7S1XTS9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTS9_9STRA)

HSP 1 Score: 274 bits (700), Expect = 7.520e-87
Identity = 152/323 (47.06%), Postives = 186/323 (57.59%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHT ++LLEAGY V V DNLCNS       +SL RV  LTG   + + F  VD+ D  ++  +L+  P   SCIHFAGLK                                                                     +MIEEIL+D   S  GK+W+I  LRYFNP GAH SG IGEDPNG PNNLMPYV+QVAVG+RE L+V+G+ YDT DGTGVRDYIHV+DLA GHLKAL++++++G G Y  NLGTG G SVLEMV AM+KASG++IPY + D R GDLA VYA   +A ++LGW A   L+  C
Sbjct:  105 IGSHTCLVLLEAGYEVTVVDNLCNSSP-----ESLTRVADLTGKG-DCLHFFEVDIRDKDSVQDLLKKIPKVDSCIHFAGLKAVGESTKLPLLYYENNVQATVTLLQVLQEAGVKGFVFSSSATVYGDAPVPITEESPVGNGITNAYGRSKYMIEEILRDLSNSPDGKEWSISILRYFNPVGAHPSGRIGEDPNGPPNNLMPYVSQVAVGRREKLSVYGNDYDTPDGTGVRDYIHVMDLADGHLKALEYMDREGAGNYVFNLGTGKGNSVLEMVAAMRKASGREIPYVITDRRPGDLATVYAATDKARDELGWTATRSLEDMC 421          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: I2CQM0_NANGC (UDP-glucose 4-epimerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM0_NANGC)

HSP 1 Score: 269 bits (687), Expect = 1.180e-85
Identity = 151/322 (46.89%), Postives = 184/322 (57.14%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK---------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGC--GWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLD 753
            IGSHTV+LL+EAGY VVV D+L NS +     ++LRRV  LTG  PE+++F   DL D  AL  V      F +C+HFAGLK                                                                     + IE+ L+DF +S  GK W +  LRYFNP GAH SG IGEDP+G PNNLMPYV+QVAVG+R  LTVFG  Y T+DGTGVRDYIHV+DLA GHL ALD+ + +G   G +  NLGTG GYSVLEMV AM+KASG+ I Y +G+ R GDL  VY+DP++A  +LGWKA  GLD
Sbjct:   50 IGSHTVLLLVEAGYEVVVVDSLVNSCE-----EALRRVGALTG-HPEKIIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIMVFSSSATVYGSAQSPVTEDQPVGQGITNPYGQTKYFIEKFLEDFQRSPDGKSWKVVILRYFNPVGAHESGRIGEDPSGTPNNLMPYVSQVAVGRRPQLTVFGGNYQTRDGTGVRDYIHVMDLAEGHLAALDYAKARGHHGGCFVFNLGTGKGYSVLEMVTAMEKASGRKINYVIGERRPGDLDEVYSDPSKAERELGWKATRGLD 365          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: M1VE42_CYAM1 (UDP-glucose 4-epimerase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VE42_CYAM1)

HSP 1 Score: 265 bits (678), Expect = 1.150e-84
Identity = 154/325 (47.38%), Postives = 183/325 (56.31%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKG-KDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKK--GCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHTVV LLE+GY+VVV DNL NS +     ++LRRVR LTG + +R+ F  VDL D  AL   +    P  +CIHFAGLK                                                                      IEE L+D   S  G +DW I  LRYFNP GAH+SG IGEDP GIPNNLMP++AQVAVG+RE L+V+G+ Y T DGTGVRDYIHVVDLA GH+ AL+ LEK     G    NLGTG GYSVLEMV+A +KASG+ IPYK+   R GD A VYADP+ A   LGW+A+ G+D  C
Sbjct:   16 IGSHTVVELLESGYDVVVLDNLSNSSE-----EALRRVRELTGASEQRLQFQAVDLTDGVALDAAVAKSAPISACIHFAGLKAVGESVEQPLRYYRNNLIGTLNLLQSLNRHGCRRFVFSSSATVYGQAEKVPISETSPLGATNPYGKTKLFIEEFLRDLHASPHGGRDWHILILRYFNPVGAHASGRIGEDPVGIPNNLMPFIAQVAVGRREFLSVYGNDYPTPDGTGVRDYIHVVDLAKGHVAALEKLEKDEANVGCVAVNLGTGRGYSVLEMVKAFEKASGRRIPYKIVARRPGDAAVVYADPSFAKTFLGWEAKLGIDEMC 335          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A3A4SA16_9DELT (UDP-glucose 4-epimerase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4SA16_9DELT)

HSP 1 Score: 263 bits (673), Expect = 4.000e-84
Identity = 154/322 (47.83%), Postives = 182/322 (56.52%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHT + LLEAGY V+VADNL NS       +SLRRV+ LTG   ++++FH VDL D + L  + ++     S IHFAGLK                                                                     MIEEILKD   SD    W I  LRYFNP GAH SG IGEDPNGIPNNL+PYV+QVAVGK E L+V+G+ Y TKDGTGVRDYIHVVDLA GH+KAL  LE       T+NLGTG GYSVLEMV+A +KASGK +PY++   R GD+A  YADP  A ++LGW AQ GL+  C
Sbjct:   12 IGSHTCLELLEAGYEVIVADNLVNSNP-----ESLRRVQELTG---KKIIFHKVDLRDKSGLDAIFQSAS-IQSVIHFAGLKAVGESVSIPLAYYHNNITGTLILCDVMKEHNVRNFVFSSSATVYGDPHTVPIKEDFPVSVTNPYGRTKLMIEEILKDLHGSDP--TWNIALLRYFNPVGAHPSGRIGEDPNGIPNNLLPYVSQVAVGKLEKLSVYGNDYPTKDGTGVRDYIHVVDLAKGHIKALAKLESGNGQLLTYNLGTGQGYSVLEMVKAFEKASGKKVPYQIVGRRTGDIATCYADPTLAKKELGWTAQQGLEEMC 322          
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Match: A0A1V5GY22_9DELT (UDP-glucose 4-epimerase n=1 Tax=Deltaproteobacteria bacterium ADurb.BinA179 TaxID=1852872 RepID=A0A1V5GY22_9DELT)

HSP 1 Score: 263 bits (672), Expect = 5.160e-84
Identity = 154/323 (47.68%), Postives = 184/323 (56.97%), Query Frame = 1
Query:    1 IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMVFHNVDLCDVAALGKVLEACPPFHSCIHFAGLK--------------------------------------------------------------------FMIEEILKDFVKSDKGKDWAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFGDKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGC-GWYTHNLGTGTGYSVLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGLDVSC 762
            IGSHT V LLEAGY V+VADNL NS++     +SLRRV  +TG   +R+ FH VDL D  AL  +  A     + IHFAGLK                                                                     MIE IL+D   SD G  W I  LRYFNP GAH+SG IGEDPNG PNNLMP+++QVAVGK   L+VFG+ Y T+DGTGVRDYIHVVDLA GH+ AL  LE+  C G  T+NLGTG GYSVLEMV A +KASG+ IPY++ + R GD+A  YADP++A  +LGWKAQ G+D  C
Sbjct:   12 IGSHTCVELLEAGYEVIVADNLSNSKE-----ESLRRVEAITG---KRLTFHKVDLLDREALSSIF-ARSEIRAVIHFAGLKAVGESVSVPLRYYHNNVTGTLILCSVMMEHGVRNMVFSSSATVYGDPERVPIREDFPLGATNPYGRSKLMIEVILRDLHASDAG--WNIALLRYFNPVGAHASGLIGEDPNGTPNNLMPFISQVAVGKLPMLSVFGNDYPTRDGTGVRDYIHVVDLAQGHIHALKKLEQ--CPGIVTYNLGTGQGYSVLEMVRAFEKASGRKIPYRIAERRPGDIASCYADPSKAESELGWKAQRGIDDMC 321          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13794.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL5_ECTSI1.320e-17894.82UDP-glucose 4-epimerase n=1 Tax=Ectocarpus silicul... [more]
A0A835YY50_9STRA2.860e-9647.29UDP-glucose 4-epimerase n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNE0_9PHAE1.670e-9498.50Epimerase domain-containing protein n=1 Tax=Ectoca... [more]
A0A448YZL8_9STRA1.090e-9147.89UDP-glucose 4-epimerase n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7F5A5_9STRA2.690e-8847.45UDP-glucose 4-epimerase n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1XTS9_9STRA7.520e-8747.06Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
I2CQM0_NANGC1.180e-8546.89UDP-glucose 4-epimerase n=1 Tax=Nannochloropsis ga... [more]
M1VE42_CYAM11.150e-8447.38UDP-glucose 4-epimerase n=2 Tax=cellular organisms... [more]
A0A3A4SA16_9DELT4.000e-8447.83UDP-glucose 4-epimerase n=1 Tax=Desulfobacteraceae... [more]
A0A1V5GY22_9DELT5.160e-8447.68UDP-glucose 4-epimerase n=1 Tax=Deltaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13794contigEcto-sp13_S_contig13794:186..4597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score500.0
Seed ortholog evalue6.7e-139
Seed eggNOG ortholog2880.D8LEL5
Preferred nameUGE1
Model size768
KEGG rclassRC00289
KEGG koko:K01784
KEGG ReactionR00291,R02984
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00361,M00362,M00632
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0003824,GO:0003978,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009555,GO:0009653,GO:0009832,GO:0009888,GO:0009969,GO:0009987,GO:0010015,GO:0010053,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016020,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0022622,GO:0030154,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0050373,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090558,GO:0090627,GO:0098791,GO:0099402,GO:1901576,GO:1905392
Exons6
EggNOG free text desc.racemase and epimerase activity, acting on carbohydrates and derivatives
EggNOG OGsCOG1087@1,KOG1371@2759
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase, N-terminal domain
Ec32 orthologEc-23_002560.1
EC5.1.3.2
Cds size768
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13794.2978.1prot_Ecto-sp13_S_contig13794.2978.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13794 186..4597 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.4710767-CDS-Ecto-sp13_S_contig13794:185..3081681462736.4710767-CDS-Ecto-sp13_S_contig13794:185..308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 186..308 -
1681462736.4835684-CDS-Ecto-sp13_S_contig13794:721..7861681462736.4835684-CDS-Ecto-sp13_S_contig13794:721..786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 722..786 -
1681462736.4913976-CDS-Ecto-sp13_S_contig13794:1285..14541681462736.4913976-CDS-Ecto-sp13_S_contig13794:1285..1454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 1286..1454 -
1681462736.5032992-CDS-Ecto-sp13_S_contig13794:1627..17921681462736.5032992-CDS-Ecto-sp13_S_contig13794:1627..1792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 1628..1792 -
1681462736.5116358-CDS-Ecto-sp13_S_contig13794:3715..38641681462736.5116358-CDS-Ecto-sp13_S_contig13794:3715..3864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 3716..3864 -
1681462736.519997-CDS-Ecto-sp13_S_contig13794:4500..45971681462736.519997-CDS-Ecto-sp13_S_contig13794:4500..4597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13794 4501..4597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13794.2978.1

>prot_Ecto-sp13_S_contig13794.2978.1 ID=prot_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp
IGSHTVVLLLEAGYNVVVADNLCNSRQAQAHIQSLRRVRVLTGCAPERMV
FHNVDLCDVAALGKVLEACPPFHSCIHFAGLKFMIEEILKDFVKSDKGKD
WAIDCLRYFNPTGAHSSGDIGEDPNGIPNNLMPYVAQVAVGKRECLTVFG
DKYDTKDGTGVRDYIHVVDLASGHLKALDFLEKKGCGWYTHNLGTGTGYS
VLEMVEAMKKASGKDIPYKVGDPRVGDLACVYADPARAAEDLGWKAQFGL
DVSCC*
back to top

mRNA from alignment at Ecto-sp13_S_contig13794:186..4597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13794.2978.1 ID=mRNA_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4412bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13794:186..4597- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGAAGCCACACGGTGGTTCTTCTGCTTGAGGCTGGCTACAACGTCGT CGTCGCTGATAACCTCTGCAACTCCAGGCAAGCACAAGCACATATACGTG TGATAAGTAGCCCTTTTGATTGTTTGCGGGTTCCTTCCACTCAAGAAGCG TGCCTGGTGATTTGAGGTCCCGGTTCATCTATATACAGGGCGCAAAGTTC CTGTGTGCCTGTCATGTAGCTTTGCAAACTTCAGAGAAGTGTCGATGTTA TTTTTGTATTAGTTCAGCTTCGCTAGCTAGCAGCTTCTGCCTGCCCCGCG GTCTCGCCTCTCCTTGACCGAAGGGCTCTAATCATCCCGGGCGTCGTGCA GAGTAAACCGTCTACTGCGCGGCACGGAGACACGTGAGAACCTGTATCGT ACGAGTCCACCAACATCGCGAGAGGGACAGCCTGAAACGCTTCCGATGTG CGGGCACCGCAACCGTTTCAGCTTCCTTTTTTTTTTGCTGCCCTACTGAC TTGACACAATAAACCCATCTCTATCCTCAGATGAAAGAGTCGAGGACAAG CTTAGCAACATGTCCATAGCGTCAGCGGAAGCGCTACCTGTGTTGCAGCT TTCGTTTTCCCGCCCCCCAAACATGTAAAAGAAACTTACTGTTGAAAAGG AACAGTATGTTCTTGTAAAAGAAACATGTCCTTACCAGAGATGCCAACGT TGCACGCCCGCACATACATTTCGCACAGCGAAGAGAGCCTGAGGCGCGTG CGCGTGCTGACCGGCTGCGCGCCCGAGAGGATGGTGTTCCACAACGTTGA CCTCTGCGACGTGGCCGCCCTGGGCAAGGTGCTCGAGGCCTGCCCGCCGT TCCACTCGTGCATCCACTTCGCCGGCCTCAAGGTGGGGGGGGCGCACTCT TGGTCGTGCATGCCGTAGTCGTTAGACCGTTGATCTCGCGTTCCTACATA ACCGGGACGGAGCACGCCGGGTTCTCACCGGACCAAGCTCCGTGGGGGGG TTAGGCATGTATTCGAGTGGATTGTCACCGTTGGCTGACATGGAGCCACG AAACACAACAGCCTCATATGTGTGAGTAAGTCAACTTGTGACCAAAGTAG AAGGCGGAGCGGGTAGTTCTTTTTGGGGGGGGAGAGGTTTCTTGCGCATG TATGCAGTGTTCTAGCAGCCCCCGGCTTACCCCTAACATTTCTTTCTCCC AGGCTCGCGCGTGAGCCTGATAGCGGTGTTTTTTTTTTTGCATCAGGGAG CAATGGTGTTGTTCCCACACACACCCTAACGCTGCCAGAACCCCTGGTCA ACTTCCCTGTTGAGTGCGAGCATTTCTCGTGGACACCATAATGAAGGCTT GGTGTGTTGTTGTTTCTTAGCCAGGAATACATGAAAATATCTATTTGAAT AATGACTTGTTTTGGGTATTTTTTGATGTTCAGTTTTTGGGACGTAATGA TATCTTGTTGGTATGTGTCTGGCTTGCTGTCTCGAGCGGCAATGACCTGA TTTCCACACGTGGTCGACACCATTGCCCCGTAGCAGCACCCGTACTACTG TATCGCGACCGAAACACAACCCCCTTCCCTCTCGTGGCCCTCCCCCCCCC CCTTCCCCCGGTGCGATTTTTTTTATCAGGCGGTGGGCGAGTCCGTCGCG CTGCCGCTCCTGTACTACCACAACAACATCATGAGCACCCTCGTGCTGCT GGAGGAGCTGGGCAAGACCACCTGCCGCAACTTCGTCTTCTCCTCCTCAG CAACTGTGTACGGCACCTCCCCCTCCCCCATCACAGAGAGTTCCAAAGTG GGCGACGGCATCACCAACCCTTACGGTGCGGAGGGGGCAACTGATCGTAC CTCAAGCGGGGGGGGGAAGTGTACTCATAGTCGCGTATGCCATATTCGGT AGACCATTGACCTCGCATCCCTACCAAGCTGGGACGGAGTACACCGGGTT CTAACAGCGAGGGGGGGAGGGGGTGTACTTTCCGCGTTTCCCTTGTGGCG TTGATTAGCTGTATGAGGCAAGATGATATTTCATGGAAAGTGTGTGCATA CAACAGTTTCTGAGGGGCGGAGAAACACCGGCTCTACGCTCCTTGGTAGG CGCACCCCGGGGGGGGCATTTCCAACTTGCTGCCAGAGGGGAAGTTGTAC CCTTCTTGAAATGAGGTGCTGTGTCTTTGCGCATGTTTTCGTATGGATTT TTCCCGCCTTCTTTACGCCAATAGGCTGTAGGTTTTCTCGGGCAGCGCCG TAGGATATGCCACCGGCCTGGAGGTGGCAAGGAAGAGGGGATGTATTGTA TGGTGGCCGTTAGGGTGAGAGAGACGAGAGGTACAAACTGAGTGGAGGGG AGTCAGGAGGCACAGTGGTGGTGAGCACGCTCTTGTTTTGCGTCCCCGAA CACAGTTGCCCACGCCCGGCACATCTCTCGGACGAATCACATTCACTCCG TGGTCGGACACCTCGATTTAAATCTTGGAGCCTCACCACTGTTTTTTTTT CAGGCAGGAAGGAGAACGGAGTGTGCACTGTCATCATCAACCCCGTGCCC CCTTTTGTTTGTTTTTGGTTCTGTACTCTTGTCTTCTTTTTGAGCTGCTT TTTTCGGCCATCCGCCCAAAAAATATGATGATGGAGAATTCACTTACCCG CTACTCCTGTTGTTTGTTTTCTGCTTTGATTATTTGTTTCCGCACTCGTC AGCAACCCCTTCCCTGTATTACTGCTGTCACTGAGCGATGCATATCATGC GTGTTGATTTTTTTTTCTCCTCTATTTATGTATTTATTCCGCAGGCCGCA CAAAGTTCATGATCGAAGAAATCCTCAAGGACTTCGTCAAGAGCGACAAG GGCAAGGACTGGGCCATCGACTGCCTCCGGTACTTCAACCCCACTGGTGC CCACAGCAGCGGCGACATCGGAGAGGACCCCAACGGCATCCCCAACAACC TCATGCCCTACGTGGCCCAGGTGAGGTGGCCCGGGGAGAAGTACGATATT TGTTTTGTTTTTCTGTGAAGTATTTTCTTTTCCTTGCTTCAACTTCCCAT CTTCACTACTAATTCATTGCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTGCTACTTTGCGTCGAAAAAAGGTGGCCG TGGGCAAGCGCGAGTGCCTGACCGTCTTCGGCGACAAGTACGACACCAAG GACGGGACCGGTGTCCGAGACTACATCCACGTCGTCGACCTCGCCTCGGG ACACCTCAAGGCTCTAGACTTCCTAGAGAAGAAGGGCTGCGGCTGGTACA CGCACAACCTCGGTGAGTGCGTTTGACATGCAAAGGAGGGGGGGTACTGA CGTAAACGCATGCCATGACCATTAGGCCATTGACCTTACATCTCTACAAT GCCGGGATGGAGCGATATGCCGGGTTTTCCCGGCGACTGACCGGGTTCGA ATGAACGCGGGCGGCGGTGTAAACAGCATATACGTGAAATTACAGCGGTG CTGTAGGCACCTGCACGTGGCCGCGGGCCGACACACACGCGCCATGCCTT TGTACCAACTCAGAACGTATTTATTTGCGGCACGAAACCCCGGAGCTGCT GCTGCTGCTGCTGCTGCTGTGCTGTTGCTGCTGCTGCTGTGTGTGTGTGT GTGTGTTTTCGCGACGGTCTTGCGCTCCCCCTTCACTATTGGTAAGGAGA AGGGGTGTCCTAGCAGCTTGTTCATCGTGCAGGTTTCTTATGTCGCGTGG TTGTTCATGGACGTTGTTTGCCGTATGCATCATTCGTCTGAAAATGTGAA ATATGGTACAGGAACTGGTACCGGCTACTCTGTGCTGGAGATGGTGGAGG CGATGAAGAAGGCATCGGGGAAGGACGTGAGTATGTAGCTCTTGCTGGGT GCCACATGATAGCAGTAGCGACCTTCCCCTGGGAATGCTTTGATTTGCTG CTGCATGTATTTGTTTTGCTGCTGCGGCGGCGGGCAGAGCCTGCTGATTG CTCGTTTATTTTGCCGGAATCCCCCCCCCCCCCCCCCCCTTTAACGACTA CGGCATGCACGACTATGAGTACACCCCCCCCCCTCCCACCTCACTCTCTC TGGCTGCACACCAACACCACGCAGCGCTACACATGTACACTGCAGCAGTA GCACGTATCTGCACACACGACACACGTTCTTGAGCAGCAATGAGTCTTTT GGGACCTGAACAAACACGACTGACCGCTGCTGTCGTCCCGACTGCCCCGA ACAAAAAACACGCGCTGTGAACGACACGACACGACACAGATCCCGTACAA GGTGGGGGACCCCAGGGTGGGAGACCTCGCGTGCGTGTACGCGGACCCCG CGAGGGCGGCCGAGGACCTCGGGTGGAAGGCCCAGTTCGGCCTCGACGTA AGTTGTTGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13794:186..4597-

>mRNA_Ecto-sp13_S_contig13794.2978.1 ID=mRNA_Ecto-sp13_S_contig13794.2978.1|Name=mRNA_Ecto-sp13_S_contig13794.2978.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13794:186..4597- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGAAGCCACACGGTGGTTCTTCTGCTTGAGGCTGGCTACAACGTCGT
CGTCGCTGATAACCTCTGCAACTCCAGGCAAGCACAAGCACATATACAGA
GCCTGAGGCGCGTGCGCGTGCTGACCGGCTGCGCGCCCGAGAGGATGGTG
TTCCACAACGTTGACCTCTGCGACGTGGCCGCCCTGGGCAAGGTGCTCGA
GGCCTGCCCGCCGTTCCACTCGTGCATCCACTTCGCCGGCCTCAAGTTCA
TGATCGAAGAAATCCTCAAGGACTTCGTCAAGAGCGACAAGGGCAAGGAC
TGGGCCATCGACTGCCTCCGGTACTTCAACCCCACTGGTGCCCACAGCAG
CGGCGACATCGGAGAGGACCCCAACGGCATCCCCAACAACCTCATGCCCT
ACGTGGCCCAGGTGGCCGTGGGCAAGCGCGAGTGCCTGACCGTCTTCGGC
GACAAGTACGACACCAAGGACGGGACCGGTGTCCGAGACTACATCCACGT
CGTCGACCTCGCCTCGGGACACCTCAAGGCTCTAGACTTCCTAGAGAAGA
AGGGCTGCGGCTGGTACACGCACAACCTCGGAACTGGTACCGGCTACTCT
GTGCTGGAGATGGTGGAGGCGATGAAGAAGGCATCGGGGAAGGACATCCC
GTACAAGGTGGGGGACCCCAGGGTGGGAGACCTCGCGTGCGTGTACGCGG
ACCCCGCGAGGGCGGCCGAGGACCTCGGGTGGAAGGCCCAGTTCGGCCTC
GACGTAAGTTGTTGTTGA
back to top